RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 TMEM2Q9UHN6 1383 aa-0.36□□□□□ -2.47
VPS50-216ENST00000484954 PHIPQ8WWQ0 1821 aa-0.36□□□□□ -2.47
VPS50-216ENST00000484954 MUC22E2RYF6 1773 aaPredicted RBP-0.37□□□□□ -2.47
VPS50-216ENST00000484954 PCNX1Q96RV3 2341 aa-0.37□□□□□ -2.47
VPS50-216ENST00000484954 DNAH2Q9P225 4427 aa-0.37□□□□□ -2.47
VPS50-216ENST00000484954 URB1O60287 2271 aaKnown RBP-0.37□□□□□ -2.47
VPS50-216ENST00000484954 APOC4-APOC2K7ER74 178 aa-0.37□□□□□ -2.47
VPS50-216ENST00000484954 PIN1P1O15428 100 aa-0.37□□□□□ -2.47
VPS50-216ENST00000484954 BCE1O60756 84 aa-0.37□□□□□ -2.47
VPS50-216ENST00000484954 NDUFB6O95139 128 aa-0.37□□□□□ -2.47
VPS50-216ENST00000484954 IFNA17P01571 189 aa-0.37□□□□□ -2.47
VPS50-216ENST00000484954 SPRR2BP35325 72 aa-0.37□□□□□ -2.47
VPS50-216ENST00000484954 RPS25P62851 125 aaKnown RBP-0.37□□□□□ -2.47
VPS50-216ENST00000484954 WFDC2Q14508 124 aa-0.37□□□□□ -2.47
VPS50-216ENST00000484954 ALX1Q15699 326 aa-0.37□□□□□ -2.47
VPS50-216ENST00000484954 RPL7L1Q6DKI1 246 aaKnown RBP-0.37□□□□□ -2.47
VPS50-216ENST00000484954 BAGE3Q86Y29 109 aa-0.37□□□□□ -2.47
VPS50-216ENST00000484954 PSMG3Q9BT73 122 aaPredicted RBP-0.37□□□□□ -2.47
VPS50-216ENST00000484954 PRO0255Q9UI72 69 aa-0.37□□□□□ -2.47
VPS50-216ENST00000484954 FRYQ5TBA9 3013 aa-0.37□□□□□ -2.47
VPS50-216ENST00000484954 DNAH9Q9NYC9 4486 aa-0.37□□□□□ -2.47
VPS50-216ENST00000484954 DMXL2Q8TDJ6 3036 aa-0.38□□□□□ -2.47
VPS50-216ENST00000484954 SRCAPQ6ZRS2 3230 aa-0.38□□□□□ -2.47
VPS50-216ENST00000484954 MUC3AQ02505 3323 aa-0.38□□□□□ -2.47
VPS50-216ENST00000484954 CSMD2Q7Z408 3487 aa-0.38□□□□□ -2.47
VPS50-216ENST00000484954 PLCE1Q9P212 2302 aa-0.38□□□□□ -2.47
VPS50-216ENST00000484954 M0R3E3 92 aa-0.38□□□□□ -2.47
VPS50-216ENST00000484954 SIX6O95475 246 aa-0.38□□□□□ -2.47
VPS50-216ENST00000484954 PIPP12273 146 aaPredicted RBP-0.38□□□□□ -2.47
VPS50-216ENST00000484954 TSTD1Q8NFU3 115 aa-0.38□□□□□ -2.47
VPS50-216ENST00000484954 MAFIPQ8WZ33 124 aa-0.38□□□□□ -2.47
VPS50-216ENST00000484954 ANP32BQ92688 251 aaKnown RBP-0.38□□□□□ -2.47
VPS50-216ENST00000484954 SPTSSAQ969W0 71 aa-0.38□□□□□ -2.47
VPS50-216ENST00000484954 SPEGQ15772 3267 aa-0.38□□□□□ -2.47
VPS50-216ENST00000484954 VPS13BQ7Z7G8 4022 aa-0.38□□□□□ -2.47
VPS50-216ENST00000484954 TLN2Q9Y4G6 2542 aa-0.38□□□□□ -2.47
VPS50-216ENST00000484954 NRXN2Q9P2S2 1712 aa-0.38□□□□□ -2.47
VPS50-216ENST00000484954 TRIOO75962 3097 aa-0.39□□□□□ -2.47
VPS50-216ENST00000484954 PLECQ15149 4684 aaKnown RBP-0.39□□□□□ -2.47
VPS50-216ENST00000484954 CDK5RAP2Q96SN8 1893 aa-0.39□□□□□ -2.47
VPS50-216ENST00000484954 EYSQ5T1H1 3165 aa-0.39□□□□□ -2.47
VPS50-216ENST00000484954 FAM92AA1XBS5 289 aa-0.39□□□□□ -2.47
VPS50-216ENST00000484954 HCG22E2RYF7 251 aa-0.39□□□□□ -2.47
VPS50-216ENST00000484954 SNCGO76070 127 aa-0.39□□□□□ -2.47
VPS50-216ENST00000484954 SPRR1AP35321 89 aa-0.39□□□□□ -2.47
VPS50-216ENST00000484954 GUCA1AP43080 201 aaPredicted RBP-0.39□□□□□ -2.47
VPS50-216ENST00000484954 CCL18P55774 89 aa-0.39□□□□□ -2.47
VPS50-216ENST00000484954 COPZ1P61923 177 aa-0.39□□□□□ -2.47
VPS50-216ENST00000484954 DEFB109BQ30KR1 87 aa-0.39□□□□□ -2.47
VPS50-216ENST00000484954 SMIM21Q3B7S5 101 aa-0.39□□□□□ -2.47
VPS50-216ENST00000484954 Q5VSD8 79 aa-0.39□□□□□ -2.47
VPS50-216ENST00000484954 CFAP126Q5VTH2 177 aa-0.39□□□□□ -2.47
VPS50-216ENST00000484954 SCN3BQ9NY72 215 aa-0.39□□□□□ -2.47
VPS50-216ENST00000484954 CMYA5Q8N3K9 4069 aa-0.39□□□□□ -2.47
VPS50-216ENST00000484954 M0R135 149 aa-0.4□□□□□ -2.47
VPS50-216ENST00000484954 HIST1H1DP16402 221 aaKnown RBP-0.4□□□□□ -2.47
VPS50-216ENST00000484954 HAMPP81172 84 aa-0.4□□□□□ -2.47
VPS50-216ENST00000484954 KRTAP6-2Q3LI66 62 aa-0.4□□□□□ -2.47
VPS50-216ENST00000484954 KCNRGQ8N5I3 272 aa-0.4□□□□□ -2.47
VPS50-216ENST00000484954 LZICQ8WZA0 190 aa-0.4□□□□□ -2.47
VPS50-216ENST00000484954 SEC11CQ9BY50 192 aa-0.4□□□□□ -2.47
VPS50-216ENST00000484954 AGPAT4-IT1Q9H0P7 198 aa-0.4□□□□□ -2.47
VPS50-216ENST00000484954 LINC00472Q9H8W2 130 aa-0.4□□□□□ -2.47
VPS50-216ENST00000484954 COPZ2Q9P299 210 aa-0.4□□□□□ -2.47
VPS50-216ENST00000484954 FHAD1B1AJZ9 1412 aa-0.4□□□□□ -2.47
VPS50-216ENST00000484954 CASKIN1Q8WXD9 1431 aa-0.4□□□□□ -2.47
VPS50-216ENST00000484954 LOC400499M0QZD8 3231 aa-0.4□□□□□ -2.47
VPS50-216ENST00000484954 IFT140Q96RY7 1462 aa-0.41□□□□□ -2.47
VPS50-216ENST00000484954 USF3Q68DE3 2245 aa-0.41□□□□□ -2.47
VPS50-216ENST00000484954 CHD7Q9P2D1 2997 aa-0.41□□□□□ -2.47
VPS50-216ENST00000484954 SPAARA0A1B0GVQ0 90 aa-0.41□□□□□ -2.48
VPS50-216ENST00000484954 PPP1R17O96001 155 aa-0.41□□□□□ -2.48
VPS50-216ENST00000484954 RBM3P98179 157 aaKnown RBP-0.41□□□□□ -2.48
VPS50-216ENST00000484954 LSM10Q969L4 123 aaKnown RBP-0.41□□□□□ -2.48
VPS50-216ENST00000484954 TMEM191AQ9H0A3 160 aa-0.41□□□□□ -2.48
VPS50-216ENST00000484954 TPT1P8Q9HAU6 139 aa-0.41□□□□□ -2.48
VPS50-216ENST00000484954 SPG11Q96JI7 2443 aa-0.41□□□□□ -2.48
VPS50-216ENST00000484954 DAPK1P53355 1430 aa-0.41□□□□□ -2.48
VPS50-216ENST00000484954 APOBP04114 4563 aaKnown RBP-0.41□□□□□ -2.48
VPS50-216ENST00000484954 DYNC1H1Q14204 4646 aaKnown RBP-0.41□□□□□ -2.48
VPS50-216ENST00000484954 LAMC1P11047 1609 aa-0.42□□□□□ -2.48
VPS50-216ENST00000484954 MYH13Q9UKX3 1938 aa-0.42□□□□□ -2.48
VPS50-216ENST00000484954 SACSQ9NZJ4 4579 aa-0.42□□□□□ -2.48
VPS50-216ENST00000484954 CFAP54Q96N23 3096 aa-0.42□□□□□ -2.48
VPS50-216ENST00000484954 TRAV22A0A0B4J277 110 aa-0.42□□□□□ -2.48
VPS50-216ENST00000484954 I3L2K1 104 aa-0.42□□□□□ -2.48
VPS50-216ENST00000484954 SPAG11BQ08648 103 aa-0.42□□□□□ -2.48
VPS50-216ENST00000484954 Q8IZM0 81 aa-0.42□□□□□ -2.48
VPS50-216ENST00000484954 Q8N8P6 123 aa-0.42□□□□□ -2.48
VPS50-216ENST00000484954 NPVFQ9HCQ7 196 aa-0.42□□□□□ -2.48
VPS50-216ENST00000484954 ZNF518AQ6AHZ1 1483 aa-0.42□□□□□ -2.48
VPS50-216ENST00000484954 MTORP42345 2549 aa-0.42□□□□□ -2.48
VPS50-216ENST00000484954 FREM2Q5SZK8 3169 aa-0.43□□□□□ -2.48
VPS50-216ENST00000484954 C5orf42Q9H799 3197 aa-0.43□□□□□ -2.48
VPS50-216ENST00000484954 ZFHX3Q15911 3703 aa-0.43□□□□□ -2.48
VPS50-216ENST00000484954 SMIM6P0DI80 62 aa-0.43□□□□□ -2.48
VPS50-216ENST00000484954 SPRR2EP22531 72 aa-0.43□□□□□ -2.48
VPS50-216ENST00000484954 SPRR2AP35326 72 aa-0.43□□□□□ -2.48
VPS50-216ENST00000484954 SMCO1Q147U7 214 aa-0.43□□□□□ -2.48
VPS50-216ENST00000484954 C10orf128Q5T292 105 aa-0.43□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms