RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 RS1O15537 224 aa6.97□□□□□ -1.29
SYNE1-230ENST00000495090 PRIMA1Q86XR5 153 aa6.97□□□□□ -1.29
SYNE1-230ENST00000495090 FAM218AQ96MZ4 157 aa6.97□□□□□ -1.29
SYNE1-230ENST00000495090 Q9UF83 564 aa6.97□□□□□ -1.29
SYNE1-230ENST00000495090 OBSCN-AS1Q96MR7 158 aa6.96□□□□□ -1.3
SYNE1-230ENST00000495090 NACAE9PAV3 2078 aa6.96□□□□□ -1.3
SYNE1-230ENST00000495090 KNCNA6PVL3 124 aa6.95□□□□□ -1.3
SYNE1-230ENST00000495090 F5H768 121 aa6.95□□□□□ -1.3
SYNE1-230ENST00000495090 RPL18AQ02543 176 aaKnown RBP6.95□□□□□ -1.3
SYNE1-230ENST00000495090 Q6JHZ5 121 aa6.95□□□□□ -1.3
SYNE1-230ENST00000495090 GAGE2AQ6NT46 116 aa6.95□□□□□ -1.3
SYNE1-230ENST00000495090 C11orf72Q8NBR9 251 aa6.95□□□□□ -1.3
SYNE1-230ENST00000495090 IGHV4-61A0A0C4DH41 118 aa6.95□□□□□ -1.3
SYNE1-230ENST00000495090 SYNJ2BPP57105 145 aa6.95□□□□□ -1.3
SYNE1-230ENST00000495090 DOPEY2Q9Y3R5 2298 aa6.95□□□□□ -1.3
SYNE1-230ENST00000495090 IGHV3-38A0A0C4DH36 116 aa6.94□□□□□ -1.3
SYNE1-230ENST00000495090 DNAL4O96015 105 aa6.94□□□□□ -1.3
SYNE1-230ENST00000495090 CRPP02741 224 aa6.94□□□□□ -1.3
SYNE1-230ENST00000495090 TLN1Q9Y490 2541 aaKnown RBP6.94□□□□□ -1.3
SYNE1-230ENST00000495090 RBMY1BA6NDE4 496 aaKnown RBP6.93□□□□□ -1.3
SYNE1-230ENST00000495090 RBMY1EA6NEQ0 496 aaKnown RBP6.93□□□□□ -1.3
SYNE1-230ENST00000495090 H0YGX0 51 aa6.93□□□□□ -1.3
SYNE1-230ENST00000495090 RBMY1DP0C7P1 496 aaKnown RBP6.93□□□□□ -1.3
SYNE1-230ENST00000495090 HTN1P15515 57 aa6.93□□□□□ -1.3
SYNE1-230ENST00000495090 TMEM258P61165 79 aa6.93□□□□□ -1.3
SYNE1-230ENST00000495090 ABCA2Q9BZC7 2435 aa6.93□□□□□ -1.3
SYNE1-230ENST00000495090 TRBV10-1A0A0K0K1A3 114 aa6.93□□□□□ -1.3
SYNE1-230ENST00000495090 UCNP55089 124 aa6.93□□□□□ -1.3
SYNE1-230ENST00000495090 DEFB131AP59861 70 aa6.93□□□□□ -1.3
SYNE1-230ENST00000495090 C10orf105Q8TEF2 133 aa6.93□□□□□ -1.3
SYNE1-230ENST00000495090 ZNF292O60281 2723 aa6.93□□□□□ -1.3
SYNE1-230ENST00000495090 A0A0U1RRA0 63 aa6.92□□□□□ -1.3
SYNE1-230ENST00000495090 SMIM9A6NGZ8 99 aa6.92□□□□□ -1.3
SYNE1-230ENST00000495090 MSMBP08118 114 aa6.92□□□□□ -1.3
SYNE1-230ENST00000495090 HOXD3P31249 432 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-230ENST00000495090 FAM19A5Q7Z5A7 132 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-230ENST00000495090 SERP2Q8N6R1 65 aa6.92□□□□□ -1.3
SYNE1-230ENST00000495090 KLK5Q9Y337 293 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-230ENST00000495090 LOC107984640A0A0U1RRK4 108 aa6.91□□□□□ -1.3
SYNE1-230ENST00000495090 OR13C6PQ8NH95 151 aa6.91□□□□□ -1.3
SYNE1-230ENST00000495090 UBE2E2Q96LR5 201 aa6.91□□□□□ -1.3
SYNE1-230ENST00000495090 CDC42SE2Q9NRR3 84 aa6.91□□□□□ -1.3
SYNE1-230ENST00000495090 GVINP1Q7Z2Y8 2422 aa6.91□□□□□ -1.3
SYNE1-230ENST00000495090 SPTBN1Q01082 2364 aaKnown RBP6.91□□□□□ -1.3
SYNE1-230ENST00000495090 NBL1P41271 181 aa6.91□□□□□ -1.3
SYNE1-230ENST00000495090 OXLD1Q5BKU9 147 aa6.91□□□□□ -1.3
SYNE1-230ENST00000495090 Q9HAA7 133 aa6.91□□□□□ -1.3
SYNE1-230ENST00000495090 IGKV2-28A0A075B6P5 120 aa6.9□□□□□ -1.3
SYNE1-230ENST00000495090 TRAV13-1A0A0B4J241 112 aa6.9□□□□□ -1.3
SYNE1-230ENST00000495090 hADV29S1A0JD25 119 aa6.9□□□□□ -1.3
SYNE1-230ENST00000495090 INSP01308 110 aa6.9□□□□□ -1.3
SYNE1-230ENST00000495090 IGKV2D-28P01615 120 aa6.9□□□□□ -1.3
SYNE1-230ENST00000495090 RPL36AP83881 106 aaKnown RBP6.9□□□□□ -1.3
SYNE1-230ENST00000495090 C10orf99Q6UWK7 81 aa6.9□□□□□ -1.3
SYNE1-230ENST00000495090 LINC00337Q8N6G1 96 aa6.9□□□□□ -1.3
SYNE1-230ENST00000495090 IL17DQ8TAD2 202 aa6.9□□□□□ -1.3
SYNE1-230ENST00000495090 RPL36ALQ969Q0 106 aaKnown RBP6.9□□□□□ -1.3
SYNE1-230ENST00000495090 UPK3BQ9BT76 320 aa6.9□□□□□ -1.3
SYNE1-230ENST00000495090 SND1-IT1Q9HBX3 110 aa6.89□□□□□ -1.31
SYNE1-230ENST00000495090 PTPRQQ9UMZ3 2332 aa6.89□□□□□ -1.31
SYNE1-230ENST00000495090 PRM2P04554 102 aa6.89□□□□□ -1.31
SYNE1-230ENST00000495090 SMIM11BQ8TCY0 68 aa6.89□□□□□ -1.31
SYNE1-230ENST00000495090 SVEP1Q4LDE5 3571 aa6.88□□□□□ -1.31
SYNE1-230ENST00000495090 A0A087WYN8 130 aa6.88□□□□□ -1.31
SYNE1-230ENST00000495090 K7EQD1 137 aa6.88□□□□□ -1.31
SYNE1-230ENST00000495090 NTM-AS1Q6ZSK4 140 aa6.88□□□□□ -1.31
SYNE1-230ENST00000495090 MIR7-3HGQ8N6C7 128 aa6.88□□□□□ -1.31
SYNE1-230ENST00000495090 MRAPQ8TCY5 172 aa6.88□□□□□ -1.31
SYNE1-230ENST00000495090 C14orf132Q9NPU4 83 aa6.88□□□□□ -1.31
SYNE1-230ENST00000495090 LINC00846Q9NV44 126 aa6.88□□□□□ -1.31
SYNE1-230ENST00000495090 COL6A6A6NMZ7 2263 aa6.88□□□□□ -1.31
SYNE1-230ENST00000495090 B4DSR2 109 aa6.88□□□□□ -1.31
SYNE1-230ENST00000495090 IGHV4-59P01825 116 aa6.88□□□□□ -1.31
SYNE1-230ENST00000495090 ATP5EP2Q5VTU8 51 aa6.88□□□□□ -1.31
SYNE1-230ENST00000495090 COX7B2Q8TF08 81 aa6.88□□□□□ -1.31
SYNE1-230ENST00000495090 DPH3Q96FX2 82 aa6.88□□□□□ -1.31
SYNE1-230ENST00000495090 Q96MF0 132 aa6.88□□□□□ -1.31
SYNE1-230ENST00000495090 MAP6D1Q9H9H5 199 aa6.88□□□□□ -1.31
SYNE1-230ENST00000495090 PTPRZ1P23471 2315 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-230ENST00000495090 IBA57-AS1B1ANH7 110 aa6.87□□□□□ -1.31
SYNE1-230ENST00000495090 S100A7L2Q5SY68 101 aa6.87□□□□□ -1.31
SYNE1-230ENST00000495090 ASH1LQ9NR48 2969 aaKnown RBP6.87□□□□□ -1.31
SYNE1-230ENST00000495090 USP17L23D6RBM5 183 aa6.86□□□□□ -1.31
SYNE1-230ENST00000495090 AVPP01185 164 aa6.86□□□□□ -1.31
SYNE1-230ENST00000495090 C9orf129Q5T035 196 aaKnown RBP6.86□□□□□ -1.31
SYNE1-230ENST00000495090 LINC01561Q8N1V8 128 aa6.86□□□□□ -1.31
SYNE1-230ENST00000495090 IGHV4-30-2A0A087WSY4 118 aa6.86□□□□□ -1.31
SYNE1-230ENST00000495090 IGKV3D-7A0A0C4DH55 119 aa6.86□□□□□ -1.31
SYNE1-230ENST00000495090 NDUFC2-KCTD14E9PQ53 114 aa6.86□□□□□ -1.31
SYNE1-230ENST00000495090 LY6G6DO95868 133 aa6.86□□□□□ -1.31
SYNE1-230ENST00000495090 DEFB112Q30KQ8 113 aa6.86□□□□□ -1.31
SYNE1-230ENST00000495090 CCL19Q99731 98 aa6.86□□□□□ -1.31
SYNE1-230ENST00000495090 TMEM243Q9BU79 118 aa6.86□□□□□ -1.31
SYNE1-230ENST00000495090 CYSTM1Q9H1C7 97 aa6.86□□□□□ -1.31
SYNE1-230ENST00000495090 C19orf84I3L1E1 186 aa6.85□□□□□ -1.31
SYNE1-230ENST00000495090 UBE2L6O14933 153 aa6.85□□□□□ -1.31
SYNE1-230ENST00000495090 CCKP06307 115 aa6.85□□□□□ -1.31
SYNE1-230ENST00000495090 CCL18P55774 89 aa6.85□□□□□ -1.31
SYNE1-230ENST00000495090 LINC00167Q96N53 147 aa6.85□□□□□ -1.31
SYNE1-230ENST00000495090 ORMDL1Q9P0S3 153 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms