RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 TIRAPP58753 221 aa7.65□□□□□ -1.18
USP4-214ENST00000491791 VAMP3Q15836 100 aa7.65□□□□□ -1.18
USP4-214ENST00000491791 SLC25A29Q8N8R3 303 aa7.65□□□□□ -1.18
USP4-214ENST00000491791 OPRPNQ99935 248 aaPredicted RBP7.65□□□□□ -1.18
USP4-214ENST00000491791 K7EP13 123 aa7.64□□□□□ -1.19
USP4-214ENST00000491791 LINC00694P0DN24 101 aa7.64□□□□□ -1.19
USP4-214ENST00000491791 RPL35AP18077 110 aaKnown RBP7.64□□□□□ -1.19
USP4-214ENST00000491791 TMEM170BQ5T4T1 132 aa7.64□□□□□ -1.19
USP4-214ENST00000491791 AMMECR1LQ6DCA0 310 aa7.64□□□□□ -1.19
USP4-214ENST00000491791 HIST1H4GQ99525 98 aa7.64□□□□□ -1.19
USP4-214ENST00000491791 WFDC10AQ9H1F0 79 aa7.64□□□□□ -1.19
USP4-214ENST00000491791 NOP10Q9NPE3 64 aaKnown RBP7.64□□□□□ -1.19
USP4-214ENST00000491791 IGHV3OR16-12A0A075B7B8 117 aa7.63□□□□□ -1.19
USP4-214ENST00000491791 A0A0J9YXV3 536 aa7.63□□□□□ -1.19
USP4-214ENST00000491791 A0A1W2PPM0 123 aa7.63□□□□□ -1.19
USP4-214ENST00000491791 TSPEAR-AS2P59090 65 aa7.63□□□□□ -1.19
USP4-214ENST00000491791 C12orf74Q32Q52 190 aa7.63□□□□□ -1.19
USP4-214ENST00000491791 GTF2H5Q6ZYL4 71 aa7.63□□□□□ -1.19
USP4-214ENST00000491791 TMEM238LA0A1B0GVL6 79 aa7.62□□□□□ -1.19
USP4-214ENST00000491791 A6NJY4 79 aa7.62□□□□□ -1.19
USP4-214ENST00000491791 K7EP34 96 aa7.62□□□□□ -1.19
USP4-214ENST00000491791 UBE2D1P51668 147 aa7.62□□□□□ -1.19
USP4-214ENST00000491791 DEFB104AQ8WTQ1 72 aa7.62□□□□□ -1.19
USP4-214ENST00000491791 IGHV1-58A0A0C4DH39 117 aa7.61□□□□□ -1.19
USP4-214ENST00000491791 H3BUT2 72 aa7.61□□□□□ -1.19
USP4-214ENST00000491791 LGALS3P17931 250 aaKnown RBP7.61□□□□□ -1.19
USP4-214ENST00000491791 EMP1P54849 157 aa7.61□□□□□ -1.19
USP4-214ENST00000491791 FHL2Q14192 279 aa7.61□□□□□ -1.19
USP4-214ENST00000491791 SAMD5Q5TGI4 173 aa7.61□□□□□ -1.19
USP4-214ENST00000491791 SCGB1D4Q6XE38 83 aa7.61□□□□□ -1.19
USP4-214ENST00000491791 NTM-AS1Q6ZSK4 140 aa7.61□□□□□ -1.19
USP4-214ENST00000491791 PRKDCP78527 4128 aaKnown RBP7.6□□□□□ -1.19
USP4-214ENST00000491791 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.6□□□□□ -1.19
USP4-214ENST00000491791 IGKV2-29A2NJV5 120 aaPredicted RBP7.6□□□□□ -1.19
USP4-214ENST00000491791 GAGE10A6NGK3 116 aa7.6□□□□□ -1.19
USP4-214ENST00000491791 IGLL5B9A064 214 aa7.6□□□□□ -1.19
USP4-214ENST00000491791 IGHV3-30P01768 117 aa7.6□□□□□ -1.19
USP4-214ENST00000491791 IGHV3-30-5P0DP03 117 aa7.6□□□□□ -1.19
USP4-214ENST00000491791 FABP2P12104 132 aa7.6□□□□□ -1.19
USP4-214ENST00000491791 Q6ZUT4 128 aa7.6□□□□□ -1.19
USP4-214ENST00000491791 RNF183Q96D59 192 aa7.6□□□□□ -1.19
USP4-214ENST00000491791 VSIG2Q96IQ7 327 aa7.6□□□□□ -1.19
USP4-214ENST00000491791 NHP2Q9NX24 153 aaKnown RBP7.6□□□□□ -1.19
USP4-214ENST00000491791 X6R8D5 127 aa7.6□□□□□ -1.19
USP4-214ENST00000491791 TRGV2A0A075B6R0 118 aa7.59□□□□□ -1.19
USP4-214ENST00000491791 IGHV3-38A0A0C4DH36 116 aa7.59□□□□□ -1.19
USP4-214ENST00000491791 IGHV3-30-3P0DP02 117 aa7.59□□□□□ -1.19
USP4-214ENST00000491791 CEMP1Q6PRD7 247 aaPredicted RBP7.59□□□□□ -1.19
USP4-214ENST00000491791 CMYA5Q8N3K9 4069 aa7.58□□□□□ -1.2
USP4-214ENST00000491791 IGLV5-39A0A0G2JS06 123 aa7.58□□□□□ -1.2
USP4-214ENST00000491791 GAGE12BA1L429 117 aa7.58□□□□□ -1.2
USP4-214ENST00000491791 LYRM9A8MSI8 78 aa7.58□□□□□ -1.2
USP4-214ENST00000491791 TIMM17BO60830 172 aa7.58□□□□□ -1.2
USP4-214ENST00000491791 GAGE7O76087 117 aa7.58□□□□□ -1.2
USP4-214ENST00000491791 GAGE12FP0CL80 117 aa7.58□□□□□ -1.2
USP4-214ENST00000491791 GAGE12GP0CL81 117 aa7.58□□□□□ -1.2
USP4-214ENST00000491791 GAGE12IP0CL82 117 aa7.58□□□□□ -1.2
USP4-214ENST00000491791 HERVK_113P63121 156 aa7.58□□□□□ -1.2
USP4-214ENST00000491791 SRSF9Q13242 221 aaKnown RBP eCLIP7.58□□□□□ -1.2
USP4-214ENST00000491791 CDC42SE2Q9NRR3 84 aa7.58□□□□□ -1.2
USP4-214ENST00000491791 APOC4P55056 127 aa7.57□□□□□ -1.2
USP4-214ENST00000491791 ZFAND6Q6FIF0 208 aa7.57□□□□□ -1.2
USP4-214ENST00000491791 DGAT2L7PQ6IED9 249 aa7.57□□□□□ -1.2
USP4-214ENST00000491791 C10orf126Q8N4M7 172 aa7.57□□□□□ -1.2
USP4-214ENST00000491791 TMEM243Q9BU79 118 aa7.57□□□□□ -1.2
USP4-214ENST00000491791 TRGV4A0A0C4DH28 118 aa7.56□□□□□ -1.2
USP4-214ENST00000491791 A0A0J9YXY3 114 aa7.56□□□□□ -1.2
USP4-214ENST00000491791 GAGE12JA6NER3 117 aa7.56□□□□□ -1.2
USP4-214ENST00000491791 TMEM238C9JI98 176 aa7.56□□□□□ -1.2
USP4-214ENST00000491791 K7ERJ3 54 aa7.56□□□□□ -1.2
USP4-214ENST00000491791 GAGE4Q13068 117 aa7.56□□□□□ -1.2
USP4-214ENST00000491791 GAGE5Q13069 117 aa7.56□□□□□ -1.2
USP4-214ENST00000491791 GAGE13Q4V321 117 aa7.56□□□□□ -1.2
USP4-214ENST00000491791 LINC00242Q5T6M2 205 aa7.56□□□□□ -1.2
USP4-214ENST00000491791 RAB37Q96AX2 223 aa7.56□□□□□ -1.2
USP4-214ENST00000491791 LITAFQ99732 161 aa7.56□□□□□ -1.2
USP4-214ENST00000491791 SPANXDQ9BXN6 97 aa7.56□□□□□ -1.2
USP4-214ENST00000491791 PPDPFQ9H3Y8 114 aa7.56□□□□□ -1.2
USP4-214ENST00000491791 GEMIN7Q9H840 131 aaKnown RBP7.56□□□□□ -1.2
USP4-214ENST00000491791 SPANXCQ9NY87 97 aa7.56□□□□□ -1.2
USP4-214ENST00000491791 SPCS1Q9Y6A9 102 aa7.56□□□□□ -1.2
USP4-214ENST00000491791 TRBV6-8A0A0A6YYG3 113 aa7.54□□□□□ -1.2
USP4-214ENST00000491791 A0A0B4J2C4 111 aa7.54□□□□□ -1.2
USP4-214ENST00000491791 NDUFA1O15239 70 aa7.54□□□□□ -1.2
USP4-214ENST00000491791 CDKN2A-AS1Q9UH64 79 aa7.54□□□□□ -1.2
USP4-214ENST00000491791 NDUFA12Q9UI09 145 aa7.54□□□□□ -1.2
USP4-214ENST00000491791 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.53□□□□□ -1.2
USP4-214ENST00000491791 G3V4G9 280 aa7.53□□□□□ -1.2
USP4-214ENST00000491791 MIFP14174 115 aa7.53□□□□□ -1.2
USP4-214ENST00000491791 RPL24P83731 157 aaKnown RBP7.53□□□□□ -1.2
USP4-214ENST00000491791 KPRPQ5T749 579 aaPredicted RBP7.53□□□□□ -1.2
USP4-214ENST00000491791 TMEM101Q96IK0 257 aa7.53□□□□□ -1.2
USP4-214ENST00000491791 PRO0255Q9UI72 69 aa7.53□□□□□ -1.2
USP4-214ENST00000491791 NOTCH3Q9UM47 2321 aa7.52□□□□□ -1.2
USP4-214ENST00000491791 TRAV8-3A0A0A6YYJ7 113 aa7.52□□□□□ -1.21
USP4-214ENST00000491791 A0A1B0GUV1 79 aa7.52□□□□□ -1.21
USP4-214ENST00000491791 A8MZ25 164 aa7.52□□□□□ -1.21
USP4-214ENST00000491791 F5H768 121 aa7.52□□□□□ -1.21
USP4-214ENST00000491791 CFC1BP0CG36 223 aa7.52□□□□□ -1.21
USP4-214ENST00000491791 CFC1P0CG37 223 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms