RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 ODF3Q96PU9 254 aa8.21□□□□□ -1.09
HDAC6-228ENST00000486227 PRO0255Q9UI72 69 aa8.21□□□□□ -1.09
HDAC6-228ENST00000486227 C11orf21Q9P2W6 132 aa8.21□□□□□ -1.09
HDAC6-228ENST00000486227 A0A096LNJ9 63 aa8.21□□□□□ -1.1
HDAC6-228ENST00000486227 UBL5Q9BZL1 73 aa8.21□□□□□ -1.1
HDAC6-228ENST00000486227 CDK2AP2O75956 126 aa8.2□□□□□ -1.1
HDAC6-228ENST00000486227 LINC00643Q86TS7 51 aa8.2□□□□□ -1.1
HDAC6-228ENST00000486227 UBE2BP63146 152 aa8.2□□□□□ -1.1
HDAC6-228ENST00000486227 PRR9Q5T870 116 aa8.2□□□□□ -1.1
HDAC6-228ENST00000486227 C20orf203Q8NBC4 194 aa8.2□□□□□ -1.1
HDAC6-228ENST00000486227 CLEC2BQ92478 149 aa8.2□□□□□ -1.1
HDAC6-228ENST00000486227 CNFNQ9BYD5 112 aa8.2□□□□□ -1.1
HDAC6-228ENST00000486227 TEX49A0A1B0GTD5 131 aa8.2□□□□□ -1.1
HDAC6-228ENST00000486227 SMIM9A6NGZ8 99 aa8.2□□□□□ -1.1
HDAC6-228ENST00000486227 Q6ZTI0 123 aa8.2□□□□□ -1.1
HDAC6-228ENST00000486227 NRACQ8N912 160 aa8.2□□□□□ -1.1
HDAC6-228ENST00000486227 MRPS12O15235 138 aaKnown RBP8.19□□□□□ -1.1
HDAC6-228ENST00000486227 CEMP1Q6PRD7 247 aaPredicted RBP8.19□□□□□ -1.1
HDAC6-228ENST00000486227 IGLV10-54A0A075B6I4 117 aa8.19□□□□□ -1.1
HDAC6-228ENST00000486227 ANKRD17O75179 2603 aaKnown RBP8.18□□□□□ -1.1
HDAC6-228ENST00000486227 MRGPRG-AS1Q2M3A8 158 aa8.18□□□□□ -1.1
HDAC6-228ENST00000486227 IGHV1-58A0A0C4DH39 117 aa8.18□□□□□ -1.1
HDAC6-228ENST00000486227 CAMK2N2Q96S95 79 aa8.18□□□□□ -1.1
HDAC6-228ENST00000486227 TNRC6BQ9UPQ9 1833 aaKnown RBP8.18□□□□□ -1.1
HDAC6-228ENST00000486227 A0A0J9YXY3 114 aa8.18□□□□□ -1.1
HDAC6-228ENST00000486227 EDN2P20800 178 aa8.17□□□□□ -1.1
HDAC6-228ENST00000486227 LINC00482Q8N8I6 264 aa8.17□□□□□ -1.1
HDAC6-228ENST00000486227 SVIPQ8NHG7 77 aa8.17□□□□□ -1.1
HDAC6-228ENST00000486227 RS1O15537 224 aa8.17□□□□□ -1.1
HDAC6-228ENST00000486227 GAS8-AS1O95177 125 aa8.17□□□□□ -1.1
HDAC6-228ENST00000486227 NDUFA7O95182 113 aa8.17□□□□□ -1.1
HDAC6-228ENST00000486227 RPL32P62910 135 aaKnown RBP8.17□□□□□ -1.1
HDAC6-228ENST00000486227 MIAQ16674 131 aa8.17□□□□□ -1.1
HDAC6-228ENST00000486227 FAM222AQ5U5X8 452 aa8.17□□□□□ -1.1
HDAC6-228ENST00000486227 TRBV30A0A0K0K1B3 111 aa8.17□□□□□ -1.1
HDAC6-228ENST00000486227 A0A1B0GX51 115 aa8.17□□□□□ -1.1
HDAC6-228ENST00000486227 COX7A2LO14548 114 aa8.16□□□□□ -1.1
HDAC6-228ENST00000486227 DCANP1Q8TF63 244 aa8.16□□□□□ -1.1
HDAC6-228ENST00000486227 VSIG2Q96IQ7 327 aa8.16□□□□□ -1.1
HDAC6-228ENST00000486227 UQCRQO14949 82 aa8.16□□□□□ -1.1
HDAC6-228ENST00000486227 LYRM9A8MSI8 78 aa8.16□□□□□ -1.1
HDAC6-228ENST00000486227 RNASE3P12724 160 aaKnown RBP8.16□□□□□ -1.1
HDAC6-228ENST00000486227 RBMY1FQ15415 496 aaKnown RBP8.16□□□□□ -1.1
HDAC6-228ENST00000486227 TRAV4A0A0B4J268 109 aa8.15□□□□□ -1.1
HDAC6-228ENST00000486227 TRBV10-1A0A0K0K1A3 114 aa8.15□□□□□ -1.1
HDAC6-228ENST00000486227 H0YGX0 51 aa8.15□□□□□ -1.1
HDAC6-228ENST00000486227 KLK12Q9UKR0 248 aa8.15□□□□□ -1.1
HDAC6-228ENST00000486227 TRIOO75962 3097 aa8.15□□□□□ -1.1
HDAC6-228ENST00000486227 DEFB131BA0A096LNP1 70 aa8.15□□□□□ -1.1
HDAC6-228ENST00000486227 TINCRA0A1B0GVN0 87 aa8.15□□□□□ -1.1
HDAC6-228ENST00000486227 PRM2P04554 102 aa8.15□□□□□ -1.11
HDAC6-228ENST00000486227 MIFP14174 115 aa8.15□□□□□ -1.11
HDAC6-228ENST00000486227 UBE2D1P51668 147 aa8.15□□□□□ -1.11
HDAC6-228ENST00000486227 Q6Q795 121 aa8.15□□□□□ -1.11
HDAC6-228ENST00000486227 DAND5Q8N907 189 aa8.15□□□□□ -1.11
HDAC6-228ENST00000486227 TET2Q6N021 2002 aaPredicted RBP8.15□□□□□ -1.11
HDAC6-228ENST00000486227 IGHV4-4A0A075B6R2 117 aa8.14□□□□□ -1.11
HDAC6-228ENST00000486227 TRIAP1O43715 76 aa8.14□□□□□ -1.11
HDAC6-228ENST00000486227 TMEM223A0PJW6 202 aa8.14□□□□□ -1.11
HDAC6-228ENST00000486227 KLLNB2CW77 178 aa8.14□□□□□ -1.11
HDAC6-228ENST00000486227 ZNF22P17026 224 aaPredicted RBP8.14□□□□□ -1.11
HDAC6-228ENST00000486227 FAM110AQ9BQ89 295 aa8.14□□□□□ -1.11
HDAC6-228ENST00000486227 PROK1P58294 105 aa8.14□□□□□ -1.11
HDAC6-228ENST00000486227 CCDC179H3BU77 68 aa8.14□□□□□ -1.11
HDAC6-228ENST00000486227 CRIP2P52943 208 aaPredicted RBP8.14□□□□□ -1.11
HDAC6-228ENST00000486227 PTPRBP23467 1997 aa8.14□□□□□ -1.11
HDAC6-228ENST00000486227 M0QY20 66 aa8.13□□□□□ -1.11
HDAC6-228ENST00000486227 RPL18AQ02543 176 aaKnown RBP8.13□□□□□ -1.11
HDAC6-228ENST00000486227 WFDC10AQ9H1F0 79 aa8.13□□□□□ -1.11
HDAC6-228ENST00000486227 ORMDL1Q9P0S3 153 aa8.13□□□□□ -1.11
HDAC6-228ENST00000486227 IGKV3D-7A0A0C4DH55 119 aa8.13□□□□□ -1.11
HDAC6-228ENST00000486227 COX8CQ7Z4L0 72 aa8.13□□□□□ -1.11
HDAC6-228ENST00000486227 NFE4Q86UQ8 179 aa8.13□□□□□ -1.11
HDAC6-228ENST00000486227 UBE2D3P61077 147 aa8.12□□□□□ -1.11
HDAC6-228ENST00000486227 UBE2D2P62837 147 aa8.12□□□□□ -1.11
HDAC6-228ENST00000486227 IMUPQ9GZP8 106 aa8.12□□□□□ -1.11
HDAC6-228ENST00000486227 HAMPP81172 84 aa8.12□□□□□ -1.11
HDAC6-228ENST00000486227 SND1-IT1Q9HBX3 110 aa8.12□□□□□ -1.11
HDAC6-228ENST00000486227 OXLD1Q5BKU9 147 aa8.11□□□□□ -1.11
HDAC6-228ENST00000486227 C3orf22Q8N5N4 141 aa8.11□□□□□ -1.11
HDAC6-228ENST00000486227 NDUFA1O15239 70 aa8.1□□□□□ -1.11
HDAC6-228ENST00000486227 LINC00467Q9BRT7 94 aa8.1□□□□□ -1.11
HDAC6-228ENST00000486227 TIRAPP58753 221 aa8.1□□□□□ -1.11
HDAC6-228ENST00000486227 COX7B2Q8TF08 81 aa8.1□□□□□ -1.11
HDAC6-228ENST00000486227 TRBV27A0A0K0K1C4 114 aa8.1□□□□□ -1.11
HDAC6-228ENST00000486227 CDH23Q9H251 3354 aa8.1□□□□□ -1.11
HDAC6-228ENST00000486227 IGLV4-3A0A075B6K6 122 aa8.09□□□□□ -1.11
HDAC6-228ENST00000486227 TRBV6-5A0A0K0K1A5 114 aa8.09□□□□□ -1.11
HDAC6-228ENST00000486227 KIR2DL5BQ8NHK3 375 aa8.08□□□□□ -1.12
HDAC6-228ENST00000486227 TRAV10A0A0B4J240 114 aa8.08□□□□□ -1.12
HDAC6-228ENST00000486227 CDIP1Q9H305 208 aa8.08□□□□□ -1.12
HDAC6-228ENST00000486227 XIRP2A4UGR9 3374 aa8.08□□□□□ -1.12
HDAC6-228ENST00000486227 PRB2P02812 416 aaPredicted RBP8.08□□□□□ -1.12
HDAC6-228ENST00000486227 CRYGDP07320 174 aa8.08□□□□□ -1.12
HDAC6-228ENST00000486227 C14orf177Q52M58 125 aa8.08□□□□□ -1.12
HDAC6-228ENST00000486227 C5orf47Q569G3 176 aa8.08□□□□□ -1.12
HDAC6-228ENST00000486227 POLR2KP53803 58 aaKnown RBP8.08□□□□□ -1.12
HDAC6-228ENST00000486227 IGLV2-18A0A075B6J9 118 aa8.07□□□□□ -1.12
HDAC6-228ENST00000486227 FAM240AA0A1B0GVK7 77 aa8.07□□□□□ -1.12
HDAC6-228ENST00000486227 ETDCA0A1B0GVM5 59 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 131.4 ms