RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 TIRAPP58753 221 aa7.97□□□□□ -1.13
HDAC9-228ENST00000524023 MIAQ16674 131 aa7.97□□□□□ -1.13
HDAC9-228ENST00000524023 ZNF843Q8N446 348 aa7.97□□□□□ -1.13
HDAC9-228ENST00000524023 CDKN2A-AS1Q9UH64 79 aa7.97□□□□□ -1.13
HDAC9-228ENST00000524023 SONP18583 2426 aaKnown RBP7.97□□□□□ -1.13
HDAC9-228ENST00000524023 IGHV3OR16-12A0A075B7B8 117 aa7.97□□□□□ -1.13
HDAC9-228ENST00000524023 IL17DQ8TAD2 202 aa7.97□□□□□ -1.13
HDAC9-228ENST00000524023 NIPBLQ6KC79 2804 aaeCLIP7.97□□□□□ -1.13
HDAC9-228ENST00000524023 IGLV5-45A0A087WSX0 123 aa7.96□□□□□ -1.14
HDAC9-228ENST00000524023 TRIAP1O43715 76 aa7.96□□□□□ -1.14
HDAC9-228ENST00000524023 ATXN8Q156A1 80 aa7.96□□□□□ -1.14
HDAC9-228ENST00000524023 DGAT2L7PQ6IED9 249 aa7.96□□□□□ -1.14
HDAC9-228ENST00000524023 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.96□□□□□ -1.14
HDAC9-228ENST00000524023 TRGV1A0A0A0MS02 117 aa7.95□□□□□ -1.14
HDAC9-228ENST00000524023 TIMM17BO60830 172 aa7.95□□□□□ -1.14
HDAC9-228ENST00000524023 NPC2P61916 151 aa7.95□□□□□ -1.14
HDAC9-228ENST00000524023 LINC01620Q4KN68 170 aa7.95□□□□□ -1.14
HDAC9-228ENST00000524023 C11orf44Q8N8P7 122 aa7.95□□□□□ -1.14
HDAC9-228ENST00000524023 TMEM101Q96IK0 257 aa7.95□□□□□ -1.14
HDAC9-228ENST00000524023 CUBNO60494 3623 aa7.95□□□□□ -1.14
HDAC9-228ENST00000524023 A0A1W2PRX2 142 aa7.94□□□□□ -1.14
HDAC9-228ENST00000524023 DNAJC9-AS1A6NH13 148 aa7.94□□□□□ -1.14
HDAC9-228ENST00000524023 NDUFA1O15239 70 aa7.94□□□□□ -1.14
HDAC9-228ENST00000524023 COX6A2Q02221 97 aa7.94□□□□□ -1.14
HDAC9-228ENST00000524023 RNF183Q96D59 192 aa7.94□□□□□ -1.14
HDAC9-228ENST00000524023 YAE1D1Q9NRH1 226 aa7.94□□□□□ -1.14
HDAC9-228ENST00000524023 ICOSQ9Y6W8 199 aa7.94□□□□□ -1.14
HDAC9-228ENST00000524023 SETXQ7Z333 2677 aaKnown RBP7.94□□□□□ -1.14
HDAC9-228ENST00000524023 CCL24O00175 119 aa7.94□□□□□ -1.14
HDAC9-228ENST00000524023 K7EQD1 137 aa7.93□□□□□ -1.14
HDAC9-228ENST00000524023 MT-ATP8P03928 68 aa7.93□□□□□ -1.14
HDAC9-228ENST00000524023 LINC00694P0DN24 101 aa7.93□□□□□ -1.14
HDAC9-228ENST00000524023 IFITM1P13164 125 aa7.93□□□□□ -1.14
HDAC9-228ENST00000524023 XGP55808 180 aa7.93□□□□□ -1.14
HDAC9-228ENST00000524023 LINC00242Q5T6M2 205 aa7.93□□□□□ -1.14
HDAC9-228ENST00000524023 Q6ZTI0 123 aa7.93□□□□□ -1.14
HDAC9-228ENST00000524023 FLNAP21333 2647 aaKnown RBP7.93□□□□□ -1.14
HDAC9-228ENST00000524023 IGLV5-39A0A0G2JS06 123 aa7.93□□□□□ -1.14
HDAC9-228ENST00000524023 TRBV10-1A0A0K0K1A3 114 aa7.93□□□□□ -1.14
HDAC9-228ENST00000524023 HERVK_113P63121 156 aa7.93□□□□□ -1.14
HDAC9-228ENST00000524023 RPL36AP83881 106 aaKnown RBP7.93□□□□□ -1.14
HDAC9-228ENST00000524023 RPL36ALQ969Q0 106 aaKnown RBP7.93□□□□□ -1.14
HDAC9-228ENST00000524023 LINC01600Q96MT4 127 aa7.93□□□□□ -1.14
HDAC9-228ENST00000524023 NTM-AS1Q6ZSK4 140 aa7.92□□□□□ -1.14
HDAC9-228ENST00000524023 FAM19A3Q7Z5A8 133 aa7.92□□□□□ -1.14
HDAC9-228ENST00000524023 DAND5Q8N907 189 aa7.92□□□□□ -1.14
HDAC9-228ENST00000524023 ESM1Q9NQ30 184 aa7.92□□□□□ -1.14
HDAC9-228ENST00000524023 SETD2Q9BYW2 2564 aaPredicted RBP7.92□□□□□ -1.14
HDAC9-228ENST00000524023 TRAV4A0A0B4J268 109 aa7.91□□□□□ -1.14
HDAC9-228ENST00000524023 TRBV10-2A0A0K0K1G8 114 aa7.91□□□□□ -1.14
HDAC9-228ENST00000524023 DAZ2Q13117 558 aaKnown RBP7.91□□□□□ -1.14
HDAC9-228ENST00000524023 DAZ4Q86SG3 579 aaKnown RBP7.91□□□□□ -1.14
HDAC9-228ENST00000524023 TEX29Q8N6K0 151 aa7.91□□□□□ -1.14
HDAC9-228ENST00000524023 NTN5Q8WTR8 489 aaPredicted RBP7.91□□□□□ -1.14
HDAC9-228ENST00000524023 DAZ3Q9NR90 486 aaKnown RBP7.91□□□□□ -1.14
HDAC9-228ENST00000524023 CSDC2Q9Y534 153 aaKnown RBP7.91□□□□□ -1.14
HDAC9-228ENST00000524023 JMJD1CQ15652 2540 aa7.91□□□□□ -1.14
HDAC9-228ENST00000524023 NOTCH3Q9UM47 2321 aa7.91□□□□□ -1.14
HDAC9-228ENST00000524023 A0A1B0GV72 72 aa7.91□□□□□ -1.14
HDAC9-228ENST00000524023 TMEM262E9PQX1 116 aa7.91□□□□□ -1.14
HDAC9-228ENST00000524023 NDUFA7O95182 113 aa7.91□□□□□ -1.14
HDAC9-228ENST00000524023 COX6CP09669 75 aa7.91□□□□□ -1.14
HDAC9-228ENST00000524023 WFDC11Q8NEX6 87 aa7.91□□□□□ -1.14
HDAC9-228ENST00000524023 CCDC168Q8NDH2 2452 aa7.9□□□□□ -1.14
HDAC9-228ENST00000524023 CIRBPQ14011 172 aaKnown RBP7.9□□□□□ -1.14
HDAC9-228ENST00000524023 CITED2Q99967 270 aaPredicted RBP7.9□□□□□ -1.14
HDAC9-228ENST00000524023 Q9H8V8 135 aa7.9□□□□□ -1.14
HDAC9-228ENST00000524023 GAGE12JA6NER3 117 aa7.9□□□□□ -1.15
HDAC9-228ENST00000524023 SMIM1B2RUZ4 78 aa7.9□□□□□ -1.15
HDAC9-228ENST00000524023 RPL13AP40429 203 aaKnown RBP7.9□□□□□ -1.15
HDAC9-228ENST00000524023 GAGE4Q13068 117 aa7.9□□□□□ -1.15
HDAC9-228ENST00000524023 GAGE5Q13069 117 aa7.9□□□□□ -1.15
HDAC9-228ENST00000524023 NOP10Q9NPE3 64 aaKnown RBP7.9□□□□□ -1.15
HDAC9-228ENST00000524023 ANK3Q12955 4377 aaKnown RBP7.9□□□□□ -1.15
HDAC9-228ENST00000524023 TRAV13-1A0A0B4J241 112 aa7.89□□□□□ -1.15
HDAC9-228ENST00000524023 GIG44P09565 113 aaPredicted RBP7.89□□□□□ -1.15
HDAC9-228ENST00000524023 CDC42SE2Q9NRR3 84 aa7.89□□□□□ -1.15
HDAC9-228ENST00000524023 H7C423 109 aa7.88□□□□□ -1.15
HDAC9-228ENST00000524023 CIDEAO60543 219 aa7.88□□□□□ -1.15
HDAC9-228ENST00000524023 CKS1BP61024 79 aa7.88□□□□□ -1.15
HDAC9-228ENST00000524023 LINC00308Q8TCZ7 52 aa7.88□□□□□ -1.15
HDAC9-228ENST00000524023 CLEC2BQ92478 149 aa7.88□□□□□ -1.15
HDAC9-228ENST00000524023 C2CD3Q4AC94 2353 aa7.88□□□□□ -1.15
HDAC9-228ENST00000524023 TEX49A0A1B0GTD5 131 aa7.88□□□□□ -1.15
HDAC9-228ENST00000524023 LST1O00453 97 aa7.88□□□□□ -1.15
HDAC9-228ENST00000524023 ZNF625Q96I27 306 aaPredicted RBP7.88□□□□□ -1.15
HDAC9-228ENST00000524023 PLAC8L1A1L4L8 177 aa7.87□□□□□ -1.15
HDAC9-228ENST00000524023 CMC4P56277 68 aaPredicted RBP7.87□□□□□ -1.15
HDAC9-228ENST00000524023 C2orf82Q6UX34 121 aa7.87□□□□□ -1.15
HDAC9-228ENST00000524023 F5H768 121 aa7.87□□□□□ -1.15
HDAC9-228ENST00000524023 C16orf74Q96GX8 76 aa7.87□□□□□ -1.15
HDAC9-228ENST00000524023 WFDC10AQ9H1F0 79 aa7.87□□□□□ -1.15
HDAC9-228ENST00000524023 TENM4Q6N022 2769 aa7.86□□□□□ -1.15
HDAC9-228ENST00000524023 A0A0U1RRA0 63 aa7.86□□□□□ -1.15
HDAC9-228ENST00000524023 H3BT86 120 aa7.86□□□□□ -1.15
HDAC9-228ENST00000524023 LINC01006Q8NI28 216 aa7.86□□□□□ -1.15
HDAC9-228ENST00000524023 UBE2WQ96B02 151 aa7.86□□□□□ -1.15
HDAC9-228ENST00000524023 UBE2L6O14933 153 aa7.86□□□□□ -1.15
HDAC9-228ENST00000524023 GAGE7O76087 117 aa7.86□□□□□ -1.15
HDAC9-228ENST00000524023 GAGE12FP0CL80 117 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms