RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 IGKV1-16P04430 117 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 ARL14EPLP0DKL9 152 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 IGHV3-30-5P0DP03 117 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 IGHV3-43DP0DP04 118 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 RPL27AP46776 148 aaKnown RBP1.07□□□□□ -2.24
NUP54-208ENST00000508604 ZNF138P52744 262 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 LINC01590Q5TEZ4 76 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 LYPD2Q6UXB3 125 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 Q6ZR03 302 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 MIR17HGQ75NE6 70 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 ORMDL3Q8N138 153 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 Q8N6K4 173 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 TMEM263Q8WUH6 116 aaKnown RBP1.07□□□□□ -2.24
NUP54-208ENST00000508604 LIMD2Q9BT23 127 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 RPP21Q9H633 154 aaKnown RBP1.07□□□□□ -2.24
NUP54-208ENST00000508604 PROK2Q9HC23 129 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 XAGE1AQ9HD64 81 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 ZNF355PQ9NSJ1 428 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 ZNF706Q9Y5V0 76 aaPredicted RBP1.07□□□□□ -2.24
NUP54-208ENST00000508604 LHFPL6Q9Y693 200 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 SSC5DA1L4H1 1573 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 HEATR1Q9H583 2144 aaKnown RBP1.06□□□□□ -2.24
NUP54-208ENST00000508604 IGKV1-27A0A075B6S5 117 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 TRAV22A0A0B4J277 110 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 IGKV1-8A0A0C4DH67 115 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 A0A0J9YX75 114 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 A0A0J9YY99 117 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 A0A1B0GUT8 65 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 hDV103S1A0JD37 113 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 SDHAF1A6NFY7 115 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 C11orf86A6NJI1 115 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 ZNF815PA8K554 130 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 C16orf90A8MZG2 172 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 E7EUB6 86 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 LEPROTO15243 131 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 PPP1R17O96001 155 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 DNAL4O96015 105 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 COX6B1P14854 86 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 HMGA1P17096 107 aaKnown RBP1.06□□□□□ -2.24
NUP54-208ENST00000508604 FXYD3Q14802 87 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 SOSTDC1Q6X4U4 206 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 LINC01560Q8TB33 94 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 ARHGAP5-AS1Q96IT6 56 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 SCGB3A1Q96QR1 104 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 BPESC1Q9GZL8 116 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 CDC42SE1Q9NRR8 79 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 DEC1Q9P2X7 70 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 NDUFA12Q9UI09 145 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 ICOSQ9Y6W8 199 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 PCNX2A6NKB5 2137 aa1.06□□□□□ -2.24
NUP54-208ENST00000508604 MPDZO75970 2070 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 IGLV3-12A0A075B6K2 115 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 IGLV3-9A0A075B6K5 115 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 IGHV5-51A0A0C4DH38 117 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 TRBV7-4A0A0J9YYF1 115 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 TRBV6-1A0A0K0K1D8 114 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 HCG22E2RYF7 251 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 BGLAPP02818 100 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 TLX1NBP0CAT3 122 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 EDDM3BP56851 147 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 FXYD7P58549 80 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 KRTAP6-3Q3LI67 103 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 FAM229BQ4G0N7 80 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 C9orf116Q5BN46 136 aaPredicted RBP1.05□□□□□ -2.24
NUP54-208ENST00000508604 SPANXN5Q5MJ07 72 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 C15orf56Q8N910 161 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 OBSCN-AS1Q96MR7 158 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 LINC00467Q9BRT7 94 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 TTTY13Q9BZ97 58 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 TMEM14BQ9NUH8 114 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 R4GMQ9 66 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 MDC1Q14676 2089 aaKnown RBP1.05□□□□□ -2.24
NUP54-208ENST00000508604 DSCAML1Q8TD84 2053 aa1.05□□□□□ -2.24
NUP54-208ENST00000508604 TRBV6-8A0A0A6YYG3 113 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 IGKV1-12A0A0C4DH73 117 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 LOC101927531A0A1B0GV80 90 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 D6R8Y8 96 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 C5orf67F2Z3F1 127 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 IGKV1D-12P01611 117 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 TRGV3P03979 118 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 SPINT3P49223 89 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 BSPH1Q075Z2 132 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 Q5VV11 94 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 SFTA2Q6UW10 78 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 CAMK2N1Q7Z7J9 78 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 MUSTN1Q8IVN3 82 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 PFN4Q8NHR9 129 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 TMEM254Q8TBM7 123 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 KLF14Q8TD94 323 aaPredicted RBP1.04□□□□□ -2.24
NUP54-208ENST00000508604 TTTY10Q9BZA0 68 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 TIMM8BQ9Y5J9 83 aaPredicted RBP1.04□□□□□ -2.24
NUP54-208ENST00000508604 TET1Q8NFU7 2136 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 TRAV23DV6A0A075B6W5 121 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 A0A087WVE0 104 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 IGHV3-72A0A0B4J1Y9 119 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 IGKV3D-7A0A0C4DH55 119 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 IGIPA6NJ69 53 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 JMJD7-PLA2G4BH0Y9G9 81 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 CHKB-CPT1BH3BT56 60 aa1.04□□□□□ -2.24
NUP54-208ENST00000508604 M0R135 149 aa1.04□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms