RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 OR10D4PQ8NGN7 298 aa5.65□□□□□ -1.5
USP4-210ENST00000483212 IFI27L1Q96BM0 104 aa5.65□□□□□ -1.5
USP4-210ENST00000483212 TGP01266 2768 aa5.65□□□□□ -1.51
USP4-210ENST00000483212 IGLV4-3A0A075B6K6 122 aa5.64□□□□□ -1.51
USP4-210ENST00000483212 NUPR2A6NF83 97 aa5.64□□□□□ -1.51
USP4-210ENST00000483212 ATP5LO75964 103 aa5.64□□□□□ -1.51
USP4-210ENST00000483212 NPSP0C0P6 89 aa5.64□□□□□ -1.51
USP4-210ENST00000483212 FGF6P10767 208 aa5.64□□□□□ -1.51
USP4-210ENST00000483212 TMEM141Q96I45 108 aa5.64□□□□□ -1.51
USP4-210ENST00000483212 SCGB3A1Q96QR1 104 aa5.64□□□□□ -1.51
USP4-210ENST00000483212 OPRPNQ99935 248 aaPredicted RBP5.64□□□□□ -1.51
USP4-210ENST00000483212 SPANXA1Q9NS26 97 aa5.64□□□□□ -1.51
USP4-210ENST00000483212 HSPB8Q9UJY1 196 aa5.64□□□□□ -1.51
USP4-210ENST00000483212 CSDC2Q9Y534 153 aaKnown RBP5.64□□□□□ -1.51
USP4-210ENST00000483212 SYS1-DBNDD2H3BUS1 97 aa5.63□□□□□ -1.51
USP4-210ENST00000483212 MRPS36P82909 103 aaKnown RBP5.63□□□□□ -1.51
USP4-210ENST00000483212 GAGE6Q13070 117 aa5.63□□□□□ -1.51
USP4-210ENST00000483212 Q6ZUT4 128 aa5.63□□□□□ -1.51
USP4-210ENST00000483212 BAALCQ8WXS3 180 aa5.63□□□□□ -1.51
USP4-210ENST00000483212 CHCHD5Q9BSY4 110 aa5.63□□□□□ -1.51
USP4-210ENST00000483212 LINC00588Q9Y4M8 146 aa5.63□□□□□ -1.51
USP4-210ENST00000483212 IGLV4-60A0A075B6I1 120 aa5.62□□□□□ -1.51
USP4-210ENST00000483212 TRAV12-1A0A0B4J245 112 aa5.62□□□□□ -1.51
USP4-210ENST00000483212 A0A1B0GUV1 79 aa5.62□□□□□ -1.51
USP4-210ENST00000483212 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.62□□□□□ -1.51
USP4-210ENST00000483212 ZNF25P17030 456 aaPredicted RBP5.62□□□□□ -1.51
USP4-210ENST00000483212 TCTAP57738 103 aa5.62□□□□□ -1.51
USP4-210ENST00000483212 KRTDAPP60985 99 aa5.62□□□□□ -1.51
USP4-210ENST00000483212 RBX1P62877 108 aa5.62□□□□□ -1.51
USP4-210ENST00000483212 MPV17L2Q567V2 206 aa5.62□□□□□ -1.51
USP4-210ENST00000483212 ZC2HC1BQ5TFG8 222 aa5.62□□□□□ -1.51
USP4-210ENST00000483212 WFDC10BQ8IUB3 73 aa5.62□□□□□ -1.51
USP4-210ENST00000483212 MUC7Q8TAX7 377 aa5.62□□□□□ -1.51
USP4-210ENST00000483212 WWC2-AS2Q96NR7 200 aa5.62□□□□□ -1.51
USP4-210ENST00000483212 AMELXQ99217 191 aa5.62□□□□□ -1.51
USP4-210ENST00000483212 UPK3BQ9BT76 320 aa5.62□□□□□ -1.51
USP4-210ENST00000483212 CDC42SE2Q9NRR3 84 aa5.62□□□□□ -1.51
USP4-210ENST00000483212 KLK5Q9Y337 293 aaPredicted RBP5.62□□□□□ -1.51
USP4-210ENST00000483212 MRPS16Q9Y3D3 137 aaKnown RBP5.62□□□□□ -1.51
USP4-210ENST00000483212 UBE2L6O14933 153 aa5.61□□□□□ -1.51
USP4-210ENST00000483212 ODF1Q14990 250 aa5.61□□□□□ -1.51
USP4-210ENST00000483212 JOSD1Q15040 202 aaPredicted RBP5.61□□□□□ -1.51
USP4-210ENST00000483212 PYY3Q5JQD4 70 aa5.61□□□□□ -1.51
USP4-210ENST00000483212 LINC01545Q5VT33 79 aa5.61□□□□□ -1.51
USP4-210ENST00000483212 ZFAND6Q6FIF0 208 aa5.61□□□□□ -1.51
USP4-210ENST00000483212 PET117Q6UWS5 81 aa5.61□□□□□ -1.51
USP4-210ENST00000483212 LYSTQ99698 3801 aa5.61□□□□□ -1.51
USP4-210ENST00000483212 MAP1LC3CQ9BXW4 147 aa5.61□□□□□ -1.51
USP4-210ENST00000483212 IGLV4-69A0A075B6H9 119 aa5.6□□□□□ -1.51
USP4-210ENST00000483212 A0A087WX48 190 aa5.6□□□□□ -1.51
USP4-210ENST00000483212 TRAV8-6A0A0B4J262 113 aa5.6□□□□□ -1.51
USP4-210ENST00000483212 PRSS29PA6NIE9 313 aa5.6□□□□□ -1.51
USP4-210ENST00000483212 AKR1D1P51857 326 aa5.6□□□□□ -1.51
USP4-210ENST00000483212 SMAGPQ0VAQ4 97 aa5.6□□□□□ -1.51
USP4-210ENST00000483212 PMVKQ15126 192 aa5.6□□□□□ -1.51
USP4-210ENST00000483212 RNASE13Q5GAN3 156 aaKnown RBP5.6□□□□□ -1.51
USP4-210ENST00000483212 AMMECR1LQ6DCA0 310 aa5.6□□□□□ -1.51
USP4-210ENST00000483212 LGALS9CQ6DKI2 356 aa5.6□□□□□ -1.51
USP4-210ENST00000483212 Q6ZN92 141 aa5.6□□□□□ -1.51
USP4-210ENST00000483212 ZNF664Q8N3J9 261 aa5.6□□□□□ -1.51
USP4-210ENST00000483212 OR5A1Q8NGJ0 315 aa5.6□□□□□ -1.51
USP4-210ENST00000483212 CST9LQ9H4G1 147 aa5.6□□□□□ -1.51
USP4-210ENST00000483212 ALMS1Q8TCU4 4167 aa5.59□□□□□ -1.51
USP4-210ENST00000483212 TMEM262E9PQX1 116 aa5.59□□□□□ -1.51
USP4-210ENST00000483212 PRSS1P07477 247 aa5.59□□□□□ -1.51
USP4-210ENST00000483212 DNAH10OSP0CZ25 163 aa5.59□□□□□ -1.51
USP4-210ENST00000483212 CCL18P55774 89 aa5.59□□□□□ -1.51
USP4-210ENST00000483212 PKIAP61925 76 aa5.59□□□□□ -1.51
USP4-210ENST00000483212 LINC01556Q5JQF7 62 aa5.59□□□□□ -1.51
USP4-210ENST00000483212 DGAT2L7PQ6IED9 249 aa5.59□□□□□ -1.51
USP4-210ENST00000483212 TEX43Q6ZNM6 134 aa5.59□□□□□ -1.51
USP4-210ENST00000483212 FAM19A3Q7Z5A8 133 aa5.59□□□□□ -1.51
USP4-210ENST00000483212 TMEM101Q96IK0 257 aa5.59□□□□□ -1.51
USP4-210ENST00000483212 PMCHL2Q9BQD1 86 aa5.59□□□□□ -1.51
USP4-210ENST00000483212 VCX2Q9H322 139 aa5.59□□□□□ -1.51
USP4-210ENST00000483212 PRR34Q9NV39 138 aa5.59□□□□□ -1.51
USP4-210ENST00000483212 MRPL35Q9NZE8 188 aaKnown RBP5.59□□□□□ -1.51
USP4-210ENST00000483212 F8VRH5 84 aa5.58□□□□□ -1.52
USP4-210ENST00000483212 H0Y8G0 127 aa5.58□□□□□ -1.52
USP4-210ENST00000483212 UBE2D1P51668 147 aa5.58□□□□□ -1.52
USP4-210ENST00000483212 PAPPA-AS1Q5QFB9 102 aa5.58□□□□□ -1.52
USP4-210ENST00000483212 CDPF1Q6NVV7 123 aa5.58□□□□□ -1.52
USP4-210ENST00000483212 TENM2Q9NT68 2774 aa5.58□□□□□ -1.52
USP4-210ENST00000483212 A0A0J9YXV3 536 aa5.57□□□□□ -1.52
USP4-210ENST00000483212 IGHV3-30P01768 117 aa5.57□□□□□ -1.52
USP4-210ENST00000483212 IGHV3-33P01772 117 aa5.57□□□□□ -1.52
USP4-210ENST00000483212 IGLC3P0DOY3 106 aa5.57□□□□□ -1.52
USP4-210ENST00000483212 IGHV3-30-3P0DP02 117 aa5.57□□□□□ -1.52
USP4-210ENST00000483212 IGHV3-30-5P0DP03 117 aa5.57□□□□□ -1.52
USP4-210ENST00000483212 CASC10Q5T4H9 136 aa5.57□□□□□ -1.52
USP4-210ENST00000483212 NFE4Q86UQ8 179 aa5.57□□□□□ -1.52
USP4-210ENST00000483212 CHTOPQ9Y3Y2 248 aaKnown RBP5.57□□□□□ -1.52
USP4-210ENST00000483212 DNAH6Q9C0G6 4158 aa5.57□□□□□ -1.52
USP4-210ENST00000483212 SACSQ9NZJ4 4579 aa5.56□□□□□ -1.52
USP4-210ENST00000483212 IGLV5-45A0A087WSX0 123 aa5.56□□□□□ -1.52
USP4-210ENST00000483212 LINC00959A0A1B0GUT2 108 aa5.56□□□□□ -1.52
USP4-210ENST00000483212 C20orf202A1L168 122 aa5.56□□□□□ -1.52
USP4-210ENST00000483212 C11orf86A6NJI1 115 aa5.56□□□□□ -1.52
USP4-210ENST00000483212 C3orf84H3BNL1 204 aa5.56□□□□□ -1.52
USP4-210ENST00000483212 SIVA1O15304 175 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms