RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 M0R378 163 aa4.79□□□□□ -1.64
HDAC3-209ENST00000486618 SYNGR2O43760 224 aa4.79□□□□□ -1.64
HDAC3-209ENST00000486618 SSSCA1O60232 199 aa4.79□□□□□ -1.64
HDAC3-209ENST00000486618 PPYP01298 95 aa4.79□□□□□ -1.64
HDAC3-209ENST00000486618 NPC2P61916 151 aa4.79□□□□□ -1.64
HDAC3-209ENST00000486618 BVES-AS1Q5T3Y7 98 aa4.79□□□□□ -1.64
HDAC3-209ENST00000486618 C1orf134Q5TEV5 83 aa4.79□□□□□ -1.64
HDAC3-209ENST00000486618 Q6ZR54 194 aa4.79□□□□□ -1.64
HDAC3-209ENST00000486618 OR5H2Q8NGV7 314 aa4.79□□□□□ -1.64
HDAC3-209ENST00000486618 DCANP1Q8TF63 244 aa4.79□□□□□ -1.64
HDAC3-209ENST00000486618 TXNL4BQ9NX01 149 aaKnown RBP4.79□□□□□ -1.64
HDAC3-209ENST00000486618 DNAH17Q9UFH2 4485 aa4.78□□□□□ -1.64
HDAC3-209ENST00000486618 IGLV2-18A0A075B6J9 118 aa4.78□□□□□ -1.64
HDAC3-209ENST00000486618 TRAV2A0A0B4J234 112 aa4.78□□□□□ -1.64
HDAC3-209ENST00000486618 MUC21A0A0G2JKD1 596 aa4.78□□□□□ -1.64
HDAC3-209ENST00000486618 SFTA3P0C7M3 94 aa4.78□□□□□ -1.64
HDAC3-209ENST00000486618 COX7CP15954 63 aa4.78□□□□□ -1.64
HDAC3-209ENST00000486618 BRWD1-AS2P59051 145 aa4.78□□□□□ -1.64
HDAC3-209ENST00000486618 DEFB131AP59861 70 aa4.78□□□□□ -1.64
HDAC3-209ENST00000486618 HBBP68871 147 aa4.78□□□□□ -1.64
HDAC3-209ENST00000486618 MRPS36P82909 103 aaKnown RBP4.78□□□□□ -1.64
HDAC3-209ENST00000486618 PMCHL1Q16048 86 aa4.78□□□□□ -1.64
HDAC3-209ENST00000486618 PRNTQ86SH4 94 aa4.78□□□□□ -1.64
HDAC3-209ENST00000486618 TIMM17AQ99595 171 aa4.78□□□□□ -1.64
HDAC3-209ENST00000486618 TMEM243Q9BU79 118 aa4.78□□□□□ -1.64
HDAC3-209ENST00000486618 TMEM14BQ9NUH8 114 aa4.78□□□□□ -1.64
HDAC3-209ENST00000486618 DNAH11Q96DT5 4516 aa4.78□□□□□ -1.64
HDAC3-209ENST00000486618 DMBT1Q9UGM3 2413 aaPredicted RBP4.77□□□□□ -1.65
HDAC3-209ENST00000486618 IGLV5-45A0A087WSX0 123 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 IGHV3-49A0A0A0MS15 119 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 A0A1W2PPM0 123 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 TMEM256-PLSCR3K7ERE1 68 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 CTSGP08311 255 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 SRP19P09132 144 aaKnown RBP4.77□□□□□ -1.65
HDAC3-209ENST00000486618 CXCL1P09341 107 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 NPPCP23582 126 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 LINC00313P59037 77 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 SNRPD3P62318 126 aaKnown RBP4.77□□□□□ -1.65
HDAC3-209ENST00000486618 UBE2BP63146 152 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 EIF4EBP1Q13541 118 aaPredicted RBP4.77□□□□□ -1.65
HDAC3-209ENST00000486618 LAIR2Q6ISS4 152 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 NEXN-AS1Q8NBZ9 246 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 OR5C1Q8NGR4 320 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 OR2T35Q8NGX2 323 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 PMCHL2Q9BQD1 86 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 SMDT1Q9H4I9 107 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 MSRB1Q9NZV6 116 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 F11RQ9Y624 299 aaKnown RBP4.77□□□□□ -1.65
HDAC3-209ENST00000486618 FAT2Q9NYQ8 4349 aa4.77□□□□□ -1.65
HDAC3-209ENST00000486618 IGHV3-74A0A0B4J1X5 117 aa4.76□□□□□ -1.65
HDAC3-209ENST00000486618 TRAV3A0A0B4J244 114 aa4.76□□□□□ -1.65
HDAC3-209ENST00000486618 GRIFINA4D1Z8 144 aa4.76□□□□□ -1.65
HDAC3-209ENST00000486618 K7EIM0 57 aa4.76□□□□□ -1.65
HDAC3-209ENST00000486618 S100A4P26447 101 aaKnown RBP4.76□□□□□ -1.65
HDAC3-209ENST00000486618 WT1-ASQ06250 92 aa4.76□□□□□ -1.65
HDAC3-209ENST00000486618 ZNF818PQ6ZRF7 136 aa4.76□□□□□ -1.65
HDAC3-209ENST00000486618 PPDPFLQ8WWR9 84 aa4.76□□□□□ -1.65
HDAC3-209ENST00000486618 PRELID3AQ96N28 172 aa4.76□□□□□ -1.65
HDAC3-209ENST00000486618 VGLL1Q99990 258 aa4.76□□□□□ -1.65
HDAC3-209ENST00000486618 PYGO2Q9BRQ0 406 aa4.76□□□□□ -1.65
HDAC3-209ENST00000486618 SCRT2Q9NQ03 307 aa4.76□□□□□ -1.65
HDAC3-209ENST00000486618 CELA1Q9UNI1 258 aa4.76□□□□□ -1.65
HDAC3-209ENST00000486618 NACAE9PAV3 2078 aa4.76□□□□□ -1.65
HDAC3-209ENST00000486618 DYNC1H1Q14204 4646 aaKnown RBP4.76□□□□□ -1.65
HDAC3-209ENST00000486618 DNAH2Q9P225 4427 aa4.75□□□□□ -1.65
HDAC3-209ENST00000486618 TRBV24-1A0A075B6N3 115 aa4.75□□□□□ -1.65
HDAC3-209ENST00000486618 NXPH4O95158 308 aa4.75□□□□□ -1.65
HDAC3-209ENST00000486618 HLA-DQA1P01909 254 aa4.75□□□□□ -1.65
HDAC3-209ENST00000486618 GIG44P09565 113 aaPredicted RBP4.75□□□□□ -1.65
HDAC3-209ENST00000486618 SPART-AS1P0CW21 52 aa4.75□□□□□ -1.65
HDAC3-209ENST00000486618 ZNF138P52744 262 aa4.75□□□□□ -1.65
HDAC3-209ENST00000486618 RPL23P62829 140 aaKnown RBP4.75□□□□□ -1.65
HDAC3-209ENST00000486618 KIAA0087Q14695 138 aa4.75□□□□□ -1.65
HDAC3-209ENST00000486618 EBLN2Q6P2I7 272 aa4.75□□□□□ -1.65
HDAC3-209ENST00000486618 LINC00173Q6ZV60 143 aa4.75□□□□□ -1.65
HDAC3-209ENST00000486618 PHF5AQ7RTV0 110 aaKnown RBP4.75□□□□□ -1.65
HDAC3-209ENST00000486618 NKAPP1Q8N9T2 125 aa4.75□□□□□ -1.65
HDAC3-209ENST00000486618 OR8A1Q8NGG7 326 aa4.75□□□□□ -1.65
HDAC3-209ENST00000486618 ZNF414Q96IQ9 312 aa4.75□□□□□ -1.65
HDAC3-209ENST00000486618 C20orf78Q9BR46 151 aa4.75□□□□□ -1.65
HDAC3-209ENST00000486618 SLC35B3Q9H1N7 401 aa4.75□□□□□ -1.65
HDAC3-209ENST00000486618 NDUFA4L2Q9NRX3 87 aa4.75□□□□□ -1.65
HDAC3-209ENST00000486618 TRAV9-2A0A087WT02 112 aa4.74□□□□□ -1.65
HDAC3-209ENST00000486618 RBAKDNA6NC62 111 aa4.74□□□□□ -1.65
HDAC3-209ENST00000486618 LYRM1O43325 122 aa4.74□□□□□ -1.65
HDAC3-209ENST00000486618 PRSS1P07477 247 aa4.74□□□□□ -1.65
HDAC3-209ENST00000486618 CSN1S1P47710 185 aa4.74□□□□□ -1.65
HDAC3-209ENST00000486618 ZNF80P51504 273 aaPredicted RBP4.74□□□□□ -1.65
HDAC3-209ENST00000486618 CXCL6P80162 114 aa4.74□□□□□ -1.65
HDAC3-209ENST00000486618 ZNF345Q14585 488 aa4.74□□□□□ -1.65
HDAC3-209ENST00000486618 ELOBQ15370 118 aa4.74□□□□□ -1.65
HDAC3-209ENST00000486618 C15orf53Q8NAA6 179 aa4.74□□□□□ -1.65
HDAC3-209ENST00000486618 CSNK1G2-AS1Q8NCQ2 148 aa4.74□□□□□ -1.65
HDAC3-209ENST00000486618 C11orf52Q96A22 123 aa4.74□□□□□ -1.65
HDAC3-209ENST00000486618 SCRT1Q9BWW7 348 aa4.74□□□□□ -1.65
HDAC3-209ENST00000486618 TMEM242Q9NWH2 141 aa4.74□□□□□ -1.65
HDAC3-209ENST00000486618 ZNF706Q9Y5V0 76 aaPredicted RBP4.74□□□□□ -1.65
HDAC3-209ENST00000486618 PKD1P98161 4303 aa4.73□□□□□ -1.65
HDAC3-209ENST00000486618 IGHV3-66A0A0C4DH42 116 aa4.73□□□□□ -1.65
HDAC3-209ENST00000486618 TRBV7-7A0A0K0K1E9 115 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms