RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 FOCADQ5VW36 1801 aa0.33□□□□□ -2.36
VPS50-212ENST00000476413 ZMYM4Q5VZL5 1548 aa0.33□□□□□ -2.36
VPS50-212ENST00000476413 IGF2RP11717 2491 aa0.32□□□□□ -2.36
VPS50-212ENST00000476413 MYH8P13535 1937 aa0.32□□□□□ -2.36
VPS50-212ENST00000476413 TCHHQ07283 1943 aa0.32□□□□□ -2.36
VPS50-212ENST00000476413 PIEZO1Q92508 2521 aa0.32□□□□□ -2.36
VPS50-212ENST00000476413 MYH9P35579 1960 aaKnown RBP0.32□□□□□ -2.36
VPS50-212ENST00000476413 A0A1B0GWA3 101 aa0.32□□□□□ -2.36
VPS50-212ENST00000476413 CRYM-AS1A6NIL9 109 aa0.32□□□□□ -2.36
VPS50-212ENST00000476413 G3V318 75 aa0.32□□□□□ -2.36
VPS50-212ENST00000476413 Q8IZM0 81 aa0.32□□□□□ -2.36
VPS50-212ENST00000476413 PRO1933Q9H354 126 aa0.32□□□□□ -2.36
VPS50-212ENST00000476413 PRO1854Q9UHT4 67 aa0.32□□□□□ -2.36
VPS50-212ENST00000476413 AP4S1Q9Y587 144 aa0.32□□□□□ -2.36
VPS50-212ENST00000476413 U3KQA8 63 aa0.32□□□□□ -2.36
VPS50-212ENST00000476413 ARL2-SNX15V9GYD0 113 aa0.32□□□□□ -2.36
VPS50-212ENST00000476413 MRC1P22897 1456 aa0.32□□□□□ -2.36
VPS50-212ENST00000476413 GOLGA3Q08378 1498 aa0.32□□□□□ -2.36
VPS50-212ENST00000476413 AHCTF1Q8WYP5 2266 aa0.31□□□□□ -2.36
VPS50-212ENST00000476413 DOPEY2Q9Y3R5 2298 aa0.31□□□□□ -2.36
VPS50-212ENST00000476413 PLCE1Q9P212 2302 aa0.31□□□□□ -2.36
VPS50-212ENST00000476413 A2ML1A8K2U0 1454 aa0.31□□□□□ -2.36
VPS50-212ENST00000476413 MBD5Q9P267 1494 aa0.31□□□□□ -2.36
VPS50-212ENST00000476413 FXYD6-FXYD2A0A087WZ82 144 aa0.31□□□□□ -2.36
VPS50-212ENST00000476413 FDCSPQ8NFU4 85 aa0.31□□□□□ -2.36
VPS50-212ENST00000476413 TMEM263Q8WUH6 116 aaKnown RBP0.31□□□□□ -2.36
VPS50-212ENST00000476413 FAM167A-AS1Q96KT0 104 aa0.31□□□□□ -2.36
VPS50-212ENST00000476413 CADP27708 2225 aa0.3□□□□□ -2.36
VPS50-212ENST00000476413 F8P00451 2351 aa0.3□□□□□ -2.36
VPS50-212ENST00000476413 TMEM218A2RU14 115 aa0.3□□□□□ -2.36
VPS50-212ENST00000476413 LINC00587B1AMM8 73 aa0.3□□□□□ -2.36
VPS50-212ENST00000476413 TMEM262E9PQX1 116 aa0.3□□□□□ -2.36
VPS50-212ENST00000476413 HSD52Q0P140 79 aa0.3□□□□□ -2.36
VPS50-212ENST00000476413 CGREF1Q99674 301 aa0.3□□□□□ -2.36
VPS50-212ENST00000476413 TP53AIP1Q9HCN2 124 aa0.3□□□□□ -2.36
VPS50-212ENST00000476413 CELSR2Q9HCU4 2923 aa0.3□□□□□ -2.36
VPS50-212ENST00000476413 NWD2Q9ULI1 1742 aa0.3□□□□□ -2.36
VPS50-212ENST00000476413 MYOM2P54296 1465 aa0.29□□□□□ -2.36
VPS50-212ENST00000476413 MAPKBP1O60336 1514 aa0.29□□□□□ -2.36
VPS50-212ENST00000476413 ERCC6L2Q5T890 1561 aa0.29□□□□□ -2.36
VPS50-212ENST00000476413 TRBV6-1A0A0K0K1D8 114 aa0.29□□□□□ -2.36
VPS50-212ENST00000476413 C10orf142B7Z368 130 aa0.29□□□□□ -2.36
VPS50-212ENST00000476413 NDUFC1O43677 76 aa0.29□□□□□ -2.36
VPS50-212ENST00000476413 BCE1O60756 84 aa0.29□□□□□ -2.36
VPS50-212ENST00000476413 LINC00032P0C843 101 aa0.29□□□□□ -2.36
VPS50-212ENST00000476413 IGLC1P0CG04 106 aa0.29□□□□□ -2.36
VPS50-212ENST00000476413 SAA2P0DJI9 122 aaPredicted RBP0.29□□□□□ -2.36
VPS50-212ENST00000476413 Q0VG73 95 aa0.29□□□□□ -2.36
VPS50-212ENST00000476413 SPTBN1Q01082 2364 aaKnown RBP0.29□□□□□ -2.36
VPS50-212ENST00000476413 C10orf71Q711Q0 1435 aa0.29□□□□□ -2.36
VPS50-212ENST00000476413 SCAPERQ9BY12 1400 aa0.29□□□□□ -2.36
VPS50-212ENST00000476413 POLA1P09884 1462 aaPredicted RBP0.29□□□□□ -2.36
VPS50-212ENST00000476413 NCOR1O75376 2440 aa0.28□□□□□ -2.36
VPS50-212ENST00000476413 EIF4G3O43432 1585 aaKnown RBP0.28□□□□□ -2.36
VPS50-212ENST00000476413 ASXL3Q9C0F0 2248 aa0.28□□□□□ -2.36
VPS50-212ENST00000476413 ATP6V1G2-DDX39BF2Z307 99 aa0.28□□□□□ -2.36
VPS50-212ENST00000476413 SEC11AP67812 179 aa0.28□□□□□ -2.36
VPS50-212ENST00000476413 WFDC2Q14508 124 aa0.28□□□□□ -2.36
VPS50-212ENST00000476413 CDC42SE2Q9NRR3 84 aa0.28□□□□□ -2.36
VPS50-212ENST00000476413 LINC00474Q9P2X8 69 aa0.28□□□□□ -2.36
VPS50-212ENST00000476413 PTPRQQ9UMZ3 2332 aa0.27□□□□□ -2.37
VPS50-212ENST00000476413 SPTA1P02549 2419 aa0.27□□□□□ -2.37
VPS50-212ENST00000476413 FAM208BQ5VWN6 2430 aa0.27□□□□□ -2.37
VPS50-212ENST00000476413 ABCA2Q9BZC7 2435 aa0.27□□□□□ -2.37
VPS50-212ENST00000476413 MYH7P12883 1935 aa0.27□□□□□ -2.37
VPS50-212ENST00000476413 OTOGQ6ZRI0 2925 aa0.27□□□□□ -2.37
VPS50-212ENST00000476413 DEFB109BQ30KR1 87 aa0.27□□□□□ -2.37
VPS50-212ENST00000476413 SFTA2Q6UW10 78 aa0.27□□□□□ -2.37
VPS50-212ENST00000476413 FAM223AQ8IWN6 122 aa0.27□□□□□ -2.37
VPS50-212ENST00000476413 USMG5Q96IX5 58 aa0.27□□□□□ -2.37
VPS50-212ENST00000476413 BCL9LQ86UU0 1499 aa0.27□□□□□ -2.37
VPS50-212ENST00000476413 KMT2DO14686 5537 aa0.27□□□□□ -2.37
VPS50-212ENST00000476413 ZFYVE26Q68DK2 2539 aa0.27□□□□□ -2.37
VPS50-212ENST00000476413 FAM135AQ9P2D6 1515 aa0.27□□□□□ -2.37
VPS50-212ENST00000476413 UBR5O95071 2799 aaPredicted RBP0.27□□□□□ -2.37
VPS50-212ENST00000476413 IFT172Q9UG01 1749 aa0.27□□□□□ -2.37
VPS50-212ENST00000476413 URB1O60287 2271 aaKnown RBP0.26□□□□□ -2.37
VPS50-212ENST00000476413 SPTBN2O15020 2390 aa0.26□□□□□ -2.37
VPS50-212ENST00000476413 ANK2Q01484 3957 aa0.26□□□□□ -2.37
VPS50-212ENST00000476413 MAP1BP46821 2468 aaKnown RBP0.26□□□□□ -2.37
VPS50-212ENST00000476413 TRAV30A0A087WSZ9 112 aa0.26□□□□□ -2.37
VPS50-212ENST00000476413 TRBV7-4A0A0J9YYF1 115 aa0.26□□□□□ -2.37
VPS50-212ENST00000476413 SYS1-DBNDD2H3BUS1 97 aa0.26□□□□□ -2.37
VPS50-212ENST00000476413 GNGT2O14610 69 aa0.26□□□□□ -2.37
VPS50-212ENST00000476413 COX8AP10176 69 aa0.26□□□□□ -2.37
VPS50-212ENST00000476413 PMCHL1Q16048 86 aa0.26□□□□□ -2.37
VPS50-212ENST00000476413 Q5VSD8 79 aa0.26□□□□□ -2.37
VPS50-212ENST00000476413 ACBD7Q8N6N7 88 aa0.26□□□□□ -2.37
VPS50-212ENST00000476413 ARAP2Q8WZ64 1704 aa0.26□□□□□ -2.37
VPS50-212ENST00000476413 MYO7BQ6PIF6 2116 aa0.26□□□□□ -2.37
VPS50-212ENST00000476413 CACNA1CQ13936 2221 aa0.26□□□□□ -2.37
VPS50-212ENST00000476413 LRP1Q07954 4544 aaKnown RBP0.25□□□□□ -2.37
VPS50-212ENST00000476413 AKAP6Q13023 2319 aa0.25□□□□□ -2.37
VPS50-212ENST00000476413 H3BQF6 201 aa0.25□□□□□ -2.37
VPS50-212ENST00000476413 SPINK4O60575 86 aa0.25□□□□□ -2.37
VPS50-212ENST00000476413 COX6B1P14854 86 aa0.25□□□□□ -2.37
VPS50-212ENST00000476413 RBP2P50120 134 aa0.25□□□□□ -2.37
VPS50-212ENST00000476413 S100A10P60903 97 aa0.25□□□□□ -2.37
VPS50-212ENST00000476413 UBE2D3P61077 147 aa0.25□□□□□ -2.37
VPS50-212ENST00000476413 UBE2D2P62837 147 aa0.25□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 274 ms