RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 PTPRQQ9UMZ3 2332 aa12.19□□□□□ -0.46
COL7A1-210ENST00000487017 TIMM17BO60830 172 aa12.19□□□□□ -0.46
COL7A1-210ENST00000487017 FAM19A1Q7Z5A9 133 aa12.19□□□□□ -0.46
COL7A1-210ENST00000487017 TRBV6-8A0A0A6YYG3 113 aa12.19□□□□□ -0.46
COL7A1-210ENST00000487017 TRBV6-4A0A1B0GX49 114 aa12.19□□□□□ -0.46
COL7A1-210ENST00000487017 KLLNB2CW77 178 aa12.18□□□□□ -0.46
COL7A1-210ENST00000487017 A0A087WZ39 114 aa12.18□□□□□ -0.46
COL7A1-210ENST00000487017 A0A0U1RQV1 116 aa12.18□□□□□ -0.46
COL7A1-210ENST00000487017 GAS8-AS1O95177 125 aa12.18□□□□□ -0.46
COL7A1-210ENST00000487017 HCFC1P51610 2035 aa12.18□□□□□ -0.46
COL7A1-210ENST00000487017 CNFNQ9BYD5 112 aa12.17□□□□□ -0.46
COL7A1-210ENST00000487017 ATP5EP2Q5VTU8 51 aa12.17□□□□□ -0.46
COL7A1-210ENST00000487017 MRPS12O15235 138 aaKnown RBP12.17□□□□□ -0.46
COL7A1-210ENST00000487017 POLR2KP53803 58 aaKnown RBP12.17□□□□□ -0.46
COL7A1-210ENST00000487017 Q8N976 141 aa12.17□□□□□ -0.46
COL7A1-210ENST00000487017 MUC6Q6W4X9 2439 aa12.17□□□□□ -0.46
COL7A1-210ENST00000487017 PRR14LQ5THK1 2151 aa12.17□□□□□ -0.46
COL7A1-210ENST00000487017 A8MZ25 164 aa12.16□□□□□ -0.46
COL7A1-210ENST00000487017 CRYGDP07320 174 aa12.16□□□□□ -0.46
COL7A1-210ENST00000487017 PRO3102Q9H379 93 aa12.15□□□□□ -0.46
COL7A1-210ENST00000487017 C20orf197Q8N268 126 aa12.15□□□□□ -0.46
COL7A1-210ENST00000487017 C9orf85Q96MD7 179 aa12.15□□□□□ -0.46
COL7A1-210ENST00000487017 CEP192Q8TEP8 1941 aa12.15□□□□□ -0.46
COL7A1-210ENST00000487017 URB1-AS1Q96HZ7 61 aa12.14□□□□□ -0.47
COL7A1-210ENST00000487017 Q6ZSV7 163 aa12.14□□□□□ -0.47
COL7A1-210ENST00000487017 USP17L23D6RBM5 183 aa12.14□□□□□ -0.47
COL7A1-210ENST00000487017 FAM19A5Q7Z5A7 132 aaPredicted RBP12.14□□□□□ -0.47
COL7A1-210ENST00000487017 C3orf22Q8N5N4 141 aa12.14□□□□□ -0.47
COL7A1-210ENST00000487017 UBE2D4Q9Y2X8 147 aa12.14□□□□□ -0.47
COL7A1-210ENST00000487017 WFDC10BQ8IUB3 73 aa12.13□□□□□ -0.47
COL7A1-210ENST00000487017 PSMG3-AS1Q96PY0 264 aa12.13□□□□□ -0.47
COL7A1-210ENST00000487017 WNK1Q9H4A3 2382 aa12.13□□□□□ -0.47
COL7A1-210ENST00000487017 TTC28Q96AY4 2481 aa12.13□□□□□ -0.47
COL7A1-210ENST00000487017 TANC2Q9HCD6 1990 aa12.13□□□□□ -0.47
COL7A1-210ENST00000487017 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.13□□□□□ -0.47
COL7A1-210ENST00000487017 C14orf177Q52M58 125 aa12.13□□□□□ -0.47
COL7A1-210ENST00000487017 XAGE1AQ9HD64 81 aa12.13□□□□□ -0.47
COL7A1-210ENST00000487017 Q6ZS46 218 aa12.13□□□□□ -0.47
COL7A1-210ENST00000487017 MRPL55Q7Z7F7 128 aaKnown RBP12.13□□□□□ -0.47
COL7A1-210ENST00000487017 DCANP1Q8TF63 244 aa12.13□□□□□ -0.47
COL7A1-210ENST00000487017 FAM236DA0A1B0GTK5 79 aa12.12□□□□□ -0.47
COL7A1-210ENST00000487017 FAM236CP0DP71 79 aa12.12□□□□□ -0.47
COL7A1-210ENST00000487017 ENHOQ6UWT2 76 aa12.12□□□□□ -0.47
COL7A1-210ENST00000487017 A0A0J9YWU9 116 aa12.12□□□□□ -0.47
COL7A1-210ENST00000487017 ZNF702PQ9H963 129 aa12.12□□□□□ -0.47
COL7A1-210ENST00000487017 LST1O00453 97 aa12.12□□□□□ -0.47
COL7A1-210ENST00000487017 IGLV1-40P01703 118 aa12.11□□□□□ -0.47
COL7A1-210ENST00000487017 DEFB131BA0A096LNP1 70 aa12.11□□□□□ -0.47
COL7A1-210ENST00000487017 MRPS36P82909 103 aaKnown RBP12.11□□□□□ -0.47
COL7A1-210ENST00000487017 SPG11Q96JI7 2443 aa12.11□□□□□ -0.47
COL7A1-210ENST00000487017 LINC00482Q8N8I6 264 aa12.11□□□□□ -0.47
COL7A1-210ENST00000487017 PLXNB1O43157 2135 aa12.11□□□□□ -0.47
COL7A1-210ENST00000487017 CLUHP3Q96NS8 147 aa12.1□□□□□ -0.47
COL7A1-210ENST00000487017 V9GYY9 64 aa12.1□□□□□ -0.47
COL7A1-210ENST00000487017 C6orf99Q4VX62 202 aa12.1□□□□□ -0.47
COL7A1-210ENST00000487017 UBE2D1P51668 147 aa12.09□□□□□ -0.47
COL7A1-210ENST00000487017 BDP1A6H8Y1 2624 aa12.09□□□□□ -0.47
COL7A1-210ENST00000487017 IMUPQ9GZP8 106 aa12.08□□□□□ -0.48
COL7A1-210ENST00000487017 DSCAMO60469 2012 aa12.08□□□□□ -0.48
COL7A1-210ENST00000487017 IGIPA6NJ69 53 aa12.07□□□□□ -0.48
COL7A1-210ENST00000487017 C1orf158Q8N1D5 194 aa12.07□□□□□ -0.48
COL7A1-210ENST00000487017 IL17DQ8TAD2 202 aa12.07□□□□□ -0.48
COL7A1-210ENST00000487017 LRP4O75096 1905 aa12.07□□□□□ -0.48
COL7A1-210ENST00000487017 MIFP14174 115 aa12.07□□□□□ -0.48
COL7A1-210ENST00000487017 INAFM1C9JVW0 142 aa12.06□□□□□ -0.48
COL7A1-210ENST00000487017 HILS1P60008 231 aa12.06□□□□□ -0.48
COL7A1-210ENST00000487017 C3orf84H3BNL1 204 aa12.06□□□□□ -0.48
COL7A1-210ENST00000487017 CCDC179H3BU77 68 aa12.06□□□□□ -0.48
COL7A1-210ENST00000487017 BBC3Q96PG8 261 aaPredicted RBP12.06□□□□□ -0.48
COL7A1-210ENST00000487017 PPDPFQ9H3Y8 114 aa12.06□□□□□ -0.48
COL7A1-210ENST00000487017 FAM240AA0A1B0GVK7 77 aa12.05□□□□□ -0.48
COL7A1-210ENST00000487017 ACACBO00763 2458 aa12.05□□□□□ -0.48
COL7A1-210ENST00000487017 CD164L2Q6UWJ8 174 aa12.05□□□□□ -0.48
COL7A1-210ENST00000487017 IGKV2-28A0A075B6P5 120 aa12.05□□□□□ -0.48
COL7A1-210ENST00000487017 NDUFA7O95182 113 aa12.05□□□□□ -0.48
COL7A1-210ENST00000487017 IGKV2D-28P01615 120 aa12.05□□□□□ -0.48
COL7A1-210ENST00000487017 XGP55808 180 aa12.05□□□□□ -0.48
COL7A1-210ENST00000487017 HRCT1Q6UXD1 115 aa12.05□□□□□ -0.48
COL7A1-210ENST00000487017 NDUFC2-KCTD14E9PQ53 114 aa12.04□□□□□ -0.48
COL7A1-210ENST00000487017 SPINK6Q6UWN8 80 aa12.04□□□□□ -0.48
COL7A1-210ENST00000487017 LINC00526Q96FQ7 95 aa12.04□□□□□ -0.48
COL7A1-210ENST00000487017 C18orf65Q6ZTR6 163 aa12.04□□□□□ -0.48
COL7A1-210ENST00000487017 LOC100131303A0A0U1RQF7 123 aa12.03□□□□□ -0.48
COL7A1-210ENST00000487017 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.03□□□□□ -0.48
COL7A1-210ENST00000487017 LINC00959A0A1B0GUT2 108 aa12.03□□□□□ -0.48
COL7A1-210ENST00000487017 PRM2P04554 102 aa12.03□□□□□ -0.48
COL7A1-210ENST00000487017 PTPRSQ13332 1948 aa12.03□□□□□ -0.48
COL7A1-210ENST00000487017 POM121L12Q8N7R1 296 aa12.03□□□□□ -0.48
COL7A1-210ENST00000487017 SMIM11BQ8TCY0 68 aa12.03□□□□□ -0.48
COL7A1-210ENST00000487017 IGLV2-18A0A075B6J9 118 aa12.03□□□□□ -0.48
COL7A1-210ENST00000487017 CCKP06307 115 aa12.02□□□□□ -0.48
COL7A1-210ENST00000487017 KIR2DL5BQ8NHK3 375 aa12.02□□□□□ -0.48
COL7A1-210ENST00000487017 HIVEP2P31629 2446 aa12.02□□□□□ -0.48
COL7A1-210ENST00000487017 SERP2Q8N6R1 65 aa12.01□□□□□ -0.49
COL7A1-210ENST00000487017 M0R2N4 97 aa12□□□□□ -0.49
COL7A1-210ENST00000487017 SYCNQ0VAF6 134 aa12□□□□□ -0.49
COL7A1-210ENST00000487017 UBE2D3P61077 147 aa12□□□□□ -0.49
COL7A1-210ENST00000487017 UBE2D2P62837 147 aa12□□□□□ -0.49
COL7A1-210ENST00000487017 IGLV4-69A0A075B6H9 119 aa12□□□□□ -0.49
COL7A1-210ENST00000487017 K7ERS5 55 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms