RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 ZFAND6Q6FIF0 208 aa12.89□□□□□ -0.35
CCHCR1-228ENST00000509552 ITPR3Q14573 2671 aa12.89□□□□□ -0.35
CCHCR1-228ENST00000509552 TRBV10-1A0A0K0K1A3 114 aa12.89□□□□□ -0.35
CCHCR1-228ENST00000509552 A8MZ25 164 aa12.89□□□□□ -0.35
CCHCR1-228ENST00000509552 MIAQ16674 131 aa12.89□□□□□ -0.35
CCHCR1-228ENST00000509552 PPDPFLQ8WWR9 84 aa12.89□□□□□ -0.35
CCHCR1-228ENST00000509552 CDKN2A-AS1Q9UH64 79 aa12.89□□□□□ -0.35
CCHCR1-228ENST00000509552 K7EQD1 137 aa12.88□□□□□ -0.35
CCHCR1-228ENST00000509552 SCGB1A1P11684 91 aa12.88□□□□□ -0.35
CCHCR1-228ENST00000509552 ADAMTSL4-AS1Q5T5F5 129 aa12.88□□□□□ -0.35
CCHCR1-228ENST00000509552 SONP18583 2426 aaKnown RBP12.88□□□□□ -0.35
CCHCR1-228ENST00000509552 IGLV5-45A0A087WSX0 123 aa12.88□□□□□ -0.35
CCHCR1-228ENST00000509552 YAE1D1Q9NRH1 226 aa12.88□□□□□ -0.35
CCHCR1-228ENST00000509552 ZNF469Q96JG9 3925 aaPredicted RBP12.87□□□□□ -0.35
CCHCR1-228ENST00000509552 TRAV4A0A0B4J268 109 aa12.87□□□□□ -0.35
CCHCR1-228ENST00000509552 SMAGPQ0VAQ4 97 aa12.87□□□□□ -0.35
CCHCR1-228ENST00000509552 DAZ2Q13117 558 aaKnown RBP12.87□□□□□ -0.35
CCHCR1-228ENST00000509552 Q6ZTI0 123 aa12.87□□□□□ -0.35
CCHCR1-228ENST00000509552 DAZ4Q86SG3 579 aaKnown RBP12.87□□□□□ -0.35
CCHCR1-228ENST00000509552 DAZ3Q9NR90 486 aaKnown RBP12.87□□□□□ -0.35
CCHCR1-228ENST00000509552 HERVK_113P63121 156 aa12.87□□□□□ -0.35
CCHCR1-228ENST00000509552 TIMM17BO60830 172 aa12.86□□□□□ -0.35
CCHCR1-228ENST00000509552 WNK1Q9H4A3 2382 aa12.86□□□□□ -0.35
CCHCR1-228ENST00000509552 SLC25A20O43772 301 aa12.85□□□□□ -0.35
CCHCR1-228ENST00000509552 ATXN8Q156A1 80 aa12.85□□□□□ -0.35
CCHCR1-228ENST00000509552 TRBV30A0A0K0K1B3 111 aa12.85□□□□□ -0.35
CCHCR1-228ENST00000509552 C9JAW5 83 aa12.85□□□□□ -0.35
CCHCR1-228ENST00000509552 TMEM101Q96IK0 257 aa12.85□□□□□ -0.35
CCHCR1-228ENST00000509552 NDUFA1O15239 70 aa12.84□□□□□ -0.35
CCHCR1-228ENST00000509552 LINC01006Q8NI28 216 aa12.84□□□□□ -0.35
CCHCR1-228ENST00000509552 RNF183Q96D59 192 aa12.84□□□□□ -0.35
CCHCR1-228ENST00000509552 CARD19Q96LW7 228 aa12.84□□□□□ -0.35
CCHCR1-228ENST00000509552 NOP10Q9NPE3 64 aaKnown RBP12.84□□□□□ -0.35
