RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 BAGE2Q86Y30 109 aa0.06□□□□□ -2.4
SMC4-225ENST00000497203 SSPOA2VEC9 5147 aa0.06□□□□□ -2.4
SMC4-225ENST00000497203 SBF2Q86WG5 1849 aa0.06□□□□□ -2.4
SMC4-225ENST00000497203 ROCK2O75116 1388 aaKnown RBP0.06□□□□□ -2.4
SMC4-225ENST00000497203 ABCA2Q9BZC7 2435 aa0.05□□□□□ -2.4
SMC4-225ENST00000497203 LOC285095A0A1B0GVY8 99 aa0.05□□□□□ -2.4
SMC4-225ENST00000497203 C10orf142B7Z368 130 aa0.05□□□□□ -2.4
SMC4-225ENST00000497203 F8VRH5 84 aa0.05□□□□□ -2.4
SMC4-225ENST00000497203 MYOZ3Q8TDC0 251 aa0.05□□□□□ -2.4
SMC4-225ENST00000497203 AKAP6Q13023 2319 aa0.05□□□□□ -2.4
SMC4-225ENST00000497203 PTPRQQ9UMZ3 2332 aa0.05□□□□□ -2.4
SMC4-225ENST00000497203 ZNF236Q9UL36 1845 aa0.05□□□□□ -2.4
SMC4-225ENST00000497203 TCHHQ07283 1943 aa0.05□□□□□ -2.4
SMC4-225ENST00000497203 PKDREJQ9NTG1 2253 aa0.04□□□□□ -2.4
SMC4-225ENST00000497203 NALCNQ8IZF0 1738 aa0.04□□□□□ -2.4
SMC4-225ENST00000497203 A2ML1A8K2U0 1454 aa0.04□□□□□ -2.4
SMC4-225ENST00000497203 ERCC6L2Q5T890 1561 aa0.04□□□□□ -2.4
SMC4-225ENST00000497203 WFDC2Q14508 124 aa0.04□□□□□ -2.4
SMC4-225ENST00000497203 MRPL54Q6P161 138 aaKnown RBP0.04□□□□□ -2.4
SMC4-225ENST00000497203 Q8IZM0 81 aa0.04□□□□□ -2.4
SMC4-225ENST00000497203 LRP6O75581 1613 aa0.04□□□□□ -2.4
SMC4-225ENST00000497203 KIF21AQ7Z4S6 1674 aa0.04□□□□□ -2.4
SMC4-225ENST00000497203 PSME4Q14997 1843 aa0.03□□□□□ -2.4
SMC4-225ENST00000497203 NCOR1O75376 2440 aa0.03□□□□□ -2.4
SMC4-225ENST00000497203 QRICH2Q9H0J4 1663 aa0.03□□□□□ -2.4
SMC4-225ENST00000497203 TNFP01375 233 aa0.03□□□□□ -2.4
SMC4-225ENST00000497203 IGLC7A0M8Q6 106 aa0.02□□□□□ -2.41
SMC4-225ENST00000497203 BCE1O60756 84 aa0.02□□□□□ -2.41
SMC4-225ENST00000497203 TSLPQ969D9 159 aa0.02□□□□□ -2.41
SMC4-225ENST00000497203 RIMS1Q86UR5 1692 aaKnown RBP0.02□□□□□ -2.41
SMC4-225ENST00000497203 C9orf153Q5TBE3 101 aa0.01□□□□□ -2.41
SMC4-225ENST00000497203 LINC01558Q9Y6Z2 57 aa0.01□□□□□ -2.41
SMC4-225ENST00000497203 MYO7BQ6PIF6 2116 aa0.01□□□□□ -2.41
SMC4-225ENST00000497203 OOSP1A8MZH6 123 aa0□□□□□ -2.41
SMC4-225ENST00000497203 HMGN4O00479 90 aa0□□□□□ -2.41
SMC4-225ENST00000497203 DLEU1O43261 78 aa0□□□□□ -2.41
SMC4-225ENST00000497203 SNAPC5O75971 98 aa0□□□□□ -2.41
SMC4-225ENST00000497203 Q5VSD8 79 aa0□□□□□ -2.41
SMC4-225ENST00000497203 Q6JHZ5 121 aa0□□□□□ -2.41
SMC4-225ENST00000497203 TP53AIP1Q9HCN2 124 aa0□□□□□ -2.41
SMC4-225ENST00000497203 DSTQ03001 7570 aaKnown RBP-0.01□□□□□ -2.41
SMC4-225ENST00000497203 FLNCQ14315 2725 aa-0.01□□□□□ -2.41
SMC4-225ENST00000497203 UBE2L5PA0A1B0GUS4 154 aa-0.01□□□□□ -2.41
SMC4-225ENST00000497203 ATP5EP56381 51 aaPredicted RBP-0.01□□□□□ -2.41
SMC4-225ENST00000497203 UBE2L3P68036 154 aaKnown RBP-0.01□□□□□ -2.41
SMC4-225ENST00000497203 DCDP81605 110 aaKnown RBP-0.01□□□□□ -2.41
SMC4-225ENST00000497203 DEFB109BQ30KR1 87 aa-0.01□□□□□ -2.41
SMC4-225ENST00000497203 LINC00472Q9H8W2 130 aa-0.01□□□□□ -2.41
SMC4-225ENST00000497203 PTPN13Q12923 2485 aa-0.01□□□□□ -2.41
SMC4-225ENST00000497203 CUL7Q14999 1698 aa-0.02□□□□□ -2.41
SMC4-225ENST00000497203 ROBO1Q9Y6N7 1651 aa-0.02□□□□□ -2.41
SMC4-225ENST00000497203 LAMC1P11047 1609 aa-0.02□□□□□ -2.41
SMC4-225ENST00000497203 USF3Q68DE3 2245 aa-0.02□□□□□ -2.41
SMC4-225ENST00000497203 MYOM2P54296 1465 aa-0.02□□□□□ -2.41
SMC4-225ENST00000497203 SHANK2Q9UPX8 1470 aa-0.02□□□□□ -2.41
SMC4-225ENST00000497203 MUC12Q9UKN1 5478 aa-0.02□□□□□ -2.41
SMC4-225ENST00000497203 FAM24AA6NFZ4 105 aa-0.02□□□□□ -2.41
SMC4-225ENST00000497203 UQCR10Q9UDW1 63 aa-0.02□□□□□ -2.41
SMC4-225ENST00000497203 FXYD6-FXYD2A0A087WZ82 144 aa-0.03□□□□□ -2.41
SMC4-225ENST00000497203 A0A1B0GV90 55 aa-0.03□□□□□ -2.41
SMC4-225ENST00000497203 SFT2D2O95562 160 aa-0.03□□□□□ -2.41
SMC4-225ENST00000497203 LINC00474Q9P2X8 69 aa-0.03□□□□□ -2.41
SMC4-225ENST00000497203 IER3IP1Q9Y5U9 82 aa-0.03□□□□□ -2.41
SMC4-225ENST00000497203 MYOM1P52179 1685 aa-0.03□□□□□ -2.41
SMC4-225ENST00000497203 SHROOM2Q13796 1616 aa-0.03□□□□□ -2.41
SMC4-225ENST00000497203 RAPGEF6Q8TEU7 1601 aa-0.03□□□□□ -2.41
SMC4-225ENST00000497203 SMG6Q86US8 1419 aaKnown RBP-0.04□□□□□ -2.42
SMC4-225ENST00000497203 PPRC1Q5VV67 1664 aaKnown RBP-0.04□□□□□ -2.42
SMC4-225ENST00000497203 NSD1Q96L73 2696 aaPredicted RBP-0.04□□□□□ -2.42
SMC4-225ENST00000497203 GNG4P50150 75 aa-0.04□□□□□ -2.42
SMC4-225ENST00000497203 PIGYQ3MUY2 71 aa-0.04□□□□□ -2.42
SMC4-225ENST00000497203 EIF4G3O43432 1585 aaKnown RBP-0.04□□□□□ -2.42
SMC4-225ENST00000497203 SPTBN1Q01082 2364 aaKnown RBP-0.05□□□□□ -2.42
SMC4-225ENST00000497203 CHKB-CPT1BH3BT56 60 aa-0.05□□□□□ -2.42
SMC4-225ENST00000497203 I3L2K1 104 aa-0.05□□□□□ -2.42
SMC4-225ENST00000497203 MGPP08493 103 aa-0.05□□□□□ -2.42
SMC4-225ENST00000497203 FAIMQ9NVQ4 179 aa-0.05□□□□□ -2.42
SMC4-225ENST00000497203 CACNA1AO00555 2505 aa-0.05□□□□□ -2.42
SMC4-225ENST00000497203 GOLGA4Q13439 2230 aaKnown RBP-0.05□□□□□ -2.42
SMC4-225ENST00000497203 TRBV6-1A0A0K0K1D8 114 aa-0.06□□□□□ -2.42
SMC4-225ENST00000497203 WHAMMP3Q1A5X7 153 aa-0.06□□□□□ -2.42
SMC4-225ENST00000497203 DPH3P1Q9H4G8 78 aa-0.06□□□□□ -2.42
SMC4-225ENST00000497203 NXT2Q9NPJ8 142 aaKnown RBP-0.06□□□□□ -2.42
SMC4-225ENST00000497203 NEBP20929 6669 aa-0.06□□□□□ -2.42
SMC4-225ENST00000497203 C10orf71Q711Q0 1435 aa-0.06□□□□□ -2.42
SMC4-225ENST00000497203 PCLOQ9Y6V0 5065 aa-0.06□□□□□ -2.42
SMC4-225ENST00000497203 MUC2Q02817 5179 aa-0.07□□□□□ -2.42
SMC4-225ENST00000497203 LOC730098B7Z3J9 87 aa-0.07□□□□□ -2.42
SMC4-225ENST00000497203 F6UZH7 168 aa-0.07□□□□□ -2.42
SMC4-225ENST00000497203 CORTO00230 105 aa-0.07□□□□□ -2.42
SMC4-225ENST00000497203 PPP3R1P63098 170 aa-0.07□□□□□ -2.42
SMC4-225ENST00000497203 SVBPQ8N300 66 aa-0.07□□□□□ -2.42
SMC4-225ENST00000497203 TMEM203Q969S6 136 aa-0.07□□□□□ -2.42
SMC4-225ENST00000497203 CDC42SE2Q9NRR3 84 aa-0.07□□□□□ -2.42
SMC4-225ENST00000497203 STAB1Q9NY15 2570 aa-0.07□□□□□ -2.42
SMC4-225ENST00000497203 KMT2CQ8NEZ4 4911 aaKnown RBP-0.08□□□□□ -2.42
SMC4-225ENST00000497203 PAPPAQ13219 1627 aa-0.08□□□□□ -2.42
SMC4-225ENST00000497203 RYR3Q15413 4870 aa-0.08□□□□□ -2.42
SMC4-225ENST00000497203 SPRR1AP35321 89 aa-0.08□□□□□ -2.42
SMC4-225ENST00000497203 GNG11P61952 73 aa-0.08□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms