RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 BAGE3Q86Y29 109 aa11.14□□□□□ -0.63
TRIM54-203ENST00000485306 HIST1H2BHQ93079 126 aa11.14□□□□□ -0.63
TRIM54-203ENST00000485306 CHCHD1Q96BP2 118 aaKnown RBP11.14□□□□□ -0.63
TRIM54-203ENST00000485306 HIST1H2BNQ99877 126 aa11.14□□□□□ -0.63
TRIM54-203ENST00000485306 HIST1H2BMQ99879 126 aa11.14□□□□□ -0.63
TRIM54-203ENST00000485306 CHCHD5Q9BSY4 110 aa11.14□□□□□ -0.63
TRIM54-203ENST00000485306 AP5S1Q9NUS5 200 aa11.14□□□□□ -0.63
TRIM54-203ENST00000485306 RYR1P21817 5038 aa11.13□□□□□ -0.63
TRIM54-203ENST00000485306 LINC01549A6NIU2 74 aa11.13□□□□□ -0.63
TRIM54-203ENST00000485306 UBE2L6O14933 153 aa11.13□□□□□ -0.63
TRIM54-203ENST00000485306 NIT1Q86X76 327 aa11.13□□□□□ -0.63
TRIM54-203ENST00000485306 C20orf203Q8NBC4 194 aa11.13□□□□□ -0.63
TRIM54-203ENST00000485306 Q9HAA7 133 aa11.13□□□□□ -0.63
TRIM54-203ENST00000485306 TM2D2Q9BX73 214 aa11.12□□□□□ -0.63
TRIM54-203ENST00000485306 PCLOQ9Y6V0 5065 aa11.12□□□□□ -0.63
TRIM54-203ENST00000485306 Q8N1X5 172 aa11.11□□□□□ -0.63
TRIM54-203ENST00000485306 DEFB104AQ8WTQ1 72 aa11.11□□□□□ -0.63
TRIM54-203ENST00000485306 LRP1BQ9NZR2 4599 aa11.11□□□□□ -0.63
TRIM54-203ENST00000485306 TRAV8-3A0A0A6YYJ7 113 aa11.1□□□□□ -0.63
TRIM54-203ENST00000485306 TMEM262E9PQX1 116 aa11.1□□□□□ -0.63
TRIM54-203ENST00000485306 ZNF25P17030 456 aaPredicted RBP11.1□□□□□ -0.63
TRIM54-203ENST00000485306 FUSP35637 526 aaKnown RBP eCLIP11.1□□□□□ -0.63
TRIM54-203ENST00000485306 RNASEKQ6P5S7 137 aaKnown RBP11.1□□□□□ -0.63
TRIM54-203ENST00000485306 Q8N3U1 123 aa11.1□□□□□ -0.63
TRIM54-203ENST00000485306 URB1-AS1Q96HZ7 61 aa11.1□□□□□ -0.63
TRIM54-203ENST00000485306 A0A087WX48 190 aa11.09□□□□□ -0.63
TRIM54-203ENST00000485306 A0A1B0GUV1 79 aa11.09□□□□□ -0.63
TRIM54-203ENST00000485306 SMCPP49901 116 aaPredicted RBP11.09□□□□□ -0.63
TRIM54-203ENST00000485306 GAGE6Q13070 117 aa11.09□□□□□ -0.63
TRIM54-203ENST00000485306 MRPL52Q86TS9 123 aaKnown RBP11.09□□□□□ -0.63
TRIM54-203ENST00000485306 TIMM21Q9BVV7 248 aa11.09□□□□□ -0.63
TRIM54-203ENST00000485306 KRTAP4-5Q9BYR2 181 aa11.09□□□□□ -0.63
TRIM54-203ENST00000485306 CYSLTR1Q9Y271 337 aa11.09□□□□□ -0.63
TRIM54-203ENST00000485306 DNAH5Q8TE73 4624 aa11.09□□□□□ -0.63
TRIM54-203ENST00000485306 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.08□□□□□ -0.64
TRIM54-203ENST00000485306 IGKV2-29A2NJV5 120 aaPredicted RBP11.08□□□□□ -0.64
TRIM54-203ENST00000485306 COA6Q5JTJ3 125 aaKnown RBP11.08□□□□□ -0.64
TRIM54-203ENST00000485306 AMMECR1LQ6DCA0 310 aa11.08□□□□□ -0.64
TRIM54-203ENST00000485306 NTN5Q8WTR8 489 aaPredicted RBP11.08□□□□□ -0.64
TRIM54-203ENST00000485306 CSDC2Q9Y534 153 aaKnown RBP11.08□□□□□ -0.64
TRIM54-203ENST00000485306 LRCOL1A6NCL2 159 aa11.07□□□□□ -0.64
TRIM54-203ENST00000485306 HSBP1O75506 76 aa11.07□□□□□ -0.64
TRIM54-203ENST00000485306 SERF1AO75920 110 aa11.07□□□□□ -0.64
TRIM54-203ENST00000485306 FGF6P10767 208 aa11.07□□□□□ -0.64
TRIM54-203ENST00000485306 GCSHP23434 173 aa11.07□□□□□ -0.64
TRIM54-203ENST00000485306 C2orf66Q6UXQ4 117 aa11.07□□□□□ -0.64
TRIM54-203ENST00000485306 TMEM101Q96IK0 257 aa11.07□□□□□ -0.64
TRIM54-203ENST00000485306 SPANXA1Q9NS26 97 aa11.07□□□□□ -0.64
TRIM54-203ENST00000485306 PYGO1Q9Y3Y4 419 aa11.07□□□□□ -0.64
TRIM54-203ENST00000485306 IGLV5-52A0A0A0MRZ9 124 aa11.06□□□□□ -0.64
TRIM54-203ENST00000485306 HBDP02042 147 aa11.06□□□□□ -0.64
TRIM54-203ENST00000485306 NPSP0C0P6 89 aa11.06□□□□□ -0.64
TRIM54-203ENST00000485306 RBX1P62877 108 aa11.06□□□□□ -0.64
TRIM54-203ENST00000485306 TOMM6Q96B49 74 aa11.06□□□□□ -0.64
TRIM54-203ENST00000485306 UBE2D4Q9Y2X8 147 aa11.06□□□□□ -0.64
TRIM54-203ENST00000485306 COX11Q9Y6N1 276 aa11.06□□□□□ -0.64
TRIM54-203ENST00000485306 MPV17L2Q567V2 206 aa11.05□□□□□ -0.64
TRIM54-203ENST00000485306 DGAT2L7PQ6IED9 249 aa11.05□□□□□ -0.64
TRIM54-203ENST00000485306 Q8N814 137 aa11.05□□□□□ -0.64
TRIM54-203ENST00000485306 RMI2Q96E14 147 aa11.05□□□□□ -0.64
TRIM54-203ENST00000485306 HSPG2P98160 4391 aa11.05□□□□□ -0.64
TRIM54-203ENST00000485306 KRTAP10-1P60331 282 aa11.04□□□□□ -0.64
TRIM54-203ENST00000485306 RPL39P62891 51 aaKnown RBP11.04□□□□□ -0.64
TRIM54-203ENST00000485306 OR5A1Q8NGJ0 315 aa11.04□□□□□ -0.64
TRIM54-203ENST00000485306 NDUFA6P56556 154 aa11.03□□□□□ -0.64
TRIM54-203ENST00000485306 LINC00310P59036 64 aa11.03□□□□□ -0.64
TRIM54-203ENST00000485306 MRPS36P82909 103 aaKnown RBP11.03□□□□□ -0.64
TRIM54-203ENST00000485306 TMEM141Q96I45 108 aa11.03□□□□□ -0.64
TRIM54-203ENST00000485306 TIMM17AQ99595 171 aa11.03□□□□□ -0.64
TRIM54-203ENST00000485306 PAPPA-AS1Q5QFB9 102 aa11.02□□□□□ -0.65
TRIM54-203ENST00000485306 ERASQ7Z444 233 aa11.02□□□□□ -0.65
TRIM54-203ENST00000485306 Q8N976 141 aa11.02□□□□□ -0.65
TRIM54-203ENST00000485306 A0A096LNJ9 63 aa11.01□□□□□ -0.65
TRIM54-203ENST00000485306 IGIPA6NJ69 53 aa11.01□□□□□ -0.65
TRIM54-203ENST00000485306 S100A6P06703 90 aa11.01□□□□□ -0.65
TRIM54-203ENST00000485306 XGP55808 180 aa11.01□□□□□ -0.65
TRIM54-203ENST00000485306 PDZD11Q5EBL8 140 aa11.01□□□□□ -0.65
TRIM54-203ENST00000485306 SCGB3A1Q96QR1 104 aa11.01□□□□□ -0.65
TRIM54-203ENST00000485306 CDC42SE2Q9NRR3 84 aa11.01□□□□□ -0.65
TRIM54-203ENST00000485306 KLK12Q9UKR0 248 aa11.01□□□□□ -0.65
TRIM54-203ENST00000485306 IGLV4-60A0A075B6I1 120 aa11□□□□□ -0.65
TRIM54-203ENST00000485306 EPM2AB3EWF7 344 aa11□□□□□ -0.65
TRIM54-203ENST00000485306 ATP5LO75964 103 aa11□□□□□ -0.65
TRIM54-203ENST00000485306 ANGP03950 147 aaKnown RBP11□□□□□ -0.65
TRIM54-203ENST00000485306 ZNF664Q8N3J9 261 aa11□□□□□ -0.65
TRIM54-203ENST00000485306 PACRGQ96M98 296 aaPredicted RBP11□□□□□ -0.65
TRIM54-203ENST00000485306 LCE2BO14633 110 aa10.99□□□□□ -0.65
TRIM54-203ENST00000485306 NUPR1O60356 82 aa10.99□□□□□ -0.65
TRIM54-203ENST00000485306 PMCHL1Q16048 86 aa10.99□□□□□ -0.65
TRIM54-203ENST00000485306 Q6ZN92 141 aa10.99□□□□□ -0.65
TRIM54-203ENST00000485306 PRR34Q9NV39 138 aa10.99□□□□□ -0.65
TRIM54-203ENST00000485306 APOBP04114 4563 aaKnown RBP10.99□□□□□ -0.65
TRIM54-203ENST00000485306 ABCA13Q86UQ4 5058 aa10.99□□□□□ -0.65
TRIM54-203ENST00000485306 IGKV2D-24A0A075B6R9 120 aa10.98□□□□□ -0.65
TRIM54-203ENST00000485306 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.98□□□□□ -0.65
TRIM54-203ENST00000485306 CRPP02741 224 aa10.98□□□□□ -0.65
TRIM54-203ENST00000485306 FAM19A2Q8N3H0 131 aa10.98□□□□□ -0.65
TRIM54-203ENST00000485306 UBE2WQ96B02 151 aa10.98□□□□□ -0.65
TRIM54-203ENST00000485306 IGLV4-3A0A075B6K6 122 aa10.97□□□□□ -0.65
TRIM54-203ENST00000485306 CCL25O15444 150 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms