RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 H7C423 109 aa6.78□□□□□ -1.32
VPS28-204ENST00000526054 TCAPO15273 167 aa6.78□□□□□ -1.32
VPS28-204ENST00000526054 TSHBP01222 138 aa6.78□□□□□ -1.32
VPS28-204ENST00000526054 NPYP01303 97 aa6.78□□□□□ -1.32
VPS28-204ENST00000526054 ANGP03950 147 aaKnown RBP6.78□□□□□ -1.32
VPS28-204ENST00000526054 S100A6P06703 90 aa6.78□□□□□ -1.32
VPS28-204ENST00000526054 INAFM2P0DMQ5 153 aa6.78□□□□□ -1.32
VPS28-204ENST00000526054 XGP55808 180 aa6.78□□□□□ -1.32
VPS28-204ENST00000526054 RBX1P62877 108 aa6.78□□□□□ -1.32
VPS28-204ENST00000526054 RPL32P62910 135 aaKnown RBP6.78□□□□□ -1.32
VPS28-204ENST00000526054 Q5VSD8 79 aa6.78□□□□□ -1.32
VPS28-204ENST00000526054 Q8N976 141 aa6.78□□□□□ -1.32
VPS28-204ENST00000526054 RMI2Q96E14 147 aa6.78□□□□□ -1.32
VPS28-204ENST00000526054 TM2D2Q9BX73 214 aa6.78□□□□□ -1.32
VPS28-204ENST00000526054 A0A1B0GUV1 79 aa6.77□□□□□ -1.33
VPS28-204ENST00000526054 PSCAO43653 123 aa6.77□□□□□ -1.33
VPS28-204ENST00000526054 KRTAP10-1P60331 282 aa6.77□□□□□ -1.33
VPS28-204ENST00000526054 Q0VG73 95 aa6.77□□□□□ -1.33
VPS28-204ENST00000526054 AMMECR1LQ6DCA0 310 aa6.77□□□□□ -1.33
VPS28-204ENST00000526054 UBE2WQ96B02 151 aa6.77□□□□□ -1.33
VPS28-204ENST00000526054 SMIM2Q9BVW6 85 aa6.77□□□□□ -1.33
VPS28-204ENST00000526054 MYCBP2O75592 4640 aa6.76□□□□□ -1.33
VPS28-204ENST00000526054 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.76□□□□□ -1.33
VPS28-204ENST00000526054 IGKV2-29A2NJV5 120 aaPredicted RBP6.76□□□□□ -1.33
VPS28-204ENST00000526054 NDUFA6P56556 154 aa6.76□□□□□ -1.33
VPS28-204ENST00000526054 RNASEKQ6P5S7 137 aaKnown RBP6.76□□□□□ -1.33
VPS28-204ENST00000526054 BAGE3Q86Y29 109 aa6.76□□□□□ -1.33
VPS28-204ENST00000526054 C18orf32Q8TCD1 76 aa6.76□□□□□ -1.33
VPS28-204ENST00000526054 MAP1LC3AQ9H492 121 aa6.76□□□□□ -1.33
VPS28-204ENST00000526054 COX11Q9Y6N1 276 aa6.76□□□□□ -1.33
VPS28-204ENST00000526054 FLG2Q5D862 2391 aaPredicted RBP6.75□□□□□ -1.33
VPS28-204ENST00000526054 FGF6P10767 208 aa6.75□□□□□ -1.33
VPS28-204ENST00000526054 ESDP10768 282 aa6.75□□□□□ -1.33
VPS28-204ENST00000526054 ZNF25P17030 456 aaPredicted RBP6.75□□□□□ -1.33
VPS28-204ENST00000526054 GCSHP23434 173 aa6.75□□□□□ -1.33
VPS28-204ENST00000526054 SMAGPQ0VAQ4 97 aa6.75□□□□□ -1.33
VPS28-204ENST00000526054 MIAQ16674 131 aa6.75□□□□□ -1.33
VPS28-204ENST00000526054 TMEM18Q96B42 140 aa6.75□□□□□ -1.33
VPS28-204ENST00000526054 TMEM101Q96IK0 257 aa6.75□□□□□ -1.33
VPS28-204ENST00000526054 DMBT1Q9UGM3 2413 aaPredicted RBP6.75□□□□□ -1.33
VPS28-204ENST00000526054 IGKV2D-24A0A075B6R9 120 aa6.74□□□□□ -1.33
VPS28-204ENST00000526054 IGLV5-52A0A0A0MRZ9 124 aa6.74□□□□□ -1.33
VPS28-204ENST00000526054 COA6Q5JTJ3 125 aaKnown RBP6.74□□□□□ -1.33
VPS28-204ENST00000526054 CLPSL2Q6UWE3 100 aa6.74□□□□□ -1.33
VPS28-204ENST00000526054 LINC00269Q8N2A0 174 aa6.74□□□□□ -1.33
VPS28-204ENST00000526054 C20orf203Q8NBC4 194 aa6.74□□□□□ -1.33
VPS28-204ENST00000526054 PRSS3P2Q8NHM4 247 aa6.74□□□□□ -1.33
VPS28-204ENST00000526054 C1orf43Q9BWL3 253 aa6.74□□□□□ -1.33
VPS28-204ENST00000526054 PRR34Q9NV39 138 aa6.74□□□□□ -1.33
VPS28-204ENST00000526054 IGLV4-60A0A075B6I1 120 aa6.73□□□□□ -1.33
VPS28-204ENST00000526054 LOC389332A0A1B0GUA5 103 aa6.73□□□□□ -1.33
VPS28-204ENST00000526054 PRSS47A8MTI9 375 aa6.73□□□□□ -1.33
VPS28-204ENST00000526054 HAMPP81172 84 aa6.73□□□□□ -1.33
VPS28-204ENST00000526054 REG3AQ06141 175 aa6.73□□□□□ -1.33
VPS28-204ENST00000526054 ENHOQ6UWT2 76 aa6.73□□□□□ -1.33
VPS28-204ENST00000526054 FA2HQ7L5A8 372 aa6.73□□□□□ -1.33
VPS28-204ENST00000526054 OR5A1Q8NGJ0 315 aa6.73□□□□□ -1.33
VPS28-204ENST00000526054 CHCHD1Q96BP2 118 aaKnown RBP6.73□□□□□ -1.33
VPS28-204ENST00000526054 NXT2Q9NPJ8 142 aaKnown RBP6.73□□□□□ -1.33
VPS28-204ENST00000526054 SERF1AO75920 110 aa6.72□□□□□ -1.33
VPS28-204ENST00000526054 SMR3BP02814 79 aaPredicted RBP6.72□□□□□ -1.33
VPS28-204ENST00000526054 SNRPEP62304 92 aaKnown RBP6.72□□□□□ -1.33
VPS28-204ENST00000526054 DGAT2L7PQ6IED9 249 aa6.72□□□□□ -1.33
VPS28-204ENST00000526054 MRPL52Q86TS9 123 aaKnown RBP6.72□□□□□ -1.33
VPS28-204ENST00000526054 Q8N8P6 123 aa6.72□□□□□ -1.33
VPS28-204ENST00000526054 NTN5Q8WTR8 489 aaPredicted RBP6.72□□□□□ -1.33
VPS28-204ENST00000526054 DNAH8Q96JB1 4490 aa6.72□□□□□ -1.33
VPS28-204ENST00000526054 TRAV8-4A0A0B4J246 113 aa6.71□□□□□ -1.34
VPS28-204ENST00000526054 LRCOL1A6NCL2 159 aa6.71□□□□□ -1.34
VPS28-204ENST00000526054 C5orf52A6NGY3 159 aa6.71□□□□□ -1.34
VPS28-204ENST00000526054 FAM229AH3BQW9 127 aa6.71□□□□□ -1.34
VPS28-204ENST00000526054 K7EMI3 77 aa6.71□□□□□ -1.34
VPS28-204ENST00000526054 HSBP1O75506 76 aa6.71□□□□□ -1.34
VPS28-204ENST00000526054 LINC00614P0C842 121 aa6.71□□□□□ -1.34
VPS28-204ENST00000526054 IFI27P40305 119 aaPredicted RBP6.71□□□□□ -1.34
VPS28-204ENST00000526054 AP5S1Q9NUS5 200 aa6.71□□□□□ -1.34
VPS28-204ENST00000526054 S100A2P29034 98 aa6.7□□□□□ -1.34
VPS28-204ENST00000526054 ORMDL2Q53FV1 153 aa6.7□□□□□ -1.34
VPS28-204ENST00000526054 Q8N814 137 aa6.7□□□□□ -1.34
VPS28-204ENST00000526054 TIMM21Q9BVV7 248 aa6.7□□□□□ -1.34
VPS28-204ENST00000526054 UBE2D4Q9Y2X8 147 aa6.7□□□□□ -1.34
VPS28-204ENST00000526054 CSDC2Q9Y534 153 aaKnown RBP6.7□□□□□ -1.34
VPS28-204ENST00000526054 IGKV3OR2-268A0A0C4DH90 116 aa6.69□□□□□ -1.34
VPS28-204ENST00000526054 LINC01546A6NGU7 62 aa6.69□□□□□ -1.34
VPS28-204ENST00000526054 LINC00310P59036 64 aa6.69□□□□□ -1.34
VPS28-204ENST00000526054 PDZD11Q5EBL8 140 aa6.69□□□□□ -1.34
VPS28-204ENST00000526054 HIST3H2BBQ8N257 126 aa6.69□□□□□ -1.34
VPS28-204ENST00000526054 URB1-AS1Q96HZ7 61 aa6.69□□□□□ -1.34
VPS28-204ENST00000526054 SPANXA1Q9NS26 97 aa6.69□□□□□ -1.34
VPS28-204ENST00000526054 IGLV10-54A0A075B6I4 117 aa6.68□□□□□ -1.34
VPS28-204ENST00000526054 NUPR1O60356 82 aa6.68□□□□□ -1.34
VPS28-204ENST00000526054 G0S2P27469 103 aa6.68□□□□□ -1.34
VPS28-204ENST00000526054 RPL39P62891 51 aaKnown RBP6.68□□□□□ -1.34
VPS28-204ENST00000526054 ZNF664Q8N3J9 261 aa6.68□□□□□ -1.34
VPS28-204ENST00000526054 BAALCQ8WXS3 180 aa6.68□□□□□ -1.34
VPS28-204ENST00000526054 CDC42SE2Q9NRR3 84 aa6.68□□□□□ -1.34
VPS28-204ENST00000526054 CYSLTR1Q9Y271 337 aa6.68□□□□□ -1.34
VPS28-204ENST00000526054 SS18Q15532 418 aa6.67□□□□□ -1.34
VPS28-204ENST00000526054 C14orf177Q52M58 125 aa6.67□□□□□ -1.34
VPS28-204ENST00000526054 C2orf66Q6UXQ4 117 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms