RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 RERGLQ9H628 205 aa2.59□□□□□ -1.99
CPNE3-201ENST00000517354 DNAJC15Q9Y5T4 150 aa2.59□□□□□ -1.99
CPNE3-201ENST00000517354 IER3IP1Q9Y5U9 82 aa2.59□□□□□ -1.99
CPNE3-201ENST00000517354 CNTRLQ7Z7A1 2325 aa2.58□□□□□ -2
CPNE3-201ENST00000517354 TRAV14DV4A0A0A6YYC5 116 aa2.58□□□□□ -2
CPNE3-201ENST00000517354 CXorf51AA0A1B0GTR3 108 aa2.58□□□□□ -2
CPNE3-201ENST00000517354 RER1O15258 196 aa2.58□□□□□ -2
CPNE3-201ENST00000517354 PITX3O75364 302 aa2.58□□□□□ -2
CPNE3-201ENST00000517354 SPINK8P0C7L1 97 aa2.58□□□□□ -2
CPNE3-201ENST00000517354 ZNF705BP0CI00 300 aaPredicted RBP2.58□□□□□ -2
CPNE3-201ENST00000517354 SNRPFP62306 86 aaKnown RBP2.58□□□□□ -2
CPNE3-201ENST00000517354 CLLU1Q5K131 121 aa2.58□□□□□ -2
CPNE3-201ENST00000517354 Q6ZS92 163 aa2.58□□□□□ -2
CPNE3-201ENST00000517354 FP248Q71RG6 208 aaPredicted RBP2.58□□□□□ -2
CPNE3-201ENST00000517354 DIRC1Q969H9 104 aa2.58□□□□□ -2
CPNE3-201ENST00000517354 SEC11CQ9BY50 192 aa2.58□□□□□ -2
CPNE3-201ENST00000517354 PRO1933Q9H354 126 aa2.58□□□□□ -2
CPNE3-201ENST00000517354 RPRMQ9NS64 109 aa2.58□□□□□ -2
CPNE3-201ENST00000517354 TAS2R8Q9NYW2 309 aa2.58□□□□□ -2
CPNE3-201ENST00000517354 V9GYS6 101 aa2.58□□□□□ -2
CPNE3-201ENST00000517354 ZNF469Q96JG9 3925 aaPredicted RBP2.58□□□□□ -2
CPNE3-201ENST00000517354 CACNA1CQ13936 2221 aa2.58□□□□□ -2
CPNE3-201ENST00000517354 NOTCH1P46531 2555 aa2.57□□□□□ -2
CPNE3-201ENST00000517354 H3BQF6 201 aa2.57□□□□□ -2
CPNE3-201ENST00000517354 OR1I1O60431 355 aa2.57□□□□□ -2
CPNE3-201ENST00000517354 CD3DP04234 171 aa2.57□□□□□ -2
CPNE3-201ENST00000517354 KRTAP12-3P60328 96 aa2.57□□□□□ -2
CPNE3-201ENST00000517354 MRPL54Q6P161 138 aaKnown RBP2.57□□□□□ -2
CPNE3-201ENST00000517354 FOXI2Q6ZQN5 318 aa2.57□□□□□ -2
CPNE3-201ENST00000517354 OR4B1Q8NGF8 309 aa2.57□□□□□ -2
CPNE3-201ENST00000517354 OR5D16Q8NGK9 328 aa2.57□□□□□ -2
CPNE3-201ENST00000517354 FKBP11Q9NYL4 201 aa2.57□□□□□ -2
CPNE3-201ENST00000517354 NCOA6Q14686 2063 aaPredicted RBP2.57□□□□□ -2
CPNE3-201ENST00000517354 TRAV12-2A0A075B6T6 113 aa2.56□□□□□ -2
CPNE3-201ENST00000517354 GEMIN2O14893 280 aaKnown RBP2.56□□□□□ -2
CPNE3-201ENST00000517354 PYY3Q5JQD4 70 aa2.56□□□□□ -2
CPNE3-201ENST00000517354 C9orf153Q5TBE3 101 aa2.56□□□□□ -2
CPNE3-201ENST00000517354 Q6ZUT4 128 aa2.56□□□□□ -2
CPNE3-201ENST00000517354 KCNRGQ8N5I3 272 aa2.56□□□□□ -2
CPNE3-201ENST00000517354 TTC9CQ8N5M4 171 aa2.56□□□□□ -2
CPNE3-201ENST00000517354 AGPAT4-IT1Q9H0P7 198 aa2.56□□□□□ -2
CPNE3-201ENST00000517354 LY96Q9Y6Y9 160 aa2.56□□□□□ -2
CPNE3-201ENST00000517354 TGP01266 2768 aa2.56□□□□□ -2
CPNE3-201ENST00000517354 TRBV20-1A0A075B6N2 111 aa2.55□□□□□ -2
CPNE3-201ENST00000517354 TRGV2A0A075B6R0 118 aa2.55□□□□□ -2
CPNE3-201ENST00000517354 CHD3Q12873 2000 aaKnown RBP2.55□□□□□ -2
CPNE3-201ENST00000517354 KLRD1Q13241 179 aa2.55□□□□□ -2
CPNE3-201ENST00000517354 CDK5R1Q15078 307 aa2.55□□□□□ -2
CPNE3-201ENST00000517354 Q8IYB0 196 aa2.55□□□□□ -2
CPNE3-201ENST00000517354 INTS1Q8N201 2190 aaKnown RBP2.55□□□□□ -2
CPNE3-201ENST00000517354 OR2T35Q8NGX2 323 aa2.55□□□□□ -2
CPNE3-201ENST00000517354 CCL4L1Q8NHW4 92 aa2.55□□□□□ -2
CPNE3-201ENST00000517354 LSM10Q969L4 123 aaKnown RBP2.55□□□□□ -2
CPNE3-201ENST00000517354 SMR3AQ99954 134 aa2.55□□□□□ -2
CPNE3-201ENST00000517354 RETNLBQ9BQ08 111 aa2.55□□□□□ -2
CPNE3-201ENST00000517354 SLC35B3Q9H1N7 401 aa2.55□□□□□ -2
CPNE3-201ENST00000517354 CHCHD2Q9Y6H1 151 aaPredicted RBP2.55□□□□□ -2
CPNE3-201ENST00000517354 TLN2Q9Y4G6 2542 aa2.54□□□□□ -2
CPNE3-201ENST00000517354 AKAP6Q13023 2319 aa2.54□□□□□ -2
CPNE3-201ENST00000517354 C2orf70A6NJV1 201 aa2.54□□□□□ -2
CPNE3-201ENST00000517354 OOSP1A8MZH6 123 aa2.54□□□□□ -2
CPNE3-201ENST00000517354 IFITM1P13164 125 aa2.54□□□□□ -2
CPNE3-201ENST00000517354 UBA52P62987 128 aaKnown RBP2.54□□□□□ -2
CPNE3-201ENST00000517354 MIC13Q5XKP0 118 aa2.54□□□□□ -2
CPNE3-201ENST00000517354 Q6ZRN7 208 aaPredicted RBP2.54□□□□□ -2
CPNE3-201ENST00000517354 ATOH7Q8N100 152 aa2.54□□□□□ -2
CPNE3-201ENST00000517354 Q8N2B8 174 aa2.54□□□□□ -2
CPNE3-201ENST00000517354 FAM216BQ8N7L0 139 aa2.54□□□□□ -2
CPNE3-201ENST00000517354 Q96M85 177 aa2.54□□□□□ -2
CPNE3-201ENST00000517354 NAA60Q9H7X0 242 aa2.54□□□□□ -2
CPNE3-201ENST00000517354 DOCK10Q96BY6 2186 aa2.54□□□□□ -2
CPNE3-201ENST00000517354 SONP18583 2426 aaKnown RBP2.53□□□□□ -2
CPNE3-201ENST00000517354 ZANQ9Y493 2812 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 ANKRD36A6QL64 1941 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.53□□□□□ -2
CPNE3-201ENST00000517354 TRAV12-1A0A0B4J245 112 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 TRAV17A0A0B4J275 112 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 TRBV6-5A0A0K0K1A5 114 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 PNMA8CA0A1B0GUJ8 204 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 SLC25A4P12235 298 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 FABP4P15090 132 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 PCBD1P61457 104 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 BLCAPP62952 87 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 DEFB113Q30KQ7 82 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 Q56UQ5 140 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 SVBPQ8N300 66 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 OTOSQ8NHW6 89 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 TMEM254Q8TBM7 123 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 PATE1Q8WXA2 126 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 CLEC2BQ92478 149 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 MCEEQ96PE7 176 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 MEGF8Q7Z7M0 2845 aa2.53□□□□□ -2
CPNE3-201ENST00000517354 CCDC88CQ9P219 2028 aa2.52□□□□□ -2.01
CPNE3-201ENST00000517354 VPS13CQ709C8 3753 aa2.52□□□□□ -2.01
CPNE3-201ENST00000517354 B4DSR2 109 aa2.52□□□□□ -2.01
CPNE3-201ENST00000517354 MCRIP1C9JLW8 97 aa2.52□□□□□ -2.01
CPNE3-201ENST00000517354 TPT1P13693 172 aaKnown RBP2.52□□□□□ -2.01
CPNE3-201ENST00000517354 KRTAP6-3Q3LI67 103 aa2.52□□□□□ -2.01
CPNE3-201ENST00000517354 KRTAP13-4Q3LI77 160 aa2.52□□□□□ -2.01
CPNE3-201ENST00000517354 Q6AWC8 147 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms