RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 CIB3Q96Q77 187 aaPredicted RBP2.78□□□□□ -1.96
USP4-209ENST00000475873 SEC11CQ9BY50 192 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 MED28Q9H204 178 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 AAMDCQ9H7C9 122 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 OR5AC2Q9NZP5 309 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 ZNF492Q9P255 531 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 CYSLTR1Q9Y271 337 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 MUC12Q9UKN1 5478 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 IGLV10-54A0A075B6I4 117 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 IGLV7-46A0A075B6I9 117 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 TRGV11A0A075B6L2 103 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.77□□□□□ -1.97
USP4-209ENST00000475873 FAM236DA0A1B0GTK5 79 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 A0A1W2PNN7 141 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 BCL2L11O43521 198 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 CRPP02741 224 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 ANGP03950 147 aaKnown RBP2.77□□□□□ -1.97
USP4-209ENST00000475873 IGLV7-43P04211 117 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 IL5P05113 134 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 FAM236CP0DP71 79 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 MGST1P10620 155 aaKnown RBP2.77□□□□□ -1.97
USP4-209ENST00000475873 AKR1C1Q04828 323 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 ELOBQ15370 118 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 MIAQ16674 131 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 KRTAP20-1Q3LI63 56 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 ZNF876PQ49A33 203 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 Q6AWC8 147 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 UFSP1Q6NVU6 142 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 LINC00305Q7Z4B0 112 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 EXOC3-AS1Q8N2X6 119 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 OR2T35Q8NGX2 323 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 DIRC1Q969H9 104 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 BORCS7Q96B45 105 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 PHYHIPLQ96FC7 376 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 HIST1H2BLQ99880 126 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 SH3BGRL3Q9H299 93 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 RPP21Q9H633 154 aaKnown RBP2.77□□□□□ -1.97
USP4-209ENST00000475873 NDUFB11Q9NX14 153 aa2.77□□□□□ -1.97
USP4-209ENST00000475873 A0A0A0MQY5 61 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 A0A1B0GV50 99 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 DUXBA0A1W2PPF3 345 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 PGPA6NDG6 321 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 TGFBR1P36897 503 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 C1orf137Q5JT78 98 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 ZNF506Q5JVG8 444 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 LYRM7Q5U5X0 104 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 HRCT1Q6UXD1 115 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 Q6ZVH6 145 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 BPIFA4PQ86YQ2 179 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 TMEM101Q96IK0 257 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 C9orf85Q96MD7 179 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 KIR2DL4Q99706 377 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 NAA38Q9BRA0 125 aaKnown RBP2.76□□□□□ -1.97
USP4-209ENST00000475873 RTBDNQ9BSG5 229 aaPredicted RBP2.76□□□□□ -1.97
USP4-209ENST00000475873 PARLQ9H300 379 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 JPT2Q9H910 190 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 UQCR10Q9UDW1 63 aa2.76□□□□□ -1.97
USP4-209ENST00000475873 TRBV19A0A075B6N1 114 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 A0A087X002 238 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 TRAV1-1A0A0B4J248 108 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 B4DEV8 164 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 FNDC10F2Z333 226 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 F5H697 171 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 NDUFC2O95298 119 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 MT-ND6P03923 174 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 SPINK8P0C7L1 97 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 ADCYAP1P18509 176 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 SDC2P34741 201 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 RPS10P46783 165 aaKnown RBP2.75□□□□□ -1.97
USP4-209ENST00000475873 UBE2D1P51668 147 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 RPS28P62857 69 aaKnown RBP2.75□□□□□ -1.97
USP4-209ENST00000475873 SLC38A11Q08AI6 406 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 HIGD2BQ4VC39 106 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 LYZL2Q7Z4W2 148 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 LINC01561Q8N1V8 128 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 LINC00269Q8N2A0 174 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 TMEM229BQ8NBD8 167 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 TMEM18Q96B42 140 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 SOSTQ9BQB4 213 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 KRTAP4-2Q9BYR5 136 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 WDR61Q9GZS3 305 aaKnown RBP2.75□□□□□ -1.97
USP4-209ENST00000475873 SLIRPQ9GZT3 109 aaKnown RBP2.75□□□□□ -1.97
USP4-209ENST00000475873 RNASE7Q9H1E1 156 aaKnown RBP2.75□□□□□ -1.97
USP4-209ENST00000475873 NAA60Q9H7X0 242 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 TXNL4BQ9NX01 149 aaKnown RBP2.75□□□□□ -1.97
USP4-209ENST00000475873 C11orf21Q9P2W6 132 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 TPRKBQ9Y3C4 175 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 PAM16Q9Y3D7 125 aa2.75□□□□□ -1.97
USP4-209ENST00000475873 FAM240AA0A1B0GVK7 77 aa2.74□□□□□ -1.97
USP4-209ENST00000475873 A6NDN8 102 aa2.74□□□□□ -1.97
USP4-209ENST00000475873 TMEM262E9PQX1 116 aa2.74□□□□□ -1.97
USP4-209ENST00000475873 H3BP45 60 aa2.74□□□□□ -1.97
USP4-209ENST00000475873 DPM2O94777 84 aa2.74□□□□□ -1.97
USP4-209ENST00000475873 OR5AL1P0C617 328 aa2.74□□□□□ -1.97
USP4-209ENST00000475873 PRSS3P35030 304 aa2.74□□□□□ -1.97
USP4-209ENST00000475873 SMCPP49901 116 aaPredicted RBP2.74□□□□□ -1.97
USP4-209ENST00000475873 CYCSP99999 105 aaKnown RBP2.74□□□□□ -1.97
USP4-209ENST00000475873 RPL18AQ02543 176 aaKnown RBP2.74□□□□□ -1.97
USP4-209ENST00000475873 IL15RAQ13261 267 aa2.74□□□□□ -1.97
USP4-209ENST00000475873 CTF1Q16619 201 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms