RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.91□□□□□ -0.34
VIM-206ENST00000487938 CDIP1Q9H305 208 aa12.91□□□□□ -0.34
VIM-206ENST00000487938 SLC25A20O43772 301 aa12.91□□□□□ -0.34
VIM-206ENST00000487938 COX6A2Q02221 97 aa12.91□□□□□ -0.34
VIM-206ENST00000487938 WFDC11Q8NEX6 87 aa12.9□□□□□ -0.34
VIM-206ENST00000487938 CCL24O00175 119 aa12.9□□□□□ -0.35
VIM-206ENST00000487938 DAND5Q8N907 189 aa12.9□□□□□ -0.35
VIM-206ENST00000487938 LINC00694P0DN24 101 aa12.89□□□□□ -0.35
VIM-206ENST00000487938 SCGB1A1P11684 91 aa12.89□□□□□ -0.35
VIM-206ENST00000487938 NDUFA7O95182 113 aa12.88□□□□□ -0.35
VIM-206ENST00000487938 Q6ZTI0 123 aa12.88□□□□□ -0.35
VIM-206ENST00000487938 SPANXDQ9BXN6 97 aa12.88□□□□□ -0.35
VIM-206ENST00000487938 ESM1Q9NQ30 184 aa12.88□□□□□ -0.35
VIM-206ENST00000487938 SPANXCQ9NY87 97 aa12.88□□□□□ -0.35
VIM-206ENST00000487938 TRIAP1O43715 76 aa12.88□□□□□ -0.35
VIM-206ENST00000487938 MIAQ16674 131 aa12.88□□□□□ -0.35
VIM-206ENST00000487938 TMEM101Q96IK0 257 aa12.88□□□□□ -0.35
VIM-206ENST00000487938 ITPR3Q14573 2671 aa12.88□□□□□ -0.35
VIM-206ENST00000487938 ZFAND6Q6FIF0 208 aa12.87□□□□□ -0.35
VIM-206ENST00000487938 TMEM86BQ8N661 226 aa12.87□□□□□ -0.35
VIM-206ENST00000487938 CLUHP3Q96NS8 147 aa12.87□□□□□ -0.35
VIM-206ENST00000487938 TRAV25A0A0B4J276 109 aa12.86□□□□□ -0.35
VIM-206ENST00000487938 TEX29Q8N6K0 151 aa12.86□□□□□ -0.35
VIM-206ENST00000487938 CITED2Q99967 270 aaPredicted RBP12.86□□□□□ -0.35
VIM-206ENST00000487938 NOTCH3Q9UM47 2321 aa12.86□□□□□ -0.35
VIM-206ENST00000487938 NIPBLQ6KC79 2804 aaeCLIP12.86□□□□□ -0.352e-7■■□□□ 12.5
VIM-206ENST00000487938 TIRAPP58753 221 aa12.86□□□□□ -0.35
VIM-206ENST00000487938 ATXN8Q156A1 80 aa12.85□□□□□ -0.35
VIM-206ENST00000487938 HIST2H2BCQ6DN03 193 aa12.85□□□□□ -0.35
VIM-206ENST00000487938 IL17DQ8TAD2 202 aa12.85□□□□□ -0.35
VIM-206ENST00000487938 TRBV30A0A0K0K1B3 111 aa12.85□□□□□ -0.35
VIM-206ENST00000487938 MT-ATP8P03928 68 aa12.85□□□□□ -0.35
VIM-206ENST00000487938 NTM-AS1Q6ZSK4 140 aa12.85□□□□□ -0.35
VIM-206ENST00000487938 ZNF625Q96I27 306 aaPredicted RBP12.85□□□□□ -0.35
VIM-206ENST00000487938 GAGE12JA6NER3 117 aa12.84□□□□□ -0.35
VIM-206ENST00000487938 GAGE4Q13068 117 aa12.84□□□□□ -0.35
VIM-206ENST00000487938 GAGE5Q13069 117 aa12.84□□□□□ -0.35
VIM-206ENST00000487938 LINC01620Q4KN68 170 aa12.84□□□□□ -0.35
VIM-206ENST00000487938 LINC00242Q5T6M2 205 aa12.84□□□□□ -0.35
VIM-206ENST00000487938 NOP10Q9NPE3 64 aaKnown RBP12.84□□□□□ -0.35
VIM-206ENST00000487938 TRAV13-1A0A0B4J241 112 aa12.83□□□□□ -0.35
VIM-206ENST00000487938 A0A0U1RRA0 63 aa12.83□□□□□ -0.35
VIM-206ENST00000487938 K7EQD1 137 aa12.83□□□□□ -0.35
VIM-206ENST00000487938 RPL36AP83881 106 aaKnown RBP12.83□□□□□ -0.35
VIM-206ENST00000487938 RPL36ALQ969Q0 106 aaKnown RBP12.83□□□□□ -0.35
VIM-206ENST00000487938 ICOSQ9Y6W8 199 aa12.83□□□□□ -0.35
VIM-206ENST00000487938 IGLV5-45A0A087WSX0 123 aa12.83□□□□□ -0.36
VIM-206ENST00000487938 XGP55808 180 aa12.83□□□□□ -0.36
VIM-206ENST00000487938 WFDC10AQ9H1F0 79 aa12.83□□□□□ -0.36
VIM-206ENST00000487938 SETD2Q9BYW2 2564 aaPredicted RBP12.83□□□□□ -0.36
VIM-206ENST00000487938 CCDC168Q8NDH2 2452 aa12.82□□□□□ -0.36
VIM-206ENST00000487938 NDUFA1O15239 70 aa12.82□□□□□ -0.36
VIM-206ENST00000487938 NTN5Q8WTR8 489 aaPredicted RBP12.81□□□□□ -0.36
VIM-206ENST00000487938 Q9H8V8 135 aa12.81□□□□□ -0.36
VIM-206ENST00000487938 YAE1D1Q9NRH1 226 aa12.81□□□□□ -0.36
VIM-206ENST00000487938 HERVK_113P63121 156 aa12.81□□□□□ -0.36
VIM-206ENST00000487938 GIG44P09565 113 aaPredicted RBP12.8□□□□□ -0.36
VIM-206ENST00000487938 RPL35AP18077 110 aaKnown RBP12.8□□□□□ -0.36
VIM-206ENST00000487938 TRAV4A0A0B4J268 109 aa12.79□□□□□ -0.36
VIM-206ENST00000487938 CLEC2BQ92478 149 aa12.79□□□□□ -0.36
VIM-206ENST00000487938 FLNAP21333 2647 aaKnown RBP12.79□□□□□ -0.36
VIM-206ENST00000487938 TIMM17BO60830 172 aa12.79□□□□□ -0.36
VIM-206ENST00000487938 PLA2G2AP14555 144 aa12.79□□□□□ -0.36
VIM-206ENST00000487938 DAZ2Q13117 558 aaKnown RBP12.79□□□□□ -0.36
VIM-206ENST00000487938 DAZ4Q86SG3 579 aaKnown RBP12.79□□□□□ -0.36
VIM-206ENST00000487938 DAZ3Q9NR90 486 aaKnown RBP12.79□□□□□ -0.36
VIM-206ENST00000487938 TRBV10-1A0A0K0K1A3 114 aa12.78□□□□□ -0.36
VIM-206ENST00000487938 RPL13AP40429 203 aaKnown RBP12.78□□□□□ -0.36
VIM-206ENST00000487938 IGLV5-39A0A0G2JS06 123 aa12.78□□□□□ -0.36
VIM-206ENST00000487938 M0QXV9 152 aa12.78□□□□□ -0.36
VIM-206ENST00000487938 GAGE7O76087 117 aa12.78□□□□□ -0.36
VIM-206ENST00000487938 GAGE12FP0CL80 117 aa12.78□□□□□ -0.36
VIM-206ENST00000487938 GAGE12GP0CL81 117 aa12.78□□□□□ -0.36
VIM-206ENST00000487938 GAGE12IP0CL82 117 aa12.78□□□□□ -0.36
VIM-206ENST00000487938 CIRBPQ14011 172 aaKnown RBP12.78□□□□□ -0.36
VIM-206ENST00000487938 LINC01006Q8NI28 216 aa12.78□□□□□ -0.36
VIM-206ENST00000487938 C2CD3Q4AC94 2353 aa12.77□□□□□ -0.36
VIM-206ENST00000487938 JMJD1CQ15652 2540 aa12.77□□□□□ -0.36
VIM-206ENST00000487938 SETXQ7Z333 2677 aaKnown RBP12.77□□□□□ -0.36
VIM-206ENST00000487938 TRBV10-2A0A0K0K1G8 114 aa12.77□□□□□ -0.36
VIM-206ENST00000487938 LOC100131303A0A0U1RQF7 123 aa12.77□□□□□ -0.36
VIM-206ENST00000487938 IFITM1P13164 125 aa12.77□□□□□ -0.36
VIM-206ENST00000487938 CDC42SE2Q9NRR3 84 aa12.77□□□□□ -0.36
VIM-206ENST00000487938 TEX49A0A1B0GTD5 131 aa12.77□□□□□ -0.37
VIM-206ENST00000487938 SMIM1B2RUZ4 78 aa12.77□□□□□ -0.37
VIM-206ENST00000487938 COX6CP09669 75 aa12.77□□□□□ -0.37
VIM-206ENST00000487938 LINC00308Q8TCZ7 52 aa12.76□□□□□ -0.37
VIM-206ENST00000487938 TENM4Q6N022 2769 aa12.76□□□□□ -0.37
VIM-206ENST00000487938 TRGV2A0A075B6R0 118 aa12.76□□□□□ -0.37
VIM-206ENST00000487938 H7C423 109 aa12.76□□□□□ -0.37
VIM-206ENST00000487938 CSDC2Q9Y534 153 aaKnown RBP12.76□□□□□ -0.37
VIM-206ENST00000487938 PLAC8L1A1L4L8 177 aa12.75□□□□□ -0.37
VIM-206ENST00000487938 CIDEAO60543 219 aa12.75□□□□□ -0.37
VIM-206ENST00000487938 CKS1BP61024 79 aa12.75□□□□□ -0.37
VIM-206ENST00000487938 RNF183Q96D59 192 aa12.75□□□□□ -0.37
VIM-206ENST00000487938 C2orf82Q6UX34 121 aa12.74□□□□□ -0.37
VIM-206ENST00000487938 J3QKU1 62 aa12.74□□□□□ -0.37
VIM-206ENST00000487938 UBE2L6O14933 153 aa12.74□□□□□ -0.37
VIM-206ENST00000487938 TMEM262E9PQX1 116 aa12.73□□□□□ -0.37
VIM-206ENST00000487938 KRTAP1-1Q07627 177 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms