RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 Q1RN00 199 aa13.09□□□□□ -0.31
CCM2-209ENST00000477605 TMEM86BQ8N661 226 aa13.09□□□□□ -0.31
CCM2-209ENST00000477605 GEMIN7Q9H840 131 aaKnown RBP13.09□□□□□ -0.31
CCM2-209ENST00000477605 C9JAW5 83 aa13.09□□□□□ -0.31
CCM2-209ENST00000477605 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.08□□□□□ -0.32
CCM2-209ENST00000477605 IGKV2-29A2NJV5 120 aaPredicted RBP13.08□□□□□ -0.32
CCM2-209ENST00000477605 PRSS2P07478 247 aa13.08□□□□□ -0.32
CCM2-209ENST00000477605 Q6ZUT4 128 aa13.08□□□□□ -0.32
CCM2-209ENST00000477605 PRM2P04554 102 aa13.07□□□□□ -0.32
CCM2-209ENST00000477605 LINC01620Q4KN68 170 aa13.07□□□□□ -0.32
CCM2-209ENST00000477605 Q9UF83 564 aa13.07□□□□□ -0.32
CCM2-209ENST00000477605 CSPG4Q6UVK1 2322 aa13.06□□□□□ -0.32
CCM2-209ENST00000477605 ADARB2-AS1A8MUL3 147 aa13.06□□□□□ -0.32
CCM2-209ENST00000477605 H7C2G1 150 aa13.06□□□□□ -0.32
CCM2-209ENST00000477605 ACANP16112 2415 aa13.06□□□□□ -0.32
CCM2-209ENST00000477605 SPINK8P0C7L1 97 aa13.06□□□□□ -0.32
CCM2-209ENST00000477605 RNASE13Q5GAN3 156 aaKnown RBP13.06□□□□□ -0.32
CCM2-209ENST00000477605 ADAMTSL4-AS1Q5T5F5 129 aa13.06□□□□□ -0.32
CCM2-209ENST00000477605 MTORP42345 2549 aa13.05□□□□□ -0.32
CCM2-209ENST00000477605 COX6CP09669 75 aa13.05□□□□□ -0.32
CCM2-209ENST00000477605 FHL3Q13643 280 aa13.05□□□□□ -0.32
CCM2-209ENST00000477605 FAM19A3Q7Z5A8 133 aa13.05□□□□□ -0.32
CCM2-209ENST00000477605 KRTAP1-3Q8IUG1 177 aa13.05□□□□□ -0.32
CCM2-209ENST00000477605 TEX29Q8N6K0 151 aa13.05□□□□□ -0.32
CCM2-209ENST00000477605 TRBV10-2A0A0K0K1G8 114 aa13.04□□□□□ -0.32
CCM2-209ENST00000477605 NDUFA1O15239 70 aa13.04□□□□□ -0.32
CCM2-209ENST00000477605 IL17DQ8TAD2 202 aa13.04□□□□□ -0.32
CCM2-209ENST00000477605 ZFHX3Q15911 3703 aa13.04□□□□□ -0.32
CCM2-209ENST00000477605 TRIAP1O43715 76 aa13.04□□□□□ -0.32
CCM2-209ENST00000477605 KHDC1LQ5JSQ8 128 aa13.04□□□□□ -0.32
CCM2-209ENST00000477605 DGAT2L7PQ6IED9 249 aa13.04□□□□□ -0.32
CCM2-209ENST00000477605 WFDC11Q8NEX6 87 aa13.04□□□□□ -0.32
CCM2-209ENST00000477605 ICOSQ9Y6W8 199 aa13.04□□□□□ -0.32
CCM2-209ENST00000477605 TRBV10-1A0A0K0K1A3 114 aa13.03□□□□□ -0.32
CCM2-209ENST00000477605 HERVK_113P63121 156 aa13.03□□□□□ -0.32
CCM2-209ENST00000477605 CSDC2Q9Y534 153 aaKnown RBP13.03□□□□□ -0.32
CCM2-209ENST00000477605 FLNAP21333 2647 aaKnown RBP13.03□□□□□ -0.32
CCM2-209ENST00000477605 RPL13AP40429 203 aaKnown RBP13.03□□□□□ -0.32
CCM2-209ENST00000477605 CIRBPQ14011 172 aaKnown RBP13.03□□□□□ -0.32
CCM2-209ENST00000477605 IGHV3-38A0A0C4DH36 116 aa13.02□□□□□ -0.33
CCM2-209ENST00000477605 XGP55808 180 aa13.02□□□□□ -0.33
CCM2-209ENST00000477605 CDKN2A-AS1Q9UH64 79 aa13.02□□□□□ -0.33
CCM2-209ENST00000477605 MT-ATP8P03928 68 aa13.01□□□□□ -0.33
CCM2-209ENST00000477605 ODF3L2Q3SX64 289 aa13.01□□□□□ -0.33
CCM2-209ENST00000477605 STHQ8IWL8 128 aa13.01□□□□□ -0.33
CCM2-209ENST00000477605 IGLV5-39A0A0G2JS06 123 aa13.01□□□□□ -0.33
CCM2-209ENST00000477605 CKS1BP61024 79 aa13.01□□□□□ -0.33
CCM2-209ENST00000477605 COPS9Q8WXC6 57 aa13.01□□□□□ -0.33
CCM2-209ENST00000477605 TMEM101Q96IK0 257 aa13.01□□□□□ -0.33
CCM2-209ENST00000477605 C1orf158Q8N1D5 194 aa13□□□□□ -0.33
CCM2-209ENST00000477605 CMC4P56277 68 aaPredicted RBP13□□□□□ -0.33
CCM2-209ENST00000477605 RPL36AP83881 106 aaKnown RBP13□□□□□ -0.33
CCM2-209ENST00000477605 DAZ2Q13117 558 aaKnown RBP13□□□□□ -0.33
CCM2-209ENST00000477605 DAZ4Q86SG3 579 aaKnown RBP13□□□□□ -0.33
CCM2-209ENST00000477605 RPL36ALQ969Q0 106 aaKnown RBP13□□□□□ -0.33
CCM2-209ENST00000477605 DAZ3Q9NR90 486 aaKnown RBP13□□□□□ -0.33
CCM2-209ENST00000477605 XCL2Q9UBD3 114 aa13□□□□□ -0.33
CCM2-209ENST00000477605 H3BT86 120 aa12.99□□□□□ -0.33
CCM2-209ENST00000477605 IGHV3OR16-12A0A075B7B8 117 aa12.98□□□□□ -0.33
CCM2-209ENST00000477605 A8MZ25 164 aa12.98□□□□□ -0.33
CCM2-209ENST00000477605 Q6ZSV7 163 aa12.98□□□□□ -0.33
CCM2-209ENST00000477605 Q96MF0 132 aa12.98□□□□□ -0.33
CCM2-209ENST00000477605 NTN5Q8WTR8 489 aaPredicted RBP12.98□□□□□ -0.33
CCM2-209ENST00000477605 K7EQD1 137 aa12.97□□□□□ -0.33
CCM2-209ENST00000477605 LINC00242Q5T6M2 205 aa12.97□□□□□ -0.33
CCM2-209ENST00000477605 SETD2Q9BYW2 2564 aaPredicted RBP12.97□□□□□ -0.33
CCM2-209ENST00000477605 TRGV1A0A0A0MS02 117 aa12.97□□□□□ -0.33
CCM2-209ENST00000477605 TRAV4A0A0B4J268 109 aa12.97□□□□□ -0.33
CCM2-209ENST00000477605 NACAE9PAV3 2078 aa12.96□□□□□ -0.33
CCM2-209ENST00000477605 PPDPFQ9H3Y8 114 aa12.96□□□□□ -0.33
CCM2-209ENST00000477605 C2CD3Q4AC94 2353 aa12.95□□□□□ -0.34
CCM2-209ENST00000477605 LST1O00453 97 aa12.95□□□□□ -0.34
CCM2-209ENST00000477605 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.95□□□□□ -0.34
CCM2-209ENST00000477605 COX6A2Q02221 97 aa12.95□□□□□ -0.34
CCM2-209ENST00000477605 C2orf82Q6UX34 121 aa12.95□□□□□ -0.34
CCM2-209ENST00000477605 SORL1Q92673 2214 aa12.94□□□□□ -0.34
CCM2-209ENST00000477605 UBE2WQ96B02 151 aa12.94□□□□□ -0.34
CCM2-209ENST00000477605 CR1P17927 2039 aa12.94□□□□□ -0.34
CCM2-209ENST00000477605 H7C423 109 aa12.93□□□□□ -0.34
CCM2-209ENST00000477605 CCL24O00175 119 aa12.93□□□□□ -0.34
CCM2-209ENST00000477605 LINC00308Q8TCZ7 52 aa12.93□□□□□ -0.34
CCM2-209ENST00000477605 HERV-K104P63124 156 aa12.93□□□□□ -0.34
CCM2-209ENST00000477605 SMR3AQ99954 134 aa12.93□□□□□ -0.34
CCM2-209ENST00000477605 Q9H8V8 135 aa12.93□□□□□ -0.34
CCM2-209ENST00000477605 SMIM1B2RUZ4 78 aa12.92□□□□□ -0.34
CCM2-209ENST00000477605 NPC2P61916 151 aa12.92□□□□□ -0.34
CCM2-209ENST00000477605 NTM-AS1Q6ZSK4 140 aa12.92□□□□□ -0.34
CCM2-209ENST00000477605 CITED1Q99966 193 aa12.92□□□□□ -0.34
CCM2-209ENST00000477605 CDC42SE2Q9NRR3 84 aa12.92□□□□□ -0.34
CCM2-209ENST00000477605 TRAV8-4A0A0B4J246 113 aa12.91□□□□□ -0.34
CCM2-209ENST00000477605 LINC00694P0DN24 101 aa12.91□□□□□ -0.34
CCM2-209ENST00000477605 DNAJC9-AS1A6NH13 148 aa12.9□□□□□ -0.34
CCM2-209ENST00000477605 DEFB121Q5J5C9 76 aa12.9□□□□□ -0.34
CCM2-209ENST00000477605 Q6ZTI0 123 aa12.9□□□□□ -0.34
CCM2-209ENST00000477605 FAM110AQ9BQ89 295 aa12.9□□□□□ -0.34
CCM2-209ENST00000477605 TEX49A0A1B0GTD5 131 aa12.9□□□□□ -0.34
CCM2-209ENST00000477605 CITED2Q99967 270 aaPredicted RBP12.9□□□□□ -0.34
CCM2-209ENST00000477605 NF1P21359 2839 aa12.9□□□□□ -0.35
CCM2-209ENST00000477605 ZNF625Q96I27 306 aaPredicted RBP12.89□□□□□ -0.35
CCM2-209ENST00000477605 MRPL23Q16540 153 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms