RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 DOCK2Q92608 1830 aa0.41□□□□□ -2.34
RFC4-213ENST00000489028 TNCP24821 2201 aa0.4□□□□□ -2.35
RFC4-213ENST00000489028 SFT2D2O95562 160 aa0.4□□□□□ -2.35
RFC4-213ENST00000489028 HAMPP81172 84 aa0.4□□□□□ -2.35
RFC4-213ENST00000489028 HSD52Q0P140 79 aa0.4□□□□□ -2.35
RFC4-213ENST00000489028 FAM213BQ8TBF2 198 aa0.4□□□□□ -2.35
RFC4-213ENST00000489028 FAM167A-AS1Q96KT0 104 aa0.4□□□□□ -2.35
RFC4-213ENST00000489028 FAIMQ9NVQ4 179 aa0.4□□□□□ -2.35
RFC4-213ENST00000489028 USP24Q9UPU5 2620 aa0.4□□□□□ -2.35
RFC4-213ENST00000489028 ROBO1Q9Y6N7 1651 aa0.4□□□□□ -2.35
RFC4-213ENST00000489028 ASXL3Q9C0F0 2248 aa0.4□□□□□ -2.35
RFC4-213ENST00000489028 TMEM262E9PQX1 116 aa0.39□□□□□ -2.35
RFC4-213ENST00000489028 KRTDAPP60985 99 aa0.39□□□□□ -2.35
RFC4-213ENST00000489028 KRTAP21-1Q3LI58 79 aa0.39□□□□□ -2.35
RFC4-213ENST00000489028 Q5BKY6 102 aa0.39□□□□□ -2.35
RFC4-213ENST00000489028 MANBALQ9NQG1 85 aa0.39□□□□□ -2.35
RFC4-213ENST00000489028 CDC42SE2Q9NRR3 84 aa0.39□□□□□ -2.35
RFC4-213ENST00000489028 SPCS1Q9Y6A9 102 aa0.39□□□□□ -2.35
RFC4-213ENST00000489028 LRRC37A2A6NM11 1700 aa0.38□□□□□ -2.35
RFC4-213ENST00000489028 F8P00451 2351 aa0.38□□□□□ -2.35
RFC4-213ENST00000489028 SHANK2Q9UPX8 1470 aa0.38□□□□□ -2.35
RFC4-213ENST00000489028 MGPP08493 103 aa0.38□□□□□ -2.35
RFC4-213ENST00000489028 COX6CP09669 75 aa0.38□□□□□ -2.35
RFC4-213ENST00000489028 SNCAP37840 140 aa0.38□□□□□ -2.35
RFC4-213ENST00000489028 NXT2Q9NPJ8 142 aaKnown RBP0.38□□□□□ -2.35
RFC4-213ENST00000489028 ARHGAP5Q13017 1502 aa0.38□□□□□ -2.35
RFC4-213ENST00000489028 PIEZO1Q92508 2521 aa0.37□□□□□ -2.35
RFC4-213ENST00000489028 FAM208BQ5VWN6 2430 aa0.37□□□□□ -2.35
RFC4-213ENST00000489028 TRAV22A0A0B4J277 110 aa0.37□□□□□ -2.35
RFC4-213ENST00000489028 TMEM218A2RU14 115 aa0.37□□□□□ -2.35
RFC4-213ENST00000489028 SPINK1P00995 79 aa0.37□□□□□ -2.35
RFC4-213ENST00000489028 Q0VG73 95 aa0.37□□□□□ -2.35
RFC4-213ENST00000489028 C14orf144Q96I85 54 aa0.37□□□□□ -2.35
RFC4-213ENST00000489028 C12orf57Q99622 126 aa0.37□□□□□ -2.35
RFC4-213ENST00000489028 LINC00472Q9H8W2 130 aa0.37□□□□□ -2.35
RFC4-213ENST00000489028 PRO1854Q9UHT4 67 aa0.37□□□□□ -2.35
RFC4-213ENST00000489028 PRO0255Q9UI72 69 aa0.37□□□□□ -2.35
RFC4-213ENST00000489028 ARL2-SNX15V9GYD0 113 aa0.37□□□□□ -2.35
RFC4-213ENST00000489028 POLQO75417 2590 aa0.36□□□□□ -2.35
RFC4-213ENST00000489028 SHROOM2Q13796 1616 aa0.36□□□□□ -2.35
RFC4-213ENST00000489028 CRYM-AS1A6NIL9 109 aa0.36□□□□□ -2.35
RFC4-213ENST00000489028 PHGR1C9JFL3 82 aa0.36□□□□□ -2.35
RFC4-213ENST00000489028 TRAPPC2P0DI81 140 aa0.36□□□□□ -2.35
RFC4-213ENST00000489028 TRAPPC2BP0DI82 140 aa0.36□□□□□ -2.35
RFC4-213ENST00000489028 UBE2D3P61077 147 aa0.36□□□□□ -2.35
RFC4-213ENST00000489028 UBE2D2P62837 147 aa0.36□□□□□ -2.35
RFC4-213ENST00000489028 Q6JHZ5 121 aa0.36□□□□□ -2.35
RFC4-213ENST00000489028 MYOM1P52179 1685 aa0.36□□□□□ -2.35
RFC4-213ENST00000489028 KIF21AQ7Z4S6 1674 aa0.36□□□□□ -2.35
RFC4-213ENST00000489028 PTPRZ1P23471 2315 aaPredicted RBP0.36□□□□□ -2.35
RFC4-213ENST00000489028 NAV2Q8IVL1 2488 aa0.36□□□□□ -2.35
RFC4-213ENST00000489028 TRAV30A0A087WSZ9 112 aa0.35□□□□□ -2.35
RFC4-213ENST00000489028 BCE1O60756 84 aa0.35□□□□□ -2.35
RFC4-213ENST00000489028 IGLC1P0CG04 106 aa0.35□□□□□ -2.35
RFC4-213ENST00000489028 RBP2P50120 134 aa0.35□□□□□ -2.35
RFC4-213ENST00000489028 TMEM263Q8WUH6 116 aaKnown RBP0.35□□□□□ -2.35
RFC4-213ENST00000489028 ERCC6L2Q5T890 1561 aa0.35□□□□□ -2.35
RFC4-213ENST00000489028 AHCTF1Q8WYP5 2266 aa0.35□□□□□ -2.35
RFC4-213ENST00000489028 SPTBN2O15020 2390 aa0.34□□□□□ -2.35
RFC4-213ENST00000489028 PSME4Q14997 1843 aa0.34□□□□□ -2.35
RFC4-213ENST00000489028 ATP6V1G2-DDX39BF2Z307 99 aa0.34□□□□□ -2.36
RFC4-213ENST00000489028 UBA52P62987 128 aaKnown RBP0.34□□□□□ -2.36
RFC4-213ENST00000489028 FAM223AQ8IWN6 122 aa0.34□□□□□ -2.36
RFC4-213ENST00000489028 LRP6O75581 1613 aa0.34□□□□□ -2.36
RFC4-213ENST00000489028 WNK3Q9BYP7 1800 aa0.34□□□□□ -2.36
RFC4-213ENST00000489028 ZFYVE16Q7Z3T8 1539 aa0.33□□□□□ -2.36
RFC4-213ENST00000489028 SPHKAPQ2M3C7 1700 aa0.33□□□□□ -2.36
RFC4-213ENST00000489028 CACNA1CQ13936 2221 aa0.33□□□□□ -2.36
RFC4-213ENST00000489028 KDM3BQ7LBC6 1761 aa0.33□□□□□ -2.36
RFC4-213ENST00000489028 Q8IZM0 81 aa0.33□□□□□ -2.36
RFC4-213ENST00000489028 ACBD7Q8N6N7 88 aa0.33□□□□□ -2.36
RFC4-213ENST00000489028 SPRR4Q96PI1 79 aa0.33□□□□□ -2.36
RFC4-213ENST00000489028 TP53AIP1Q9HCN2 124 aa0.33□□□□□ -2.36
RFC4-213ENST00000489028 RAPGEF6Q8TEU7 1601 aa0.33□□□□□ -2.36
RFC4-213ENST00000489028 ZNF236Q9UL36 1845 aa0.33□□□□□ -2.36
RFC4-213ENST00000489028 EHBP1L1Q8N3D4 1523 aa0.33□□□□□ -2.36
RFC4-213ENST00000489028 ZFYVE26Q68DK2 2539 aa0.32□□□□□ -2.36
RFC4-213ENST00000489028 A0A1B0GWA3 101 aa0.32□□□□□ -2.36
RFC4-213ENST00000489028 M0R3E3 92 aa0.32□□□□□ -2.36
RFC4-213ENST00000489028 NDUFC1O43677 76 aa0.32□□□□□ -2.36
RFC4-213ENST00000489028 SAA2P0DJI9 122 aaPredicted RBP0.32□□□□□ -2.36
RFC4-213ENST00000489028 SEC11AP67812 179 aa0.32□□□□□ -2.36
RFC4-213ENST00000489028 PIGYQ3MUY2 71 aa0.32□□□□□ -2.36
RFC4-213ENST00000489028 SFTA2Q6UW10 78 aa0.32□□□□□ -2.36
RFC4-213ENST00000489028 AP4S1Q9Y587 144 aa0.32□□□□□ -2.36
RFC4-213ENST00000489028 SYNE1Q8NF91 8797 aaKnown RBP0.32□□□□□ -2.36
RFC4-213ENST00000489028 KMT2DO14686 5537 aa0.32□□□□□ -2.36
RFC4-213ENST00000489028 TCHHQ07283 1943 aa0.32□□□□□ -2.36
RFC4-213ENST00000489028 HMGXB3Q12766 1538 aa0.32□□□□□ -2.36
RFC4-213ENST00000489028 ANK2Q01484 3957 aa0.32□□□□□ -2.36
RFC4-213ENST00000489028 SBF2Q86WG5 1849 aa0.31□□□□□ -2.36
RFC4-213ENST00000489028 MDN1Q9NU22 5596 aa0.31□□□□□ -2.36
RFC4-213ENST00000489028 hADV29S1A0JD25 119 aa0.31□□□□□ -2.36
RFC4-213ENST00000489028 GNGT2O14610 69 aa0.31□□□□□ -2.36
RFC4-213ENST00000489028 CFDP00746 253 aaPredicted RBP0.31□□□□□ -2.36
RFC4-213ENST00000489028 S100A10P60903 97 aa0.31□□□□□ -2.36
RFC4-213ENST00000489028 PRO1933Q9H354 126 aa0.31□□□□□ -2.36
RFC4-213ENST00000489028 DIP2CQ9Y2E4 1556 aa0.31□□□□□ -2.36
RFC4-213ENST00000489028 KDM5AP29375 1690 aaKnown RBP0.3□□□□□ -2.36
RFC4-213ENST00000489028 IGF2RP11717 2491 aa0.3□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 205.4 ms