CCHCR1-228ENST00000509552 CSDC2Q9Y534 153 aaKnown RBP12.84□□□□□ -0.35
CCHCR1-228ENST00000509552 M0QXV9 152 aa12.83□□□□□ -0.36
CCHCR1-228ENST00000509552 IFITM1P13164 125 aa12.83□□□□□ -0.36
CCHCR1-228ENST00000509552 NPC2P61916 151 aa12.83□□□□□ -0.36
CCHCR1-228ENST00000509552 CIRBPQ14011 172 aaKnown RBP12.83□□□□□ -0.36
CCHCR1-228ENST00000509552 ANKRD29Q8N6D5 301 aa12.83□□□□□ -0.36
CCHCR1-228ENST00000509552 C16orf95Q9H693 158 aa12.83□□□□□ -0.36
CCHCR1-228ENST00000509552 LINC00694P0DN24 101 aa12.83□□□□□ -0.36
CCHCR1-228ENST00000509552 COX6A2Q02221 97 aa12.83□□□□□ -0.36
CCHCR1-228ENST00000509552 LINC00242Q5T6M2 205 aa12.83□□□□□ -0.36
CCHCR1-228ENST00000509552 GAGE12JA6NER3 117 aa12.82□□□□□ -0.36
CCHCR1-228ENST00000509552 RNASE1P07998 156 aaKnown RBP12.82□□□□□ -0.36
CCHCR1-228ENST00000509552 GAGE4Q13068 117 aa12.82□□□□□ -0.36
CCHCR1-228ENST00000509552 GAGE5Q13069 117 aa12.82□□□□□ -0.36
CCHCR1-228ENST00000509552 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.82□□□□□ -0.36
CCHCR1-228ENST00000509552 C16orf74Q96GX8 76 aa12.82□□□□□ -0.36
CCHCR1-228ENST00000509552 TRIAP1O43715 76 aa12.82□□□□□ -0.36
CCHCR1-228ENST00000509552 NTM-AS1Q6ZSK4 140 aa12.82□□□□□ -0.36
CCHCR1-228ENST00000509552 FAM19A3Q7Z5A8 133 aa12.82□□□□□ -0.36
CCHCR1-228ENST00000509552 ICOSQ9Y6W8 199 aa12.81□□□□□ -0.36
CCHCR1-228ENST00000509552 FLNAP21333 2647 aaKnown RBP12.81□□□□□ -0.36
CCHCR1-228ENST00000509552 COX6CP09669 75 aa12.8□□□□□ -0.36
CCHCR1-228ENST00000509552 IGLV5-39A0A0G2JS06 123 aa12.8□□□□□ -0.36
CCHCR1-228ENST00000509552 LINC01620Q4KN68 170 aa12.8□□□□□ -0.36
CCHCR1-228ENST00000509552 FAM110AQ9BQ89 295 aa12.8□□□□□ -0.36
CCHCR1-228ENST00000509552 TRGV2A0A075B6R0 118 aa12.79□□□□□ -0.36
CCHCR1-228ENST00000509552 TRAV13-1A0A0B4J241 112 aa12.79□□□□□ -0.36
CCHCR1-228ENST00000509552 GIG44P09565 113 aaPredicted RBP12.79□□□□□ -0.36
CCHCR1-228ENST00000509552 CCDC168Q8NDH2 2452 aa12.79□□□□□ -0.36
CCHCR1-228ENST00000509552 UBE2L6O14933 153 aa12.79□□□□□ -0.36
CCHCR1-228ENST00000509552 IGLV1-51P01701 117 aa12.79□□□□□ -0.36
CCHCR1-228ENST00000509552 RPL35AP18077 110 aaKnown RBP12.79□□□□□ -0.36
CCHCR1-228ENST00000509552 CDIP1Q9H305 208 aa12.79□□□□□ -0.36
CCHCR1-228ENST00000509552 Q9H8V8 135 aa12.79□□□□□ -0.36
CCHCR1-228ENST00000509552 NF1P21359 2839 aa12.79□□□□□ -0.36
CCHCR1-228ENST00000509552 HIST2H2BCQ6DN03 193 aa12.78□□□□□ -0.36
CCHCR1-228ENST00000509552 CDC42SE2Q9NRR3 84 aa12.78□□□□□ -0.36
CCHCR1-228ENST00000509552 CIDEAO60543 219 aa12.78□□□□□ -0.36
CCHCR1-228ENST00000509552 GAGE7O76087 117 aa12.78□□□□□ -0.36
CCHCR1-228ENST00000509552 NDUFA7O95182 113 aa12.78□□□□□ -0.36
CCHCR1-228ENST00000509552 GAGE12FP0CL80 117 aa12.78□□□□□ -0.36
CCHCR1-228ENST00000509552 GAGE12GP0CL81 117 aa12.78□□□□□ -0.36
CCHCR1-228ENST00000509552 GAGE12IP0CL82 117 aa12.78□□□□□ -0.36
CCHCR1-228ENST00000509552 KRTAP1-1Q07627 177 aa12.78□□□□□ -0.36
CCHCR1-228ENST00000509552 WFDC10AQ9H1F0 79 aa12.78□□□□□ -0.36
CCHCR1-228ENST00000509552 NBPF19A0A087WUL8 3843 aa12.78□□□□□ -0.36
CCHCR1-228ENST00000509552 DAND5Q8N907 189 aa12.77□□□□□ -0.36
CCHCR1-228ENST00000509552 TMEM243Q9BU79 118 aa12.77□□□□□ -0.36
CCHCR1-228ENST00000509552 SMIM1B2RUZ4 78 aa12.76□□□□□ -0.37
CCHCR1-228ENST00000509552 COPS9Q8WXC6 57 aa12.76□□□□□ -0.37
CCHCR1-228ENST00000509552 PLAC8L1A1L4L8 177 aa12.76□□□□□ -0.37
CCHCR1-228ENST00000509552 TRBV10-2A0A0K0K1G8 114 aa12.75□□□□□ -0.37
CCHCR1-228ENST00000509552 TMEM262E9PQX1 116 aa12.75□□□□□ -0.37
CCHCR1-228ENST00000509552 RPL13AP40429 203 aaKnown RBP12.75□□□□□ -0.37
CCHCR1-228ENST00000509552 C19orf73Q9NVV2 129 aa12.75□□□□□ -0.37
CCHCR1-228ENST00000509552 TRBV6-4A0A1B0GX49 114 aa12.74□□□□□ -0.37
CCHCR1-228ENST00000509552 LINC00308Q8TCZ7 52 aa12.74□□□□□ -0.37
CCHCR1-228ENST00000509552 ZNF625Q96I27 306 aaPredicted RBP12.74□□□□□ -0.37
CCHCR1-228ENST00000509552 OVOL2Q9BRP0 275 aa12.74□□□□□ -0.37
CCHCR1-228ENST00000509552 TRGV4A0A0C4DH28 118 aa12.73□□□□□ -0.37
CCHCR1-228ENST00000509552 LINC01600Q96MT4 127 aa12.73□□□□□ -0.37
CCHCR1-228ENST00000509552 H7C423 109 aa12.73□□□□□ -0.37
CCHCR1-228ENST00000509552 PRIMA1Q86XR5 153 aa12.73□□□□□ -0.37
CCHCR1-228ENST00000509552 CSNK1G2-AS1Q8NCQ2 148 aa12.73□□□□□ -0.37
CCHCR1-228ENST00000509552 NTN5Q8WTR8 489 aaPredicted RBP12.72□□□□□ -0.37
CCHCR1-228ENST00000509552 SETD2Q9BYW2 2564 aaPredicted RBP12.72□□□□□ -0.37
CCHCR1-228ENST00000509552 MEIG1Q5JSS6 88 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms