RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 HIST1H2BAQ96A08 127 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 ZC2HC1AQ96GY0 325 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 DERL1Q9BUN8 251 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 SEC11CQ9BY50 192 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 EIF5A2Q9GZV4 153 aaKnown RBP2.47□□□□□ -2.01
USP54-217ENST00000498213 DAZ3Q9NR90 486 aaKnown RBP2.47□□□□□ -2.01
USP54-217ENST00000498213 VAX2Q9UIW0 290 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 ZFP30Q9Y2G7 519 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 ARL2-SNX15V9GYD0 113 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 TRBV7-3A0A075B6L6 115 aa2.46□□□□□ -2.02
USP54-217ENST00000498213 IGKV2-40A0A087WW87 121 aaPredicted RBP2.46□□□□□ -2.02
USP54-217ENST00000498213 TRBV6-1A0A0K0K1D8 114 aa2.46□□□□□ -2.02
USP54-217ENST00000498213 A0A1W2PRE2 83 aa2.46□□□□□ -2.02
USP54-217ENST00000498213 F6UZH7 168 aa2.46□□□□□ -2.02
USP54-217ENST00000498213 IFNA1P01562 189 aa2.46□□□□□ -2.02
USP54-217ENST00000498213 IGKV2D-40P01614 121 aaPredicted RBP2.46□□□□□ -2.02
USP54-217ENST00000498213 TCRAP04437 139 aa2.46□□□□□ -2.02
USP54-217ENST00000498213 S100A9P06702 114 aaKnown RBP2.46□□□□□ -2.02
USP54-217ENST00000498213 S100A4P26447 101 aaKnown RBP2.46□□□□□ -2.02
USP54-217ENST00000498213 CEBPGP53567 150 aa2.46□□□□□ -2.02
USP54-217ENST00000498213 GNG5P63218 68 aa2.46□□□□□ -2.02
USP54-217ENST00000498213 ZNF674Q2M3X9 581 aa2.46□□□□□ -2.02
USP54-217ENST00000498213 MUC21Q5SSG8 566 aa2.46□□□□□ -2.02
USP54-217ENST00000498213 UFSP1Q6NVU6 142 aa2.46□□□□□ -2.02
USP54-217ENST00000498213 CBLN2Q8IUK8 224 aa2.46□□□□□ -2.02
USP54-217ENST00000498213 ZFP82Q8N141 532 aa2.46□□□□□ -2.02
USP54-217ENST00000498213 C11orf52Q96A22 123 aa2.46□□□□□ -2.02
USP54-217ENST00000498213 Q9HAA7 133 aa2.46□□□□□ -2.02
USP54-217ENST00000498213 MANBALQ9NQG1 85 aa2.46□□□□□ -2.02
USP54-217ENST00000498213 SSPOA2VEC9 5147 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 IGKV2D-24A0A075B6R9 120 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 TRBV6-8A0A0A6YYG3 113 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 C7orf77A4D0Y5 90 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 C5orf52A6NGY3 159 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 ZNF727A8MUV8 499 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 TMEM250H0YL14 139 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 H7C1H1 209 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 K7EN84 100 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 PEX7O00628 323 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 RAB4BP61018 213 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 RPL23P62829 140 aaKnown RBP2.45□□□□□ -2.02
USP54-217ENST00000498213 FLI1Q01543 452 aaPredicted RBP2.45□□□□□ -2.02
USP54-217ENST00000498213 PRR9Q5T870 116 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 GOLT1AQ6ZVE7 132 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 SVBPQ8N300 66 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 OCC1Q8TAD7 63 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 Q8TAT8 98 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 C7orf33Q8WU49 177 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 SFRP2Q96HF1 295 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 DNAJC30Q96LL9 226 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 YPEL4Q96NS1 127 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 SMDT1Q9H4I9 107 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 NAGKQ9UJ70 344 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 RPH3ALQ9UNE2 315 aa2.45□□□□□ -2.02
USP54-217ENST00000498213 SYNE2Q8WXH0 6885 aaKnown RBP2.45□□□□□ -2.02
USP54-217ENST00000498213 IGHV3-64A0A075B6Q5 118 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 M0R036 132 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 GNRH2O43555 120 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 PDE6DO43924 150 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 NDUFS6O75380 124 aaKnown RBP2.44□□□□□ -2.02
USP54-217ENST00000498213 GCGP01275 180 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 IGHV3-30P01768 117 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 IGHV3-33P01772 117 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 IGHV3-30-3P0DP02 117 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 IGHV3-30-5P0DP03 117 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 RNASE3P12724 160 aaKnown RBP2.44□□□□□ -2.02
USP54-217ENST00000498213 TAGLN2P37802 199 aaKnown RBP2.44□□□□□ -2.02
USP54-217ENST00000498213 RPL35P42766 123 aaKnown RBP2.44□□□□□ -2.02
USP54-217ENST00000498213 UBE2D3P61077 147 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 UBE2D2P62837 147 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 CENPWQ5EE01 88 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 FAM162BQ5T6X4 162 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 SPINK6Q6UWN8 80 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 SDIM1Q6ZPB5 146 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 Q6ZVQ6 151 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 LINC01551Q86U37 167 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 BAALCQ8WXS3 180 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 ISOC2Q96AB3 205 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 SMIM12Q96EX1 92 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 FMC1Q96HJ9 113 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 PGLYRP4Q96LB8 373 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 LINC01600Q96MT4 127 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 SMIM7Q9BQ49 75 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 NAT8Q9UHE5 227 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 EPDR1Q9UM22 224 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 PSG8Q9UQ74 426 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 PHLDA3Q9Y5J5 127 aa2.44□□□□□ -2.02
USP54-217ENST00000498213 IGLV10-54A0A075B6I4 117 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 TRBV25-1A0A075B6N4 114 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 RPL37AP8A6NKH3 93 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 COLCA2A8K830 154 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 CCL25O15444 150 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 SNAPINO95295 136 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 OR5AL1P0C617 328 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 CTAG1AP78358 180 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 RHEBQ15382 184 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 ADIRFQ15847 76 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 IQCJQ1A5X6 159 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 Q1RN00 199 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 TMEM241Q24JQ0 296 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms