RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CNEP1R1Q8N9A8 125 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 BAALCQ8WXS3 180 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 DEFB127Q9H1M4 99 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 EDA2RQ9HAV5 297 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 FRYQ5TBA9 3013 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 MED12LQ86YW9 2145 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 CEP295Q9C0D2 2601 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 FREM2Q5SZK8 3169 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 ZZEF1O43149 2961 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 TRBV7-1A0A0A6YYK4 115 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 IGHV1-18A0A0C4DH31 117 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 TRBV6-5A0A0K0K1A5 114 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 FAM236AA0A1B0GUQ0 79 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 FAM236BA0A1B0GV22 79 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 LST1O00453 97 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 MRPS12O15235 138 aaKnown RBP3.5□□□□□ -1.85
USP40-213ENST00000483216 DNAL4O96015 105 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 IGHV1-8P0DP01 117 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 CNTFRP26992 372 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 SERP2Q8N6R1 65 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 LY6G5BQ8NDX9 201 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 TMEM263Q8WUH6 116 aaKnown RBP3.5□□□□□ -1.85
USP40-213ENST00000483216 ODF3Q96PU9 254 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 SLC25A15Q9Y619 301 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 ICOSQ9Y6W8 199 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 TANC2Q9HCD6 1990 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 AKAP13Q12802 2813 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 URB1O60287 2271 aaKnown RBP3.5□□□□□ -1.85
USP40-213ENST00000483216 CHD8Q9HCK8 2581 aa3.5□□□□□ -1.85
USP40-213ENST00000483216 DSPP15924 2871 aaKnown RBP3.49□□□□□ -1.85
USP40-213ENST00000483216 PTPRBP23467 1997 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 EPG5Q9HCE0 2579 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 TRAV13-2A0A0B4J235 113 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 TRAV13-1A0A0B4J241 112 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 TRBV27A0A0K0K1C4 114 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 TRBV10-3A0A0K0K1G6 114 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 hADV29S1A0JD25 119 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 H0YGX0 51 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 BUB1B-PAK6H3BSN5 160 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 CRYGDP07320 174 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 ZNF22P17026 224 aaPredicted RBP3.49□□□□□ -1.85
USP40-213ENST00000483216 RPL18AQ02543 176 aaKnown RBP3.49□□□□□ -1.85
USP40-213ENST00000483216 DUX4L9Q6RFH8 374 aaPredicted RBP3.49□□□□□ -1.85
USP40-213ENST00000483216 FAM19A5Q7Z5A7 132 aaPredicted RBP3.49□□□□□ -1.85
USP40-213ENST00000483216 C5orf38Q86SI9 138 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 LINC01587Q99440 93 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 CCL13Q99616 98 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 TIMM21Q9BVV7 248 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 PRORYQ9H606 182 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 PRO0628Q9UI54 55 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 NBEAQ8NFP9 2946 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 ESPL1Q14674 2120 aa3.49□□□□□ -1.85
USP40-213ENST00000483216 KMT2BQ9UMN6 2715 aaPredicted RBP3.49□□□□□ -1.85
USP40-213ENST00000483216 CACNA1GO43497 2377 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 TEX49A0A1B0GTD5 131 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 IGIPA6NJ69 53 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 SMKR1H3BMG3 65 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 K7EIM0 57 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 M0R1B8 84 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 IGHV1-46P01743 117 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 IGHG2P01859 326 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 LINC00694P0DN24 101 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 NPC2P61916 151 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 MIAQ16674 131 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 KLK9Q2XQG4 91 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 MINOS1Q5TGZ0 78 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 FDCSPQ8NFU4 85 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 LEAP2Q969E1 77 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 EEF1AKMT3Q96AZ1 226 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 LINC00527Q9UJ94 153 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 KLK9Q9UKQ9 250 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 TP53TG1Q9Y2A0 90 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 MINOS1-NBL1R4GNA1 71 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 ASPMQ8IZT6 3477 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 CACNA1BQ00975 2339 aa3.48□□□□□ -1.85
USP40-213ENST00000483216 ANKRD11Q6UB99 2663 aaPredicted RBP3.47□□□□□ -1.85
USP40-213ENST00000483216 CFAP47Q6ZTR5 3102 aa3.47□□□□□ -1.85
USP40-213ENST00000483216 IGLV11-55A0A075B6I3 123 aa3.47□□□□□ -1.85
USP40-213ENST00000483216 IGKV2-40A0A087WW87 121 aaPredicted RBP3.47□□□□□ -1.85
USP40-213ENST00000483216 IGHV1-58A0A0C4DH39 117 aa3.47□□□□□ -1.85
USP40-213ENST00000483216 TMEM223A0PJW6 202 aa3.47□□□□□ -1.85
USP40-213ENST00000483216 JMJD7-PLA2G4BH0Y9G9 81 aa3.47□□□□□ -1.85
USP40-213ENST00000483216 I3L3M4 83 aa3.47□□□□□ -1.85
USP40-213ENST00000483216 M0R1W7 72 aa3.47□□□□□ -1.85
USP40-213ENST00000483216 COX7A2LO14548 114 aa3.47□□□□□ -1.85
USP40-213ENST00000483216 IGKV2D-40P01614 121 aaPredicted RBP3.47□□□□□ -1.85
USP40-213ENST00000483216 PSMB8P28062 276 aa3.47□□□□□ -1.85
USP40-213ENST00000483216 DEFB109BQ30KR1 87 aa3.47□□□□□ -1.85
USP40-213ENST00000483216 SDIM1Q6ZPB5 146 aa3.47□□□□□ -1.85
USP40-213ENST00000483216 CAMK2N1Q7Z7J9 78 aa3.47□□□□□ -1.85
USP40-213ENST00000483216 MUSTN1Q8IVN3 82 aa3.47□□□□□ -1.85
USP40-213ENST00000483216 TMEM61Q8N0U2 210 aa3.47□□□□□ -1.85
USP40-213ENST00000483216 MAP1BP46821 2468 aaKnown RBP3.47□□□□□ -1.85
USP40-213ENST00000483216 USF3Q68DE3 2245 aa3.47□□□□□ -1.85
USP40-213ENST00000483216 ACACAQ13085 2346 aa3.47□□□□□ -1.85
USP40-213ENST00000483216 TRAV12-2A0A075B6T6 113 aa3.46□□□□□ -1.86
USP40-213ENST00000483216 TRAV26-2A0A0B4J265 109 aa3.46□□□□□ -1.86
USP40-213ENST00000483216 TINCRA0A1B0GVN0 87 aa3.46□□□□□ -1.86
USP40-213ENST00000483216 FAM223BA6NKX1 122 aa3.46□□□□□ -1.86
USP40-213ENST00000483216 F5H768 121 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms