RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 C4orf48Q5BLP8 95 aa7.98□□□□□ -1.13
CUX1-210ENST00000497815 Q6ZUT4 128 aa7.98□□□□□ -1.13
CUX1-210ENST00000497815 NFE4Q86UQ8 179 aa7.98□□□□□ -1.13
CUX1-210ENST00000497815 BAGE3Q86Y29 109 aa7.98□□□□□ -1.13
CUX1-210ENST00000497815 OPRPNQ99935 248 aaPredicted RBP7.98□□□□□ -1.13
CUX1-210ENST00000497815 AP5S1Q9NUS5 200 aa7.98□□□□□ -1.13
CUX1-210ENST00000497815 IGLV10-54A0A075B6I4 117 aa7.97□□□□□ -1.13
CUX1-210ENST00000497815 IGKV2D-24A0A075B6R9 120 aa7.97□□□□□ -1.13
CUX1-210ENST00000497815 LINC01546A6NGU7 62 aa7.97□□□□□ -1.13
CUX1-210ENST00000497815 Q0VG73 95 aa7.97□□□□□ -1.13
CUX1-210ENST00000497815 PMCHL1Q16048 86 aa7.97□□□□□ -1.13
CUX1-210ENST00000497815 ZNF664Q8N3J9 261 aa7.97□□□□□ -1.13
CUX1-210ENST00000497815 TIMM21Q9BVV7 248 aa7.97□□□□□ -1.13
CUX1-210ENST00000497815 CDC42SE2Q9NRR3 84 aa7.97□□□□□ -1.13
CUX1-210ENST00000497815 SPANXA1Q9NS26 97 aa7.97□□□□□ -1.13
CUX1-210ENST00000497815 PRR34Q9NV39 138 aa7.97□□□□□ -1.13
CUX1-210ENST00000497815 LOC100996750A0A140TA64 210 aa7.96□□□□□ -1.14
CUX1-210ENST00000497815 PSCAO43653 123 aa7.96□□□□□ -1.14
CUX1-210ENST00000497815 G0S2P27469 103 aa7.96□□□□□ -1.14
CUX1-210ENST00000497815 MIAQ16674 131 aa7.96□□□□□ -1.14
CUX1-210ENST00000497815 C1orf43Q9BWL3 253 aa7.96□□□□□ -1.14
CUX1-210ENST00000497815 KRTAP4-6Q9BYQ5 205 aa7.96□□□□□ -1.14
CUX1-210ENST00000497815 KMT2AQ03164 3969 aa7.96□□□□□ -1.14
CUX1-210ENST00000497815 Q6ZRN7 208 aaPredicted RBP7.95□□□□□ -1.14
CUX1-210ENST00000497815 TOMM6Q96B49 74 aa7.95□□□□□ -1.14
CUX1-210ENST00000497815 RMI2Q96E14 147 aa7.95□□□□□ -1.14
CUX1-210ENST00000497815 CSDC2Q9Y534 153 aaKnown RBP7.95□□□□□ -1.14
CUX1-210ENST00000497815 IGLV4-3A0A075B6K6 122 aa7.94□□□□□ -1.14
CUX1-210ENST00000497815 HIST1H2BKO60814 126 aa7.94□□□□□ -1.14
CUX1-210ENST00000497815 HIST1H2BJP06899 126 aa7.94□□□□□ -1.14
CUX1-210ENST00000497815 HIST1H2BOP23527 126 aa7.94□□□□□ -1.14
CUX1-210ENST00000497815 HIST1H2BBP33778 126 aa7.94□□□□□ -1.14
CUX1-210ENST00000497815 HIST1H2BDP58876 126 aa7.94□□□□□ -1.14
CUX1-210ENST00000497815 HIST1H2BCP62807 126 aa7.94□□□□□ -1.14
CUX1-210ENST00000497815 HIST2H2BEQ16778 126 aa7.94□□□□□ -1.14
CUX1-210ENST00000497815 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.94□□□□□ -1.14
CUX1-210ENST00000497815 HIST1H2BHQ93079 126 aa7.94□□□□□ -1.14
CUX1-210ENST00000497815 FAM104AQ969W3 186 aa7.94□□□□□ -1.14
CUX1-210ENST00000497815 CHCHD1Q96BP2 118 aaKnown RBP7.94□□□□□ -1.14
CUX1-210ENST00000497815 SCGB3A1Q96QR1 104 aa7.94□□□□□ -1.14
CUX1-210ENST00000497815 HIST1H2BNQ99877 126 aa7.94□□□□□ -1.14
CUX1-210ENST00000497815 HIST1H2BMQ99879 126 aa7.94□□□□□ -1.14
CUX1-210ENST00000497815 TM2D2Q9BX73 214 aa7.94□□□□□ -1.14
CUX1-210ENST00000497815 PYGO1Q9Y3Y4 419 aa7.94□□□□□ -1.14
CUX1-210ENST00000497815 A0A096LNJ9 63 aa7.93□□□□□ -1.14
CUX1-210ENST00000497815 TRAV13-1A0A0B4J241 112 aa7.93□□□□□ -1.14
CUX1-210ENST00000497815 LINC00959A0A1B0GUT2 108 aa7.93□□□□□ -1.14
CUX1-210ENST00000497815 PRSS29PA6NIE9 313 aa7.93□□□□□ -1.14
CUX1-210ENST00000497815 IGIPA6NJ69 53 aa7.93□□□□□ -1.14
CUX1-210ENST00000497815 C1orf196B1AJZ1 125 aa7.93□□□□□ -1.14
CUX1-210ENST00000497815 HSBP1O75506 76 aa7.93□□□□□ -1.14
CUX1-210ENST00000497815 SERF1AO75920 110 aa7.93□□□□□ -1.14
CUX1-210ENST00000497815 HBDP02042 147 aa7.93□□□□□ -1.14
CUX1-210ENST00000497815 MRPS36P82909 103 aaKnown RBP7.93□□□□□ -1.14
CUX1-210ENST00000497815 TNP2Q05952 138 aa7.93□□□□□ -1.14
CUX1-210ENST00000497815 ZC2HC1BQ5TFG8 222 aa7.93□□□□□ -1.14
CUX1-210ENST00000497815 TRAV8-4A0A0B4J246 113 aa7.92□□□□□ -1.14
CUX1-210ENST00000497815 IFITM10A6NMD0 228 aa7.92□□□□□ -1.14
CUX1-210ENST00000497815 LINC00310P59036 64 aa7.92□□□□□ -1.14
CUX1-210ENST00000497815 SS18Q15532 418 aa7.92□□□□□ -1.14
CUX1-210ENST00000497815 Q6ZN92 141 aa7.92□□□□□ -1.14
CUX1-210ENST00000497815 ERASQ7Z444 233 aa7.92□□□□□ -1.14
CUX1-210ENST00000497815 FAM19A2Q8N3H0 131 aa7.92□□□□□ -1.14
CUX1-210ENST00000497815 CHCHD10Q8WYQ3 142 aaPredicted RBP7.92□□□□□ -1.14
CUX1-210ENST00000497815 TMEM141Q96I45 108 aa7.92□□□□□ -1.14
CUX1-210ENST00000497815 COX11Q9Y6N1 276 aa7.92□□□□□ -1.14
CUX1-210ENST00000497815 DNAH6Q9C0G6 4158 aa7.92□□□□□ -1.14
CUX1-210ENST00000497815 GAGE12HA6NDE8 117 aa7.91□□□□□ -1.14
CUX1-210ENST00000497815 LECT2O14960 151 aa7.91□□□□□ -1.14
CUX1-210ENST00000497815 CCL25O15444 150 aa7.91□□□□□ -1.14
CUX1-210ENST00000497815 NUPR1O60356 82 aa7.91□□□□□ -1.14
CUX1-210ENST00000497815 XCL1P47992 114 aa7.91□□□□□ -1.14
CUX1-210ENST00000497815 TEX43Q6ZNM6 134 aa7.91□□□□□ -1.14
CUX1-210ENST00000497815 LINC00336Q6ZUF6 198 aa7.91□□□□□ -1.14
CUX1-210ENST00000497815 MAPKAPK5-AS1Q8N8E1 139 aa7.91□□□□□ -1.14
CUX1-210ENST00000497815 TIMM17AQ99595 171 aa7.91□□□□□ -1.14
CUX1-210ENST00000497815 VCX2Q9H322 139 aa7.91□□□□□ -1.14
CUX1-210ENST00000497815 LINC01549A6NIU2 74 aa7.9□□□□□ -1.14
CUX1-210ENST00000497815 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.9□□□□□ -1.14
CUX1-210ENST00000497815 BAALCQ8WXS3 180 aa7.9□□□□□ -1.14
CUX1-210ENST00000497815 NPSP0C0P6 89 aa7.89□□□□□ -1.15
CUX1-210ENST00000497815 NDUFA6P56556 154 aa7.89□□□□□ -1.15
CUX1-210ENST00000497815 PDZD11Q5EBL8 140 aa7.89□□□□□ -1.15
CUX1-210ENST00000497815 PAPPA-AS1Q5QFB9 102 aa7.89□□□□□ -1.15
CUX1-210ENST00000497815 KRTAP26-1Q6PEX3 210 aa7.89□□□□□ -1.15
CUX1-210ENST00000497815 LINC00173Q6ZV60 143 aa7.89□□□□□ -1.15
CUX1-210ENST00000497815 C2orf88Q9BSF0 95 aa7.89□□□□□ -1.15
CUX1-210ENST00000497815 DNAH2Q9P225 4427 aa7.88□□□□□ -1.15
CUX1-210ENST00000497815 A0A087WTM6 91 aa7.88□□□□□ -1.15
CUX1-210ENST00000497815 WFDC2Q14508 124 aa7.88□□□□□ -1.15
CUX1-210ENST00000497815 AMELXQ99217 191 aa7.88□□□□□ -1.15
CUX1-210ENST00000497815 LRCOL1A6NCL2 159 aa7.87□□□□□ -1.15
CUX1-210ENST00000497815 ATP5LO75964 103 aa7.87□□□□□ -1.15
CUX1-210ENST00000497815 FOXI1Q12951 378 aa7.87□□□□□ -1.15
CUX1-210ENST00000497815 USP17L23D6RBM5 183 aa7.86□□□□□ -1.15
CUX1-210ENST00000497815 EREGO14944 169 aa7.86□□□□□ -1.15
CUX1-210ENST00000497815 FABP4P15090 132 aa7.86□□□□□ -1.15
CUX1-210ENST00000497815 UBE2D1P51668 147 aa7.86□□□□□ -1.15
CUX1-210ENST00000497815 PMVKQ15126 192 aa7.86□□□□□ -1.15
CUX1-210ENST00000497815 CD164L2Q6UWJ8 174 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms