RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 LINC01549A6NIU2 74 aa8.27□□□□□ -1.09
SDC1-206ENST00000482879 FAM19A2Q8N3H0 131 aa8.27□□□□□ -1.09
SDC1-206ENST00000482879 SCGB3A1Q96QR1 104 aa8.27□□□□□ -1.09
SDC1-206ENST00000482879 PYGO1Q9Y3Y4 419 aa8.27□□□□□ -1.09
SDC1-206ENST00000482879 IGIPA6NJ69 53 aa8.26□□□□□ -1.09
SDC1-206ENST00000482879 IBA57-AS1B1ANH7 110 aa8.26□□□□□ -1.09
SDC1-206ENST00000482879 COA6Q5JTJ3 125 aaKnown RBP8.26□□□□□ -1.09
SDC1-206ENST00000482879 LINC00269Q8N2A0 174 aa8.26□□□□□ -1.09
SDC1-206ENST00000482879 ZNF664Q8N3J9 261 aa8.26□□□□□ -1.09
SDC1-206ENST00000482879 UBE2WQ96B02 151 aa8.26□□□□□ -1.09
SDC1-206ENST00000482879 OPRPNQ99935 248 aaPredicted RBP8.26□□□□□ -1.09
SDC1-206ENST00000482879 KRTAP1-5Q9BYS1 174 aa8.26□□□□□ -1.09
SDC1-206ENST00000482879 CDC42SE2Q9NRR3 84 aa8.26□□□□□ -1.09
SDC1-206ENST00000482879 MRPS36P82909 103 aaKnown RBP8.25□□□□□ -1.09
SDC1-206ENST00000482879 RNASE13Q5GAN3 156 aaKnown RBP8.25□□□□□ -1.09
SDC1-206ENST00000482879 CLPSL2Q6UWE3 100 aa8.25□□□□□ -1.09
SDC1-206ENST00000482879 Q6ZR54 194 aa8.25□□□□□ -1.09
SDC1-206ENST00000482879 Q6ZUT4 128 aa8.25□□□□□ -1.09
SDC1-206ENST00000482879 ERASQ7Z444 233 aa8.25□□□□□ -1.09
SDC1-206ENST00000482879 IGLV4-3A0A075B6K6 122 aa8.24□□□□□ -1.09
SDC1-206ENST00000482879 IGKV3OR2-268A0A0C4DH90 116 aa8.24□□□□□ -1.09
SDC1-206ENST00000482879 CRPP02741 224 aa8.24□□□□□ -1.09
SDC1-206ENST00000482879 REG3AQ06141 175 aa8.24□□□□□ -1.09
SDC1-206ENST00000482879 PDZD11Q5EBL8 140 aa8.24□□□□□ -1.09
SDC1-206ENST00000482879 ENHOQ6UWT2 76 aa8.24□□□□□ -1.09
SDC1-206ENST00000482879 FAM104AQ969W3 186 aa8.24□□□□□ -1.09
SDC1-206ENST00000482879 TMEM141Q96I45 108 aa8.24□□□□□ -1.09
SDC1-206ENST00000482879 TIMM17AQ99595 171 aa8.24□□□□□ -1.09
SDC1-206ENST00000482879 Q9HAA7 133 aa8.24□□□□□ -1.09
SDC1-206ENST00000482879 TRAV8-3A0A0A6YYJ7 113 aa8.23□□□□□ -1.09
SDC1-206ENST00000482879 S100A6P06703 90 aa8.23□□□□□ -1.09
SDC1-206ENST00000482879 NPSP0C0P6 89 aa8.23□□□□□ -1.09
SDC1-206ENST00000482879 Q6ZN92 141 aa8.23□□□□□ -1.09
SDC1-206ENST00000482879 VCX2Q9H322 139 aa8.23□□□□□ -1.09
SDC1-206ENST00000482879 PRR34Q9NV39 138 aa8.23□□□□□ -1.09
SDC1-206ENST00000482879 DNAH6Q9C0G6 4158 aa8.22□□□□□ -1.09
SDC1-206ENST00000482879 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.22□□□□□ -1.09
SDC1-206ENST00000482879 ATP5LO75964 103 aa8.22□□□□□ -1.09
SDC1-206ENST00000482879 PAPPA-AS1Q5QFB9 102 aa8.22□□□□□ -1.09
SDC1-206ENST00000482879 KMT2AQ03164 3969 aa8.21□□□□□ -1.09
SDC1-206ENST00000482879 LEPROTL1O95214 131 aa8.21□□□□□ -1.1
SDC1-206ENST00000482879 FABP4P15090 132 aa8.21□□□□□ -1.1
SDC1-206ENST00000482879 MIAQ16674 131 aa8.21□□□□□ -1.1
SDC1-206ENST00000482879 ZC2HC1BQ5TFG8 222 aa8.21□□□□□ -1.1
SDC1-206ENST00000482879 TEX43Q6ZNM6 134 aa8.21□□□□□ -1.1
SDC1-206ENST00000482879 IGLV10-54A0A075B6I4 117 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 IGKV2D-24A0A075B6R9 120 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 TRAV13-1A0A0B4J241 112 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 LINC00959A0A1B0GUT2 108 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 IFITM10A6NMD0 228 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 SS18Q15532 418 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 C1orf134Q5TEV5 83 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 LINC00173Q6ZV60 143 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 NFE4Q86UQ8 179 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 C6orf223Q8N319 242 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 BAALCQ8WXS3 180 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 IFI27L1Q96BM0 104 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 RMI2Q96E14 147 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 AMELXQ99217 191 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 C2orf88Q9BSF0 95 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 HSPB8Q9UJY1 196 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 SACSQ9NZJ4 4579 aa8.2□□□□□ -1.1
SDC1-206ENST00000482879 TRAV8-4A0A0B4J246 113 aa8.19□□□□□ -1.1
SDC1-206ENST00000482879 PRSS1P07477 247 aa8.19□□□□□ -1.1
SDC1-206ENST00000482879 C1orf43Q9BWL3 253 aa8.19□□□□□ -1.1
SDC1-206ENST00000482879 TM2D2Q9BX73 214 aa8.19□□□□□ -1.1
SDC1-206ENST00000482879 TMA7Q9Y2S6 64 aaKnown RBP8.19□□□□□ -1.1
SDC1-206ENST00000482879 CCL25O15444 150 aa8.18□□□□□ -1.1
SDC1-206ENST00000482879 SNRPEP62304 92 aaKnown RBP8.18□□□□□ -1.1
SDC1-206ENST00000482879 PMVKQ15126 192 aa8.18□□□□□ -1.1
SDC1-206ENST00000482879 CHCHD10Q8WYQ3 142 aaPredicted RBP8.18□□□□□ -1.1
SDC1-206ENST00000482879 CST9LQ9H4G1 147 aa8.18□□□□□ -1.1
SDC1-206ENST00000482879 PRSS29PA6NIE9 313 aa8.17□□□□□ -1.1
SDC1-206ENST00000482879 S100A2P29034 98 aa8.17□□□□□ -1.1
SDC1-206ENST00000482879 HIST3H2BBQ8N257 126 aa8.17□□□□□ -1.1
SDC1-206ENST00000482879 PACRGQ96M98 296 aaPredicted RBP8.17□□□□□ -1.1
SDC1-206ENST00000482879 COX11Q9Y6N1 276 aa8.17□□□□□ -1.1
SDC1-206ENST00000482879 GAGE12HA6NDE8 117 aa8.16□□□□□ -1.1
SDC1-206ENST00000482879 C5orf52A6NGY3 159 aa8.16□□□□□ -1.1
SDC1-206ENST00000482879 PSCAO43653 123 aa8.16□□□□□ -1.1
SDC1-206ENST00000482879 XCL1P47992 114 aa8.16□□□□□ -1.1
SDC1-206ENST00000482879 UBE2D1P51668 147 aa8.16□□□□□ -1.1
SDC1-206ENST00000482879 H0Y8G0 127 aa8.15□□□□□ -1.1
SDC1-206ENST00000482879 KRTAP26-1Q6PEX3 210 aa8.15□□□□□ -1.1
SDC1-206ENST00000482879 Q6ZRN7 208 aaPredicted RBP8.15□□□□□ -1.1
SDC1-206ENST00000482879 MAP1LC3CQ9BXW4 147 aa8.15□□□□□ -1.1
SDC1-206ENST00000482879 HYDINQ4G0P3 5121 aa8.15□□□□□ -1.11
SDC1-206ENST00000482879 TRAV12-1A0A0B4J245 112 aa8.14□□□□□ -1.11
SDC1-206ENST00000482879 A0A0J9YXV3 536 aa8.14□□□□□ -1.11
SDC1-206ENST00000482879 LINC00242Q5T6M2 205 aa8.14□□□□□ -1.11
SDC1-206ENST00000482879 CD164L2Q6UWJ8 174 aa8.14□□□□□ -1.11
SDC1-206ENST00000482879 KMT2CQ8NEZ4 4911 aaKnown RBP8.14□□□□□ -1.11
SDC1-206ENST00000482879 RTL8CO15255 209 aa8.13□□□□□ -1.11
SDC1-206ENST00000482879 SEC11AP67812 179 aa8.13□□□□□ -1.11
SDC1-206ENST00000482879 COX6A2Q02221 97 aa8.13□□□□□ -1.11
SDC1-206ENST00000482879 FOXI1Q12951 378 aa8.13□□□□□ -1.11
SDC1-206ENST00000482879 FAM19A3Q7Z5A8 133 aa8.13□□□□□ -1.11
SDC1-206ENST00000482879 MAPKAPK5-AS1Q8N8E1 139 aa8.13□□□□□ -1.11
SDC1-206ENST00000482879 HIST1H2BLQ99880 126 aa8.13□□□□□ -1.11
SDC1-206ENST00000482879 GEMIN7Q9H840 131 aaKnown RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms