RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 AMN1Q8IY45 258 aa4.5□□□□□ -1.69
VPS52-219ENST00000493379 NRACQ8N912 160 aa4.5□□□□□ -1.69
VPS52-219ENST00000493379 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.5□□□□□ -1.69
VPS52-219ENST00000493379 BTF3L4Q96K17 158 aa4.5□□□□□ -1.69
VPS52-219ENST00000493379 KRTAP9-3Q9BYQ3 159 aa4.5□□□□□ -1.69
VPS52-219ENST00000493379 PRR34Q9NV39 138 aa4.5□□□□□ -1.69
VPS52-219ENST00000493379 PAM16Q9Y3D7 125 aa4.5□□□□□ -1.69
VPS52-219ENST00000493379 TRAV26-2A0A0B4J265 109 aa4.49□□□□□ -1.69
VPS52-219ENST00000493379 C7orf77A4D0Y5 90 aa4.49□□□□□ -1.69
VPS52-219ENST00000493379 SDHAF1A6NFY7 115 aa4.49□□□□□ -1.69
VPS52-219ENST00000493379 H7C423 109 aa4.49□□□□□ -1.69
VPS52-219ENST00000493379 ESDP10768 282 aa4.49□□□□□ -1.69
VPS52-219ENST00000493379 RPS10P46783 165 aaKnown RBP4.49□□□□□ -1.69
VPS52-219ENST00000493379 RHEBQ15382 184 aa4.49□□□□□ -1.69
VPS52-219ENST00000493379 MRPL51Q4U2R6 128 aaKnown RBP4.49□□□□□ -1.69
VPS52-219ENST00000493379 NTN5Q8WTR8 489 aaPredicted RBP4.49□□□□□ -1.69
VPS52-219ENST00000493379 RPL39LQ96EH5 51 aaKnown RBP4.49□□□□□ -1.69
VPS52-219ENST00000493379 C20orf78Q9BR46 151 aa4.49□□□□□ -1.69
VPS52-219ENST00000493379 TMEM70Q9BUB7 260 aa4.49□□□□□ -1.69
VPS52-219ENST00000493379 TRBV25-1A0A075B6N4 114 aa4.48□□□□□ -1.69
VPS52-219ENST00000493379 IGHV1-24A0A0C4DH33 117 aa4.48□□□□□ -1.69
VPS52-219ENST00000493379 I3L3M4 83 aa4.48□□□□□ -1.69
VPS52-219ENST00000493379 ELOBQ15370 118 aa4.48□□□□□ -1.69
VPS52-219ENST00000493379 KCNIP4Q6PIL6 250 aa4.48□□□□□ -1.69
VPS52-219ENST00000493379 ST20Q9HBF5 79 aa4.48□□□□□ -1.69
VPS52-219ENST00000493379 LAMTOR2Q9Y2Q5 125 aa4.48□□□□□ -1.69
VPS52-219ENST00000493379 CSDC2Q9Y534 153 aaKnown RBP4.48□□□□□ -1.69
VPS52-219ENST00000493379 TRAV8-3A0A0A6YYJ7 113 aa4.47□□□□□ -1.69
VPS52-219ENST00000493379 LRCOL1A6NCL2 159 aa4.47□□□□□ -1.69
VPS52-219ENST00000493379 TSHBP01222 138 aa4.47□□□□□ -1.69
VPS52-219ENST00000493379 RBX1P62877 108 aa4.47□□□□□ -1.69
VPS52-219ENST00000493379 Q0VG73 95 aa4.47□□□□□ -1.69
VPS52-219ENST00000493379 COTL1Q14019 142 aa4.47□□□□□ -1.69
VPS52-219ENST00000493379 COX19Q49B96 90 aa4.47□□□□□ -1.69
VPS52-219ENST00000493379 MRPL54Q6P161 138 aaKnown RBP4.47□□□□□ -1.69
VPS52-219ENST00000493379 ENHOQ6UWT2 76 aa4.47□□□□□ -1.69
VPS52-219ENST00000493379 TMEM136Q6ZRR5 245 aa4.47□□□□□ -1.69
VPS52-219ENST00000493379 MRPL52Q86TS9 123 aaKnown RBP4.47□□□□□ -1.69
VPS52-219ENST00000493379 SVBPQ8N300 66 aa4.47□□□□□ -1.69
VPS52-219ENST00000493379 C20orf203Q8NBC4 194 aa4.47□□□□□ -1.69
VPS52-219ENST00000493379 TMEM243Q9BU79 118 aa4.47□□□□□ -1.69
VPS52-219ENST00000493379 PKHD1L1Q86WI1 4243 aa4.47□□□□□ -1.69
VPS52-219ENST00000493379 A0A087WX48 190 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 TCAPO15273 167 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 SNAPINO95295 136 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 IGHV3-30P01768 117 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 IGHV3-33P01772 117 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 IGHV3-30-3P0DP02 117 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 IGHV3-30-5P0DP03 117 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 VPREB1P12018 145 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 CKS2P33552 79 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 NDUFA5Q16718 116 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 MPV17L2Q567V2 206 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 Q5VSD8 79 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 KRTAP26-1Q6PEX3 210 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 ORMDL3Q8N138 153 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 YPEL4Q96NS1 127 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 GNB1LQ9BYB4 327 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 FSIP2Q5CZC0 6907 aa4.46□□□□□ -1.7
VPS52-219ENST00000493379 LINC01546A6NGU7 62 aa4.45□□□□□ -1.7
VPS52-219ENST00000493379 D6R8Y8 96 aa4.45□□□□□ -1.7
VPS52-219ENST00000493379 SMKR1H3BMG3 65 aa4.45□□□□□ -1.7
VPS52-219ENST00000493379 K7EMI3 77 aa4.45□□□□□ -1.7
VPS52-219ENST00000493379 NPYP01303 97 aa4.45□□□□□ -1.7
VPS52-219ENST00000493379 ZNF25P17030 456 aaPredicted RBP4.45□□□□□ -1.7
VPS52-219ENST00000493379 PMCHP20382 165 aa4.45□□□□□ -1.7
VPS52-219ENST00000493379 MIAQ16674 131 aa4.45□□□□□ -1.7
VPS52-219ENST00000493379 PAPPA-AS1Q5QFB9 102 aa4.45□□□□□ -1.7
VPS52-219ENST00000493379 CHCHD5Q9BSY4 110 aa4.45□□□□□ -1.7
VPS52-219ENST00000493379 TIMM21Q9BVV7 248 aa4.45□□□□□ -1.7
VPS52-219ENST00000493379 RPS10P5Q9NQ39 176 aa4.45□□□□□ -1.7
VPS52-219ENST00000493379 KLK12Q9UKR0 248 aa4.45□□□□□ -1.7
VPS52-219ENST00000493379 URGCP-MRPS24S4R325 110 aa4.45□□□□□ -1.7
VPS52-219ENST00000493379 LRP1Q07954 4544 aaKnown RBP4.44□□□□□ -1.7
VPS52-219ENST00000493379 IGLV4-60A0A075B6I1 120 aa4.44□□□□□ -1.7
VPS52-219ENST00000493379 A0A087WTM6 91 aa4.44□□□□□ -1.7
VPS52-219ENST00000493379 TRAV8-4A0A0B4J246 113 aa4.44□□□□□ -1.7
VPS52-219ENST00000493379 TMEM262E9PQX1 116 aa4.44□□□□□ -1.7
VPS52-219ENST00000493379 HLA-DQA1P01909 254 aa4.44□□□□□ -1.7
VPS52-219ENST00000493379 APOC3P02656 99 aa4.44□□□□□ -1.7
VPS52-219ENST00000493379 S100PP25815 95 aa4.44□□□□□ -1.7
VPS52-219ENST00000493379 AMTP48728 403 aa4.44□□□□□ -1.7
VPS52-219ENST00000493379 SEC61BP60468 96 aaKnown RBP4.44□□□□□ -1.7
VPS52-219ENST00000493379 SLC7A5P1Q8MH63 180 aa4.44□□□□□ -1.7
VPS52-219ENST00000493379 Q8N976 141 aa4.44□□□□□ -1.7
VPS52-219ENST00000493379 FAM104AQ969W3 186 aa4.44□□□□□ -1.7
VPS52-219ENST00000493379 RMI2Q96E14 147 aa4.44□□□□□ -1.7
VPS52-219ENST00000493379 KIR2DL4Q99706 377 aa4.44□□□□□ -1.7
VPS52-219ENST00000493379 SMIM2Q9BVW6 85 aa4.44□□□□□ -1.7
VPS52-219ENST00000493379 hDV102S1A0JD36 115 aa4.43□□□□□ -1.7
VPS52-219ENST00000493379 APCSP02743 223 aa4.43□□□□□ -1.7
VPS52-219ENST00000493379 MT-ND6P03923 174 aa4.43□□□□□ -1.7
VPS52-219ENST00000493379 ANGP03950 147 aaKnown RBP4.43□□□□□ -1.7
VPS52-219ENST00000493379 FGF6P10767 208 aa4.43□□□□□ -1.7
VPS52-219ENST00000493379 GAGE6Q13070 117 aa4.43□□□□□ -1.7
VPS52-219ENST00000493379 UBE2V1Q13404 147 aa4.43□□□□□ -1.7
VPS52-219ENST00000493379 LINC00269Q8N2A0 174 aa4.43□□□□□ -1.7
VPS52-219ENST00000493379 PRELID3AQ96N28 172 aa4.43□□□□□ -1.7
VPS52-219ENST00000493379 CDC42SE2Q9NRR3 84 aa4.43□□□□□ -1.7
VPS52-219ENST00000493379 CRCT1Q9UGL9 99 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms