RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 CELA1Q9UNI1 258 aa6.63□□□□□ -1.35
LIMCH1-218ENST00000513024 DEFB1P60022 68 aa6.63□□□□□ -1.35
LIMCH1-218ENST00000513024 TMEM131Q92545 1883 aa6.63□□□□□ -1.35
LIMCH1-218ENST00000513024 A0A0J9YWU9 116 aa6.63□□□□□ -1.35
LIMCH1-218ENST00000513024 ZFP36P26651 326 aaKnown RBP6.63□□□□□ -1.35
LIMCH1-218ENST00000513024 TMEM89A2RUT3 159 aa6.63□□□□□ -1.35
LIMCH1-218ENST00000513024 C1orf158Q8N1D5 194 aa6.63□□□□□ -1.35
LIMCH1-218ENST00000513024 MYO9AB2RTY4 2548 aa6.63□□□□□ -1.35
LIMCH1-218ENST00000513024 MED14OSP0DP75 135 aa6.63□□□□□ -1.35
LIMCH1-218ENST00000513024 NUP210LQ5VU65 1888 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 TRBV7-6A0A0J9YX20 115 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 C19orf71A6NCJ1 209 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 E7EUB6 86 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 PRYO14603 147 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 APRG1Q8IVJ8 170 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 NRACQ8N912 160 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 NPBQ8NG41 125 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 LINC00308Q8TCZ7 52 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 A8MZ25 164 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 F8W735 103 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 CXCL6P80162 114 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 DEFB136Q30KP8 78 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 USP34Q70CQ2 3546 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 IGLV2-23P01705 113 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 CUL9Q8IWT3 2517 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 KMT2EQ8IZD2 1858 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 IGHV7-81A0A0B4J1V7 117 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 ESRGQ1W209 222 aa6.62□□□□□ -1.35
LIMCH1-218ENST00000513024 K7EQD1 137 aa6.61□□□□□ -1.35
LIMCH1-218ENST00000513024 NEXN-AS1Q8NBZ9 246 aa6.61□□□□□ -1.35
LIMCH1-218ENST00000513024 IGLV11-55A0A075B6I3 123 aa6.61□□□□□ -1.35
LIMCH1-218ENST00000513024 TRBV10-1A0A0K0K1A3 114 aa6.61□□□□□ -1.35
LIMCH1-218ENST00000513024 H7C423 109 aa6.61□□□□□ -1.35
LIMCH1-218ENST00000513024 IGLV2-14P01704 120 aa6.61□□□□□ -1.35
LIMCH1-218ENST00000513024 Q6ZSR3 168 aa6.61□□□□□ -1.35
LIMCH1-218ENST00000513024 TRBV6-1A0A0K0K1D8 114 aa6.61□□□□□ -1.35
LIMCH1-218ENST00000513024 GDF5OSQ5U4N7 250 aa6.61□□□□□ -1.35
LIMCH1-218ENST00000513024 LINC00322Q6ZN03 302 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-218ENST00000513024 WFDC13Q8IUB5 93 aa6.61□□□□□ -1.35
LIMCH1-218ENST00000513024 TP53TG3Q9ULZ0 132 aa6.61□□□□□ -1.35
LIMCH1-218ENST00000513024 ABCA2Q9BZC7 2435 aa6.6□□□□□ -1.35
LIMCH1-218ENST00000513024 LY6G6DO95868 133 aa6.6□□□□□ -1.35
LIMCH1-218ENST00000513024 AJUBAQ96IF1 538 aa6.6□□□□□ -1.35
LIMCH1-218ENST00000513024 LRP4O75096 1905 aa6.6□□□□□ -1.35
LIMCH1-218ENST00000513024 PIEZO1Q92508 2521 aa6.6□□□□□ -1.35
LIMCH1-218ENST00000513024 A0A087WVE0 104 aa6.6□□□□□ -1.35
LIMCH1-218ENST00000513024 TRBV7-7A0A0K0K1E9 115 aa6.6□□□□□ -1.35
LIMCH1-218ENST00000513024 C11orf1Q9H5F2 150 aa6.6□□□□□ -1.35
LIMCH1-218ENST00000513024 IGHV3-30P01768 117 aa6.6□□□□□ -1.35
LIMCH1-218ENST00000513024 IGHV3-30-5P0DP03 117 aa6.6□□□□□ -1.35
LIMCH1-218ENST00000513024 C4orf26Q17RF5 130 aa6.6□□□□□ -1.35
LIMCH1-218ENST00000513024 TMEM263Q8WUH6 116 aaKnown RBP6.6□□□□□ -1.35
LIMCH1-218ENST00000513024 PYGO1Q9Y3Y4 419 aa6.6□□□□□ -1.35
LIMCH1-218ENST00000513024 CPAMD8Q8IZJ3 1885 aa6.59□□□□□ -1.35
LIMCH1-218ENST00000513024 WDFY4Q6ZS81 3184 aa6.59□□□□□ -1.35
LIMCH1-218ENST00000513024 IGHV4-38-2P0DP08 117 aa6.59□□□□□ -1.35
LIMCH1-218ENST00000513024 C9orf85Q96MD7 179 aa6.59□□□□□ -1.35
LIMCH1-218ENST00000513024 C3orf84H3BNL1 204 aa6.59□□□□□ -1.35
LIMCH1-218ENST00000513024 FSHBP01225 129 aa6.59□□□□□ -1.35
LIMCH1-218ENST00000513024 CRYGDP07320 174 aa6.59□□□□□ -1.35
LIMCH1-218ENST00000513024 ESM1Q9NQ30 184 aa6.59□□□□□ -1.35
LIMCH1-218ENST00000513024 ZNF22P17026 224 aaPredicted RBP6.59□□□□□ -1.36
LIMCH1-218ENST00000513024 CEMP1Q6PRD7 247 aaPredicted RBP6.59□□□□□ -1.36
LIMCH1-218ENST00000513024 FAM30AQ9NZY2 134 aa6.59□□□□□ -1.36
LIMCH1-218ENST00000513024 IGLV2-8P01709 118 aa6.58□□□□□ -1.36
LIMCH1-218ENST00000513024 GYPEP15421 78 aa6.58□□□□□ -1.36
LIMCH1-218ENST00000513024 LIMD2Q9BT23 127 aa6.58□□□□□ -1.36
LIMCH1-218ENST00000513024 VPS13AQ96RL7 3174 aa6.58□□□□□ -1.36
LIMCH1-218ENST00000513024 DNAJC9-AS1A6NH13 148 aa6.58□□□□□ -1.36
LIMCH1-218ENST00000513024 GRNP28799 593 aaKnown RBP6.58□□□□□ -1.36
LIMCH1-218ENST00000513024 ODF3L1Q8IXM7 274 aa6.58□□□□□ -1.36
LIMCH1-218ENST00000513024 MYO15AQ9UKN7 3530 aa6.58□□□□□ -1.36
LIMCH1-218ENST00000513024 CCDC168Q8NDH2 2452 aa6.57□□□□□ -1.36
LIMCH1-218ENST00000513024 Q6ZPA2 131 aa6.57□□□□□ -1.36
LIMCH1-218ENST00000513024 C11orf45Q8TAV5 145 aa6.57□□□□□ -1.36
LIMCH1-218ENST00000513024 LINC00208Q96KT6 92 aa6.57□□□□□ -1.36
LIMCH1-218ENST00000513024 SLURP1P55000 103 aa6.57□□□□□ -1.36
LIMCH1-218ENST00000513024 C6orf99Q4VX62 202 aa6.57□□□□□ -1.36
LIMCH1-218ENST00000513024 IBA57-AS1B1ANH7 110 aa6.57□□□□□ -1.36
LIMCH1-218ENST00000513024 ZNF80P51504 273 aaPredicted RBP6.57□□□□□ -1.36
LIMCH1-218ENST00000513024 Q8N6K4 173 aa6.57□□□□□ -1.36
LIMCH1-218ENST00000513024 BEAN1Q3B7T3 259 aa6.57□□□□□ -1.36
LIMCH1-218ENST00000513024 KRTAP27-1Q3LI81 207 aa6.57□□□□□ -1.36
LIMCH1-218ENST00000513024 POM121L12Q8N7R1 296 aa6.57□□□□□ -1.36
LIMCH1-218ENST00000513024 UBE2D2P62837 147 aa6.56□□□□□ -1.36
LIMCH1-218ENST00000513024 CDKN2A-AS1Q9UH64 79 aa6.56□□□□□ -1.36
LIMCH1-218ENST00000513024 MED12LQ86YW9 2145 aa6.56□□□□□ -1.36
LIMCH1-218ENST00000513024 C16orf74Q96GX8 76 aa6.56□□□□□ -1.36
LIMCH1-218ENST00000513024 C22orf34Q6ZV56 151 aa6.56□□□□□ -1.36
LIMCH1-218ENST00000513024 COL4A2P08572 1712 aa6.56□□□□□ -1.36
LIMCH1-218ENST00000513024 Q8N9W7 124 aa6.56□□□□□ -1.36
LIMCH1-218ENST00000513024 C4orf3Q8WVX3 66 aa6.55□□□□□ -1.36
LIMCH1-218ENST00000513024 F8WDY8 70 aa6.55□□□□□ -1.36
LIMCH1-218ENST00000513024 CRYGAP11844 174 aa6.55□□□□□ -1.36
LIMCH1-218ENST00000513024 Q6ZQY7 126 aa6.55□□□□□ -1.36
LIMCH1-218ENST00000513024 TMEM254Q8TBM7 123 aa6.55□□□□□ -1.36
LIMCH1-218ENST00000513024 IGKV1D-37A0A075B6S9 117 aa6.55□□□□□ -1.36
LIMCH1-218ENST00000513024 ZNF295-AS1Q8N0V1 137 aa6.55□□□□□ -1.36
LIMCH1-218ENST00000513024 DMDP11532 3685 aa6.55□□□□□ -1.36
LIMCH1-218ENST00000513024 MBD6Q96DN6 1003 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms