RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-231ENST00000498751 GAGE12FP0CL80 117 aa5.4□□□□□ -1.54
SYNE1-231ENST00000498751 GAGE12GP0CL81 117 aa5.4□□□□□ -1.54
SYNE1-231ENST00000498751 GAGE12IP0CL82 117 aa5.4□□□□□ -1.54
SYNE1-231ENST00000498751 ZNF22P17026 224 aaPredicted RBP5.4□□□□□ -1.54
SYNE1-231ENST00000498751 HINT1P49773 126 aaPredicted RBP5.4□□□□□ -1.54
SYNE1-231ENST00000498751 RNF183Q96D59 192 aa5.4□□□□□ -1.54
SYNE1-231ENST00000498751 PRADC1Q9BSG0 188 aa5.4□□□□□ -1.54
SYNE1-231ENST00000498751 SPANXB1Q9NS25 103 aaPredicted RBP5.4□□□□□ -1.54
SYNE1-231ENST00000498751 TRAV26-1A0A087WT03 109 aa5.39□□□□□ -1.55
SYNE1-231ENST00000498751 A0A1B0GWB2 263 aa5.39□□□□□ -1.55
SYNE1-231ENST00000498751 LEPROTO15243 131 aa5.39□□□□□ -1.55
SYNE1-231ENST00000498751 UBE2D1P51668 147 aa5.39□□□□□ -1.55
SYNE1-231ENST00000498751 KRTAP19-4Q3LI73 84 aa5.39□□□□□ -1.55
SYNE1-231ENST00000498751 MAPKAPK5-AS1Q8N8E1 139 aa5.39□□□□□ -1.55
SYNE1-231ENST00000498751 Q8NAQ8 132 aa5.39□□□□□ -1.55
SYNE1-231ENST00000498751 OR5A1Q8NGJ0 315 aa5.39□□□□□ -1.55
SYNE1-231ENST00000498751 CHAC1Q9BUX1 264 aa5.39□□□□□ -1.55
SYNE1-231ENST00000498751 TP73-AS1Q9UF72 201 aa5.39□□□□□ -1.55
SYNE1-231ENST00000498751 PRO0255Q9UI72 69 aa5.39□□□□□ -1.55
SYNE1-231ENST00000498751 COX11Q9Y6N1 276 aa5.39□□□□□ -1.55
SYNE1-231ENST00000498751 TRBV6-8A0A0A6YYG3 113 aa5.38□□□□□ -1.55
SYNE1-231ENST00000498751 A6NDN8 102 aa5.38□□□□□ -1.55
SYNE1-231ENST00000498751 H3BRM9 83 aa5.38□□□□□ -1.55
SYNE1-231ENST00000498751 TAX1BP3O14907 124 aa5.38□□□□□ -1.55
SYNE1-231ENST00000498751 IGHV4-30-4P0DP06 118 aa5.38□□□□□ -1.55
SYNE1-231ENST00000498751 PLEKHB2Q96CS7 222 aa5.38□□□□□ -1.55
SYNE1-231ENST00000498751 PPDPFQ9H3Y8 114 aa5.38□□□□□ -1.55
SYNE1-231ENST00000498751 CDC42SE2Q9NRR3 84 aa5.38□□□□□ -1.55
SYNE1-231ENST00000498751 NOTCH2Q04721 2471 aa5.37□□□□□ -1.55
SYNE1-231ENST00000498751 TRAV8-6A0A0B4J262 113 aa5.37□□□□□ -1.55
SYNE1-231ENST00000498751 TRGV4A0A0C4DH28 118 aa5.37□□□□□ -1.55
SYNE1-231ENST00000498751 IGHV1-58A0A0C4DH39 117 aa5.37□□□□□ -1.55
SYNE1-231ENST00000498751 A0A0J9YXV3 536 aa5.37□□□□□ -1.55
SYNE1-231ENST00000498751 A0A0J9YY99 117 aa5.37□□□□□ -1.55
SYNE1-231ENST00000498751 A0A1B0GUV1 79 aa5.37□□□□□ -1.55
SYNE1-231ENST00000498751 HERVK_113P63121 156 aa5.37□□□□□ -1.55
SYNE1-231ENST00000498751 Q6ZUT4 128 aa5.37□□□□□ -1.55
SYNE1-231ENST00000498751 CEND1Q8N111 149 aa5.37□□□□□ -1.55
SYNE1-231ENST00000498751 OPRPNQ99935 248 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-231ENST00000498751 TMEM243Q9BU79 118 aa5.37□□□□□ -1.55
SYNE1-231ENST00000498751 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-231ENST00000498751 IGHV4-28A0A0C4DH34 117 aa5.36□□□□□ -1.55
SYNE1-231ENST00000498751 IGHV3-38A0A0C4DH36 116 aa5.36□□□□□ -1.55
SYNE1-231ENST00000498751 IGLV5-39A0A0G2JS06 123 aa5.36□□□□□ -1.55
SYNE1-231ENST00000498751 IGKV2-29A2NJV5 120 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-231ENST00000498751 GAGE12JA6NER3 117 aa5.36□□□□□ -1.55
SYNE1-231ENST00000498751 ZNF815PA8K554 130 aa5.36□□□□□ -1.55
SYNE1-231ENST00000498751 H3BNG1 76 aa5.36□□□□□ -1.55
SYNE1-231ENST00000498751 J3QQQ9 107 aa5.36□□□□□ -1.55
SYNE1-231ENST00000498751 CCL25O15444 150 aa5.36□□□□□ -1.55
SYNE1-231ENST00000498751 GAGE4Q13068 117 aa5.36□□□□□ -1.55
SYNE1-231ENST00000498751 GAGE5Q13069 117 aa5.36□□□□□ -1.55
SYNE1-231ENST00000498751 GAGE13Q4V321 117 aa5.36□□□□□ -1.55
SYNE1-231ENST00000498751 TMEM170BQ5T4T1 132 aa5.36□□□□□ -1.55
SYNE1-231ENST00000498751 FAM222AQ5U5X8 452 aa5.36□□□□□ -1.55
SYNE1-231ENST00000498751 Q6ZVH6 145 aa5.36□□□□□ -1.55
SYNE1-231ENST00000498751 PRIMA1Q86XR5 153 aa5.36□□□□□ -1.55
SYNE1-231ENST00000498751 PHLDA1Q8WV24 401 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-231ENST00000498751 TTTY13Q9BZ97 58 aa5.36□□□□□ -1.55
SYNE1-231ENST00000498751 WNK1Q9H4A3 2382 aa5.35□□□□□ -1.55
SYNE1-231ENST00000498751 TIMM17BO60830 172 aa5.35□□□□□ -1.55
SYNE1-231ENST00000498751 SPART-AS1P0CW21 52 aa5.35□□□□□ -1.55
SYNE1-231ENST00000498751 PTTG1IPP53801 180 aa5.35□□□□□ -1.55
SYNE1-231ENST00000498751 BATFQ16520 125 aa5.35□□□□□ -1.55
SYNE1-231ENST00000498751 DEFB135Q30KP9 77 aa5.35□□□□□ -1.55
SYNE1-231ENST00000498751 LINC00242Q5T6M2 205 aa5.35□□□□□ -1.55
SYNE1-231ENST00000498751 ZFAND6Q6FIF0 208 aa5.35□□□□□ -1.55
SYNE1-231ENST00000498751 DGAT2L7PQ6IED9 249 aa5.35□□□□□ -1.55
SYNE1-231ENST00000498751 SH2D6Q7Z4S9 175 aa5.35□□□□□ -1.55
SYNE1-231ENST00000498751 LINC01561Q8N1V8 128 aa5.35□□□□□ -1.55
SYNE1-231ENST00000498751 C3orf56Q8N813 242 aa5.35□□□□□ -1.55
SYNE1-231ENST00000498751 VSIG2Q96IQ7 327 aa5.35□□□□□ -1.55
SYNE1-231ENST00000498751 KRTAP4-2Q9BYR5 136 aa5.35□□□□□ -1.55
SYNE1-231ENST00000498751 C11orf68Q9H3H3 251 aaKnown RBP5.35□□□□□ -1.55
SYNE1-231ENST00000498751 A0A0J9YXY3 114 aa5.34□□□□□ -1.55
SYNE1-231ENST00000498751 C9orf118A6NHY6 69 aa5.34□□□□□ -1.55
SYNE1-231ENST00000498751 ATP5G1P05496 136 aa5.34□□□□□ -1.55
SYNE1-231ENST00000498751 IGHV3-30-3P0DP02 117 aa5.34□□□□□ -1.55
SYNE1-231ENST00000498751 FXYD2P54710 66 aa5.34□□□□□ -1.55
SYNE1-231ENST00000498751 TSPEAR-AS2P59090 65 aa5.34□□□□□ -1.55
SYNE1-231ENST00000498751 CEMP1Q6PRD7 247 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-231ENST00000498751 ATP6V0E2Q8NHE4 81 aa5.34□□□□□ -1.55
SYNE1-231ENST00000498751 F8P00451 2351 aa5.33□□□□□ -1.56
SYNE1-231ENST00000498751 LOC100131303A0A0U1RQF7 123 aa5.33□□□□□ -1.56
SYNE1-231ENST00000498751 LGALS3P17931 250 aaKnown RBP5.33□□□□□ -1.56
SYNE1-231ENST00000498751 EMP1P54849 157 aa5.33□□□□□ -1.56
SYNE1-231ENST00000498751 KRTAP10-11P60412 298 aa5.33□□□□□ -1.56
SYNE1-231ENST00000498751 UBE2V1Q13404 147 aa5.33□□□□□ -1.56
SYNE1-231ENST00000498751 DEFB104AQ8WTQ1 72 aa5.33□□□□□ -1.56
SYNE1-231ENST00000498751 TMEM101Q96IK0 257 aa5.33□□□□□ -1.56
SYNE1-231ENST00000498751 SPANXDQ9BXN6 97 aa5.33□□□□□ -1.56
SYNE1-231ENST00000498751 SPANXCQ9NY87 97 aa5.33□□□□□ -1.56
SYNE1-231ENST00000498751 MAST4O15021 2626 aa5.33□□□□□ -1.56
SYNE1-231ENST00000498751 CYSRT1A8MQ03 144 aa5.32□□□□□ -1.56
SYNE1-231ENST00000498751 F5H768 121 aa5.32□□□□□ -1.56
SYNE1-231ENST00000498751 UBE2L6O14933 153 aa5.32□□□□□ -1.56
SYNE1-231ENST00000498751 IGHV3-30P01768 117 aa5.32□□□□□ -1.56
SYNE1-231ENST00000498751 SMIM13P0DJ93 91 aa5.32□□□□□ -1.56
SYNE1-231ENST00000498751 IGHV3-30-5P0DP03 117 aa5.32□□□□□ -1.56
SYNE1-231ENST00000498751 DEFB130BP0DP73 79 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms