RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 CDIP1Q9H305 208 aa12.15□□□□□ -0.46
CCDC88B-209ENST00000494080 KRTAP10-9P60411 292 aa12.15□□□□□ -0.47
CCDC88B-209ENST00000494080 PSCAO43653 123 aa12.14□□□□□ -0.47
CCDC88B-209ENST00000494080 CRIP2P52943 208 aaPredicted RBP12.14□□□□□ -0.47
CCDC88B-209ENST00000494080 VSIG2Q96IQ7 327 aa12.14□□□□□ -0.47
CCDC88B-209ENST00000494080 ANGP03950 147 aaKnown RBP12.14□□□□□ -0.47
CCDC88B-209ENST00000494080 CRLF1O75462 422 aa12.14□□□□□ -0.47
CCDC88B-209ENST00000494080 PRR9Q5T870 116 aa12.13□□□□□ -0.47
CCDC88B-209ENST00000494080 RNF152Q8N8N0 203 aa12.13□□□□□ -0.47
CCDC88B-209ENST00000494080 DAZ2Q13117 558 aaKnown RBP12.13□□□□□ -0.47
CCDC88B-209ENST00000494080 DAZ4Q86SG3 579 aaKnown RBP12.13□□□□□ -0.47
CCDC88B-209ENST00000494080 DAZ3Q9NR90 486 aaKnown RBP12.13□□□□□ -0.47
CCDC88B-209ENST00000494080 CLPSL1A2RUU4 121 aa12.13□□□□□ -0.47
CCDC88B-209ENST00000494080 PSMB8P28062 276 aa12.13□□□□□ -0.47
CCDC88B-209ENST00000494080 LRRC75A-AS1Q8N1F1 130 aa12.13□□□□□ -0.47
CCDC88B-209ENST00000494080 UBE2D3P61077 147 aa12.13□□□□□ -0.47
CCDC88B-209ENST00000494080 UBE2D2P62837 147 aa12.13□□□□□ -0.47
CCDC88B-209ENST00000494080 Q6ZSV7 163 aa12.13□□□□□ -0.47
CCDC88B-209ENST00000494080 DEFB4AO15263 64 aa12.12□□□□□ -0.47
CCDC88B-209ENST00000494080 ORMDL1Q9P0S3 153 aa12.12□□□□□ -0.47
CCDC88B-209ENST00000494080 IGLV4-3A0A075B6K6 122 aa12.12□□□□□ -0.47
CCDC88B-209ENST00000494080 XCL1P47992 114 aa12.12□□□□□ -0.47
CCDC88B-209ENST00000494080 LECT2O14960 151 aa12.11□□□□□ -0.47
CCDC88B-209ENST00000494080 C5orf38Q86SI9 138 aa12.11□□□□□ -0.47
CCDC88B-209ENST00000494080 FAM110AQ9BQ89 295 aa12.11□□□□□ -0.47
CCDC88B-209ENST00000494080 RBM3P98179 157 aaKnown RBP12.11□□□□□ -0.47
CCDC88B-209ENST00000494080 C18orf65Q6ZTR6 163 aa12.11□□□□□ -0.47
CCDC88B-209ENST00000494080 COX7A2LO14548 114 aa12.1□□□□□ -0.47
CCDC88B-209ENST00000494080 C3orf22Q8N5N4 141 aa12.1□□□□□ -0.47
CCDC88B-209ENST00000494080 C14orf132Q9NPU4 83 aa12.1□□□□□ -0.47
CCDC88B-209ENST00000494080 A8MZ25 164 aa12.1□□□□□ -0.47
CCDC88B-209ENST00000494080 F8W735 103 aaPredicted RBP12.1□□□□□ -0.47
CCDC88B-209ENST00000494080 F8P00451 2351 aa12.1□□□□□ -0.47
CCDC88B-209ENST00000494080 TRAV25A0A0B4J276 109 aa12.1□□□□□ -0.47
CCDC88B-209ENST00000494080 H0YGX0 51 aa12.1□□□□□ -0.47
CCDC88B-209ENST00000494080 DEFB114Q30KQ6 69 aa12.1□□□□□ -0.47
CCDC88B-209ENST00000494080 CDKN2A-AS1Q9UH64 79 aa12.1□□□□□ -0.47
CCDC88B-209ENST00000494080 ZNF561-AS1K7EIQ3 104 aa12.1□□□□□ -0.47
CCDC88B-209ENST00000494080 K7EQD1 137 aa12.1□□□□□ -0.47
CCDC88B-209ENST00000494080 ATP5G1P05496 136 aa12.1□□□□□ -0.47
CCDC88B-209ENST00000494080 GYPEP15421 78 aa12.1□□□□□ -0.47
CCDC88B-209ENST00000494080 SDIM1Q6ZPB5 146 aa12.1□□□□□ -0.47
CCDC88B-209ENST00000494080 C16orf74Q96GX8 76 aa12.1□□□□□ -0.47
CCDC88B-209ENST00000494080 hADV29S1A0JD25 119 aa12.09□□□□□ -0.47
CCDC88B-209ENST00000494080 MRGPRG-AS1Q2M3A8 158 aa12.09□□□□□ -0.47
CCDC88B-209ENST00000494080 LINC00694P0DN24 101 aa12.09□□□□□ -0.47
CCDC88B-209ENST00000494080 EDN2P20800 178 aa12.09□□□□□ -0.47
CCDC88B-209ENST00000494080 TMEM263Q8WUH6 116 aaKnown RBP12.09□□□□□ -0.47
CCDC88B-209ENST00000494080 C9orf66Q5T8R8 295 aa12.08□□□□□ -0.48
CCDC88B-209ENST00000494080 NDUFA7O95182 113 aa12.08□□□□□ -0.48
CCDC88B-209ENST00000494080 RNASE3P12724 160 aaKnown RBP12.08□□□□□ -0.48
CCDC88B-209ENST00000494080 DEFB135Q30KP9 77 aa12.08□□□□□ -0.48
CCDC88B-209ENST00000494080 ZNF702PQ9H963 129 aa12.08□□□□□ -0.48
CCDC88B-209ENST00000494080 IGHV4-4A0A075B6R2 117 aa12.08□□□□□ -0.48
CCDC88B-209ENST00000494080 MRAPQ8TCY5 172 aa12.08□□□□□ -0.48
CCDC88B-209ENST00000494080 TRBV27A0A0K0K1C4 114 aa12.07□□□□□ -0.48
CCDC88B-209ENST00000494080 LAMA1P25391 3075 aa12.07□□□□□ -0.48
CCDC88B-209ENST00000494080 IGLV2-18A0A075B6J9 118 aa12.07□□□□□ -0.48
CCDC88B-209ENST00000494080 IGLV1-40P01703 118 aa12.07□□□□□ -0.48
CCDC88B-209ENST00000494080 POLR2KP53803 58 aaKnown RBP12.07□□□□□ -0.48
CCDC88B-209ENST00000494080 H7C423 109 aa12.06□□□□□ -0.48
CCDC88B-209ENST00000494080 M0QY20 66 aa12.06□□□□□ -0.48
CCDC88B-209ENST00000494080 PRM2P04554 102 aa12.06□□□□□ -0.48
CCDC88B-209ENST00000494080 MIR7-3HGQ8N6C7 128 aa12.06□□□□□ -0.48
CCDC88B-209ENST00000494080 Q6ZTI0 123 aa12.06□□□□□ -0.48
CCDC88B-209ENST00000494080 IGLV10-54A0A075B6I4 117 aa12.06□□□□□ -0.48
CCDC88B-209ENST00000494080 TSPEAR-AS2P59090 65 aa12.06□□□□□ -0.48
CCDC88B-209ENST00000494080 LST1O00453 97 aa12.05□□□□□ -0.48
CCDC88B-209ENST00000494080 Q6Q795 121 aa12.05□□□□□ -0.48
CCDC88B-209ENST00000494080 IGIPA6NJ69 53 aa12.05□□□□□ -0.48
CCDC88B-209ENST00000494080 VCANP13611 3396 aa12.05□□□□□ -0.48
CCDC88B-209ENST00000494080 DSCR8Q96T75 97 aa12.04□□□□□ -0.48
CCDC88B-209ENST00000494080 SMCPP49901 116 aaPredicted RBP12.04□□□□□ -0.48
CCDC88B-209ENST00000494080 PSMG3-AS1Q96PY0 264 aa12.04□□□□□ -0.48
CCDC88B-209ENST00000494080 PPDPFQ9H3Y8 114 aa12.04□□□□□ -0.48
CCDC88B-209ENST00000494080 PRO0461Q9UI25 63 aa12.04□□□□□ -0.48
CCDC88B-209ENST00000494080 ZNF292O60281 2723 aa12.04□□□□□ -0.48
CCDC88B-209ENST00000494080 LINC00308Q8TCZ7 52 aa12.03□□□□□ -0.48
CCDC88B-209ENST00000494080 PROK1P58294 105 aa12.03□□□□□ -0.48
CCDC88B-209ENST00000494080 ODF3Q96PU9 254 aa12.03□□□□□ -0.48
CCDC88B-209ENST00000494080 PTPRBP23467 1997 aa12.02□□□□□ -0.48
CCDC88B-209ENST00000494080 INAFM1C9JVW0 142 aa12.02□□□□□ -0.48
CCDC88B-209ENST00000494080 COX8CQ7Z4L0 72 aa12.02□□□□□ -0.48
CCDC88B-209ENST00000494080 IGLV4-69A0A075B6H9 119 aa12.02□□□□□ -0.49
CCDC88B-209ENST00000494080 COX7B2Q8TF08 81 aa12.02□□□□□ -0.49
CCDC88B-209ENST00000494080 DCANP1Q8TF63 244 aa12.02□□□□□ -0.49
CCDC88B-209ENST00000494080 TRAV23DV6A0A075B6W5 121 aa12.01□□□□□ -0.49
CCDC88B-209ENST00000494080 IMUPQ9GZP8 106 aa12.01□□□□□ -0.49
CCDC88B-209ENST00000494080 LINC00467Q9BRT7 94 aa12.01□□□□□ -0.49
CCDC88B-209ENST00000494080 TRBV6-5A0A0K0K1A5 114 aa12□□□□□ -0.49
CCDC88B-209ENST00000494080 PIK3CD-AS1Q5SR53 167 aa12□□□□□ -0.49
CCDC88B-209ENST00000494080 DNAH14Q0VDD8 3507 aa12□□□□□ -0.49
CCDC88B-209ENST00000494080 C20orf197Q8N268 126 aa12□□□□□ -0.49
CCDC88B-209ENST00000494080 HECTD1Q9ULT8 2610 aa12□□□□□ -0.49
CCDC88B-209ENST00000494080 SMIM9A6NGZ8 99 aa11.99□□□□□ -0.49
CCDC88B-209ENST00000494080 TSHBP01222 138 aa11.99□□□□□ -0.49
CCDC88B-209ENST00000494080 LINC01006Q8NI28 216 aa11.99□□□□□ -0.49
CCDC88B-209ENST00000494080 BBC3Q96PG8 261 aaPredicted RBP11.99□□□□□ -0.49
CCDC88B-209ENST00000494080 SPART-AS1P0CW21 52 aa11.99□□□□□ -0.49
CCDC88B-209ENST00000494080 LOC107984640A0A0U1RRK4 108 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms