RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-208ENST00000477541 B4DSR2 109 aa9.87□□□□□ -0.83
HLA-DMA-208ENST00000477541 DSCR9P59020 149 aa9.87□□□□□ -0.83
HLA-DMA-208ENST00000477541 ADAMTSL4-AS1Q5T5F5 129 aa9.87□□□□□ -0.83
HLA-DMA-208ENST00000477541 IMUPQ9GZP8 106 aa9.87□□□□□ -0.83
HLA-DMA-208ENST00000477541 BEX4Q9NWD9 120 aaPredicted RBP9.87□□□□□ -0.83
HLA-DMA-208ENST00000477541 TRAV8-3A0A0A6YYJ7 113 aa9.87□□□□□ -0.83
HLA-DMA-208ENST00000477541 IGKV3-20P01619 116 aa9.87□□□□□ -0.83
HLA-DMA-208ENST00000477541 CCL19Q99731 98 aa9.87□□□□□ -0.83
HLA-DMA-208ENST00000477541 IGHV3-53P01767 116 aa9.86□□□□□ -0.83
HLA-DMA-208ENST00000477541 UBE2E2Q96LR5 201 aa9.86□□□□□ -0.83
HLA-DMA-208ENST00000477541 CRLF1O75462 422 aa9.85□□□□□ -0.83
HLA-DMA-208ENST00000477541 HERVK_113P63121 156 aa9.85□□□□□ -0.83
HLA-DMA-208ENST00000477541 BEAN1Q3B7T3 259 aa9.85□□□□□ -0.83
HLA-DMA-208ENST00000477541 IGLV5-39A0A0G2JS06 123 aa9.85□□□□□ -0.83
HLA-DMA-208ENST00000477541 J3QLI3 93 aa9.85□□□□□ -0.83
HLA-DMA-208ENST00000477541 ADARB2-AS1A8MUL3 147 aa9.84□□□□□ -0.83
HLA-DMA-208ENST00000477541 B5MCH6 92 aa9.83□□□□□ -0.84
HLA-DMA-208ENST00000477541 C19orf84I3L1E1 186 aa9.83□□□□□ -0.84
HLA-DMA-208ENST00000477541 COX7A2LO14548 114 aa9.83□□□□□ -0.84
HLA-DMA-208ENST00000477541 SYNJ2BPP57105 145 aa9.83□□□□□ -0.84
HLA-DMA-208ENST00000477541 TMEM101Q96IK0 257 aa9.83□□□□□ -0.84
HLA-DMA-208ENST00000477541 DUX3Q96PT4 197 aa9.83□□□□□ -0.84
HLA-DMA-208ENST00000477541 CSDC2Q9Y534 153 aaKnown RBP9.83□□□□□ -0.84
HLA-DMA-208ENST00000477541 RS1O15537 224 aa9.82□□□□□ -0.84
HLA-DMA-208ENST00000477541 TRACP01848 142 aa9.82□□□□□ -0.84
HLA-DMA-208ENST00000477541 RBMY1A1P0DJD3 496 aaKnown RBP9.82□□□□□ -0.84
HLA-DMA-208ENST00000477541 RBMY1CP0DJD4 496 aa9.82□□□□□ -0.84
HLA-DMA-208ENST00000477541 ATP5J2P56134 94 aa9.82□□□□□ -0.84
HLA-DMA-208ENST00000477541 RBMY1FQ15415 496 aaKnown RBP9.82□□□□□ -0.84
HLA-DMA-208ENST00000477541 HOXD3P31249 432 aaPredicted RBP9.82□□□□□ -0.84
HLA-DMA-208ENST00000477541 HERV-K104P63124 156 aa9.82□□□□□ -0.84
HLA-DMA-208ENST00000477541 DUX5Q96PT3 197 aa9.82□□□□□ -0.84
HLA-DMA-208ENST00000477541 SS18L2Q9UHA2 77 aa9.82□□□□□ -0.84
HLA-DMA-208ENST00000477541 NACAE9PAV3 2078 aa9.81□□□□□ -0.84
HLA-DMA-208ENST00000477541 IGHV4-30-2A0A087WSY4 118 aa9.81□□□□□ -0.84
HLA-DMA-208ENST00000477541 TMEM95Q3KNT9 176 aa9.81□□□□□ -0.84
HLA-DMA-208ENST00000477541 LINC00308Q8TCZ7 52 aa9.81□□□□□ -0.84
HLA-DMA-208ENST00000477541 CLEC2BQ92478 149 aa9.81□□□□□ -0.84
HLA-DMA-208ENST00000477541 PF4P02776 101 aa9.8□□□□□ -0.84
HLA-DMA-208ENST00000477541 ATP5G1P05496 136 aa9.8□□□□□ -0.84
HLA-DMA-208ENST00000477541 FAM222AQ5U5X8 452 aa9.8□□□□□ -0.84
HLA-DMA-208ENST00000477541 DGAT2L7PQ6IED9 249 aa9.8□□□□□ -0.84
HLA-DMA-208ENST00000477541 CEMP1Q6PRD7 247 aaPredicted RBP9.8□□□□□ -0.84
HLA-DMA-208ENST00000477541 SHISA2Q6UWI4 295 aa9.8□□□□□ -0.84
HLA-DMA-208ENST00000477541 CDKN2A-AS1Q9UH64 79 aa9.8□□□□□ -0.84
HLA-DMA-208ENST00000477541 C11orf72Q8NBR9 251 aa9.79□□□□□ -0.84
HLA-DMA-208ENST00000477541 PEMTQ9UBM1 199 aa9.79□□□□□ -0.84
HLA-DMA-208ENST00000477541 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.79□□□□□ -0.84
HLA-DMA-208ENST00000477541 IGHV3-73A0A0B4J1V6 119 aa9.79□□□□□ -0.84
HLA-DMA-208ENST00000477541 IGKV2-29A2NJV5 120 aaPredicted RBP9.79□□□□□ -0.84
HLA-DMA-208ENST00000477541 INSP01308 110 aa9.79□□□□□ -0.84
HLA-DMA-208ENST00000477541 IGHV4-59P01825 116 aa9.79□□□□□ -0.84
HLA-DMA-208ENST00000477541 DEFB131AP59861 70 aa9.79□□□□□ -0.84
HLA-DMA-208ENST00000477541 DEFB112Q30KQ8 113 aa9.79□□□□□ -0.84
HLA-DMA-208ENST00000477541 CITED2Q99967 270 aaPredicted RBP9.79□□□□□ -0.84
HLA-DMA-208ENST00000477541 OVOL2Q9BRP0 275 aa9.79□□□□□ -0.84
HLA-DMA-208ENST00000477541 TMEM126AQ9H061 195 aa9.79□□□□□ -0.84
HLA-DMA-208ENST00000477541 VPREB3Q9UKI3 123 aa9.79□□□□□ -0.84
HLA-DMA-208ENST00000477541 TRBV10-1A0A0K0K1A3 114 aa9.78□□□□□ -0.84
HLA-DMA-208ENST00000477541 CCDC179H3BU77 68 aa9.78□□□□□ -0.84
HLA-DMA-208ENST00000477541 PROK1P58294 105 aa9.78□□□□□ -0.84
HLA-DMA-208ENST00000477541 LINC01356Q8N9X3 169 aa9.78□□□□□ -0.84
HLA-DMA-208ENST00000477541 KNCNA6PVL3 124 aa9.77□□□□□ -0.85
HLA-DMA-208ENST00000477541 LINC00643Q86TS7 51 aa9.77□□□□□ -0.85
HLA-DMA-208ENST00000477541 AVPP01185 164 aa9.76□□□□□ -0.85
HLA-DMA-208ENST00000477541 INAFM2P0DMQ5 153 aa9.76□□□□□ -0.85
HLA-DMA-208ENST00000477541 RNASE13Q5GAN3 156 aaKnown RBP9.76□□□□□ -0.85
HLA-DMA-208ENST00000477541 SDIM1Q6ZPB5 146 aa9.76□□□□□ -0.85
HLA-DMA-208ENST00000477541 Q6ZSN1 163 aa9.76□□□□□ -0.85
HLA-DMA-208ENST00000477541 DAND5Q8N907 189 aa9.76□□□□□ -0.85
HLA-DMA-208ENST00000477541 Q9H8V8 135 aa9.76□□□□□ -0.85
HLA-DMA-208ENST00000477541 RBMY1BA6NDE4 496 aaKnown RBP9.76□□□□□ -0.85
HLA-DMA-208ENST00000477541 RBMY1EA6NEQ0 496 aaKnown RBP9.76□□□□□ -0.85
HLA-DMA-208ENST00000477541 RBMY1DP0C7P1 496 aaKnown RBP9.76□□□□□ -0.85
HLA-DMA-208ENST00000477541 CXCL5P42830 114 aa9.76□□□□□ -0.85
HLA-DMA-208ENST00000477541 DAZ2Q13117 558 aaKnown RBP9.76□□□□□ -0.85
HLA-DMA-208ENST00000477541 LINC00242Q5T6M2 205 aa9.76□□□□□ -0.85
HLA-DMA-208ENST00000477541 DAZ4Q86SG3 579 aaKnown RBP9.76□□□□□ -0.85
HLA-DMA-208ENST00000477541 FAM110AQ9BQ89 295 aa9.76□□□□□ -0.85
HLA-DMA-208ENST00000477541 DAZ3Q9NR90 486 aaKnown RBP9.76□□□□□ -0.85
HLA-DMA-208ENST00000477541 IGHV3OR16-12A0A075B7B8 117 aa9.75□□□□□ -0.85
HLA-DMA-208ENST00000477541 NPC2P61916 151 aa9.75□□□□□ -0.85
HLA-DMA-208ENST00000477541 C10orf99Q6UWK7 81 aa9.75□□□□□ -0.85
HLA-DMA-208ENST00000477541 ZNF625Q96I27 306 aaPredicted RBP9.75□□□□□ -0.85
HLA-DMA-208ENST00000477541 LINC01587Q99440 93 aa9.75□□□□□ -0.85
HLA-DMA-208ENST00000477541 ZNF702PQ9H963 129 aa9.75□□□□□ -0.85
HLA-DMA-208ENST00000477541 A8MZ25 164 aa9.74□□□□□ -0.85
HLA-DMA-208ENST00000477541 SMIM1B2RUZ4 78 aa9.74□□□□□ -0.85
HLA-DMA-208ENST00000477541 TRAV13-2A0A0B4J235 113 aa9.73□□□□□ -0.85
HLA-DMA-208ENST00000477541 HTN1P15515 57 aa9.73□□□□□ -0.85
HLA-DMA-208ENST00000477541 RPL36AP83881 106 aaKnown RBP9.73□□□□□ -0.85
HLA-DMA-208ENST00000477541 Q6ZSV7 163 aa9.73□□□□□ -0.85
HLA-DMA-208ENST00000477541 IL17DQ8TAD2 202 aa9.73□□□□□ -0.85
HLA-DMA-208ENST00000477541 RPL36ALQ969Q0 106 aaKnown RBP9.73□□□□□ -0.85
HLA-DMA-208ENST00000477541 MAP6D1Q9H9H5 199 aa9.73□□□□□ -0.85
HLA-DMA-208ENST00000477541 Q6YL49 198 aa9.73□□□□□ -0.85
HLA-DMA-208ENST00000477541 Q8N2B8 174 aa9.73□□□□□ -0.85
HLA-DMA-208ENST00000477541 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.72□□□□□ -0.85
HLA-DMA-208ENST00000477541 FSHBP01225 129 aa9.72□□□□□ -0.85
HLA-DMA-208ENST00000477541 MEIG1Q5JSS6 88 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms