RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 ABHD14BQ96IU4 210 aa0.6□□□□□ -2.31
SMC4-220ENST00000488017 NMNAT3Q96T66 252 aa0.6□□□□□ -2.31
SMC4-220ENST00000488017 CCL13Q99616 98 aa0.6□□□□□ -2.31
SMC4-220ENST00000488017 CMC2Q9NRP2 79 aa0.6□□□□□ -2.31
SMC4-220ENST00000488017 INTS1Q8N201 2190 aaKnown RBP0.6□□□□□ -2.31
SMC4-220ENST00000488017 SPTBN5Q9NRC6 3674 aaKnown RBP0.6□□□□□ -2.31
SMC4-220ENST00000488017 SSC5DA1L4H1 1573 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 CACNA1CQ13936 2221 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 TRBV20OR9-2A0A075B6H5 130 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 TRAV8-1A0A0A6YYK1 113 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 IGHV3-15A0A0B4J1V0 119 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 TCRBV4S1A1TA0A5B7 111 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 FAM223BA6NKX1 122 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 K7EMI3 77 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 ATOX1O00244 68 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 SSSCA1O60232 199 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 TIMM17BO60830 172 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 CST7O76096 145 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 HBDP02042 147 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 SMIM13P0DJ93 91 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 NPPCP23582 126 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 FAUP35544 74 aaKnown RBP0.59□□□□□ -2.31
SMC4-220ENST00000488017 UBE2D1P51668 147 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 DYNLT3P51808 116 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 UBE2G1P62253 170 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 HBBP68871 147 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 CCL8P80075 99 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 KLKP1Q107X0 134 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 RHOHQ15669 191 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 Q1T7F1 81 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 TMEM155Q4W5P6 130 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 CHCHD2P9Q5T1J5 151 aaPredicted RBP0.59□□□□□ -2.31
SMC4-220ENST00000488017 LINC01545Q5VT33 79 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 Q5VV11 94 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 C7orf65Q6ZTY9 151 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 FAM19A2Q8N3H0 131 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 TOMM5Q8N4H5 51 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 DEFB119Q8N690 84 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 SERP2Q8N6R1 65 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 TOMM6Q96B49 74 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 C2orf50Q96LR7 162 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 ZNF714Q96N38 554 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 AP1S3Q96PC3 154 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 TMEM70Q9BUB7 260 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 NMES1Q9C002 83 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 CST11Q9H112 138 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 CKLFQ9UBR5 152 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 LAMTOR3Q9UHA4 124 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 NOP16Q9Y3C1 178 aaKnown RBP0.59□□□□□ -2.31
SMC4-220ENST00000488017 C22orf24Q9Y442 160 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 LY96Q9Y6Y9 160 aa0.59□□□□□ -2.31
SMC4-220ENST00000488017 SPENQ96T58 3664 aaKnown RBP0.58□□□□□ -2.32
SMC4-220ENST00000488017 TRGV2A0A075B6R0 118 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 IGKV2D-26A0A0A0MRZ7 120 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 TRAV2A0A0B4J234 112 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 IGHV1-24A0A0C4DH33 117 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 TEX49A0A1B0GTD5 131 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 UBE2L5PA0A1B0GUS4 154 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 hDV103S1A0JD37 113 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 IRGMA1A4Y4 181 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 IQCF6A8MYZ5 107 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 C9JCJ5 164 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 C5orf67F2Z3F1 127 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 PPYP01298 95 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 IGHV1-69P01742 117 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 BAALC-AS2P0C853 105 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 CXCL8P10145 99 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 GCHFRP30047 84 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 S100A3P33764 101 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 XCL1P47992 114 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 SNRPGP62308 76 aaKnown RBP0.58□□□□□ -2.32
SMC4-220ENST00000488017 SUPT4H1P63272 117 aaKnown RBP0.58□□□□□ -2.32
SMC4-220ENST00000488017 UBE2L3P68036 154 aaKnown RBP0.58□□□□□ -2.32
SMC4-220ENST00000488017 MRPS36P82909 103 aaKnown RBP0.58□□□□□ -2.32
SMC4-220ENST00000488017 RBM3P98179 157 aaKnown RBP0.58□□□□□ -2.32
SMC4-220ENST00000488017 ZNF56Q15929 161 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 C12orf73Q69YU5 71 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 SOSTDC1Q6X4U4 206 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 VMO1Q7Z5L0 202 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 COA5Q86WW8 74 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 NDUFA11Q86Y39 141 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 Q8IYB0 196 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 CNEP1R1Q8N9A8 125 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 MCEEQ96PE7 176 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 TRGV9Q99603 122 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 NABP2Q9BQ15 211 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 SLC50A1Q9BRV3 221 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 FAM103A1Q9BTL3 118 aaKnown RBP0.58□□□□□ -2.32
SMC4-220ENST00000488017 SPANXDQ9BXN6 97 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 EIF5A2Q9GZV4 153 aaKnown RBP0.58□□□□□ -2.32
SMC4-220ENST00000488017 NXT2Q9NPJ8 142 aaKnown RBP0.58□□□□□ -2.32
SMC4-220ENST00000488017 MRPL35Q9NZE8 188 aaKnown RBP0.58□□□□□ -2.32
SMC4-220ENST00000488017 IL36BQ9NZH7 164 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 EPDR1Q9UM22 224 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 CADP27708 2225 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 KIAA0100Q14667 2235 aaKnown RBP0.58□□□□□ -2.32
SMC4-220ENST00000488017 SPAG17Q6Q759 2223 aa0.58□□□□□ -2.32
SMC4-220ENST00000488017 DIDO1Q9BTC0 2240 aaKnown RBP0.58□□□□□ -2.32
SMC4-220ENST00000488017 RANBP2P49792 3224 aaKnown RBP0.58□□□□□ -2.32
SMC4-220ENST00000488017 RELNP78509 3460 aa0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms