RNA–Protein interactions for RNA: ENST00000474020.5

ATPAF1-204, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 535 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-204ENST00000474020 VPS25Q9BRG1 176 aa4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 TIMM21Q9BVV7 248 aa4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 TTTY13Q9BZ97 58 aa4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 SPANXB1Q9NS25 103 aaPredicted RBP4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 XCL2Q9UBD3 114 aa4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 IGLV4-3A0A075B6K6 122 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 TRAV4A0A0B4J268 109 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 TMEM223A0PJW6 202 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 IGLL5B9A064 214 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 F8W1H4 67 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 K7EQD1 137 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 K7ERJ3 54 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 UBE2L6O14933 153 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 RBMY1A1P0DJD3 496 aaKnown RBP4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 RBMY1CP0DJD4 496 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 CR1P17927 2039 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 EMP1P54849 157 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 DAZ2Q13117 558 aaKnown RBP4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 RBMY1FQ15415 496 aaKnown RBP4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 ODF3L2Q3SX64 289 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 UFSP1Q6NVU6 142 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 DAZ4Q86SG3 579 aaKnown RBP4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 NDUFA11Q86Y39 141 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 C11orf72Q8NBR9 251 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 LINC01006Q8NI28 216 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 TMEM101Q96IK0 257 aa4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 DAZ3Q9NR90 486 aaKnown RBP4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 NIPBLQ6KC79 2804 aaeCLIP4.25□□□□□ -1.73
ATPAF1-204ENST00000474020 CSPG4Q6UVK1 2322 aa4.24□□□□□ -1.73
ATPAF1-204ENST00000474020 HIVEP1P15822 2718 aa4.24□□□□□ -1.73
ATPAF1-204ENST00000474020 NBEAL1Q6ZS30 2694 aa4.24□□□□□ -1.73
ATPAF1-204ENST00000474020 TRGV2A0A075B6R0 118 aa4.24□□□□□ -1.73
ATPAF1-204ENST00000474020 A0A0J9YY99 117 aa4.24□□□□□ -1.73
ATPAF1-204ENST00000474020 TINCRA0A1B0GVN0 87 aa4.24□□□□□ -1.73
ATPAF1-204ENST00000474020 A0A1B0GWB2 263 aa4.24□□□□□ -1.73
ATPAF1-204ENST00000474020 ZNF22P17026 224 aaPredicted RBP4.24□□□□□ -1.73
ATPAF1-204ENST00000474020 MRPS36P82909 103 aaKnown RBP4.24□□□□□ -1.73
ATPAF1-204ENST00000474020 CIRBPQ14011 172 aaKnown RBP4.24□□□□□ -1.73
ATPAF1-204ENST00000474020 SLC25A29Q8N8R3 303 aa4.24□□□□□ -1.73
ATPAF1-204ENST00000474020 DEFB104AQ8WTQ1 72 aa4.24□□□□□ -1.73
ATPAF1-204ENST00000474020 NAA38Q9BRA0 125 aaKnown RBP4.24□□□□□ -1.73
ATPAF1-204ENST00000474020 ESM1Q9NQ30 184 aa4.24□□□□□ -1.73
ATPAF1-204ENST00000474020 TRBV20-1A0A075B6N2 111 aa4.23□□□□□ -1.73
ATPAF1-204ENST00000474020 A0A0J9YXV3 536 aa4.23□□□□□ -1.73
ATPAF1-204ENST00000474020 IGLV1-51P01701 117 aa4.23□□□□□ -1.73
ATPAF1-204ENST00000474020 P0DMU3 169 aa4.23□□□□□ -1.73
ATPAF1-204ENST00000474020 FAM231AP0DMU4 169 aa4.23□□□□□ -1.73
ATPAF1-204ENST00000474020 FAM231CP0DMU5 169 aa4.23□□□□□ -1.73
ATPAF1-204ENST00000474020 INSL3P51460 131 aa4.23□□□□□ -1.73
ATPAF1-204ENST00000474020 HERVK_113P63121 156 aa4.23□□□□□ -1.73
ATPAF1-204ENST00000474020 ZNRF2Q8NHG8 242 aa4.23□□□□□ -1.73
ATPAF1-204ENST00000474020 RNASE8Q8TDE3 154 aaKnown RBP4.23□□□□□ -1.73
ATPAF1-204ENST00000474020 PHLDA1Q8WV24 401 aaPredicted RBP4.23□□□□□ -1.73
ATPAF1-204ENST00000474020 AMELXQ99217 191 aa4.23□□□□□ -1.73
ATPAF1-204ENST00000474020 UBE2D4Q9Y2X8 147 aa4.23□□□□□ -1.73
ATPAF1-204ENST00000474020 TRGV4A0A0C4DH28 118 aa4.22□□□□□ -1.73
ATPAF1-204ENST00000474020 IGHV1-58A0A0C4DH39 117 aa4.22□□□□□ -1.73
ATPAF1-204ENST00000474020 LOC107984156A0A0G2JMH3 177 aa4.22□□□□□ -1.73
ATPAF1-204ENST00000474020 H7C423 109 aa4.22□□□□□ -1.73
ATPAF1-204ENST00000474020 APOMO95445 188 aa4.22□□□□□ -1.73
ATPAF1-204ENST00000474020 SCGB1C2P0DMR2 95 aa4.22□□□□□ -1.73
ATPAF1-204ENST00000474020 RPL35AP18077 110 aaKnown RBP4.22□□□□□ -1.73
ATPAF1-204ENST00000474020 PSMB2P49721 201 aa4.22□□□□□ -1.73
ATPAF1-204ENST00000474020 TIRAPP58753 221 aa4.22□□□□□ -1.73
ATPAF1-204ENST00000474020 Q1RN00 199 aa4.22□□□□□ -1.73
ATPAF1-204ENST00000474020 ARL17AQ8IVW1 177 aa4.22□□□□□ -1.73
ATPAF1-204ENST00000474020 C1orf158Q8N1D5 194 aa4.22□□□□□ -1.73
ATPAF1-204ENST00000474020 TMEM243Q9BU79 118 aa4.22□□□□□ -1.73
ATPAF1-204ENST00000474020 CHCHD7Q9BUK0 85 aa4.22□□□□□ -1.73
ATPAF1-204ENST00000474020 NOP10Q9NPE3 64 aaKnown RBP4.22□□□□□ -1.73
ATPAF1-204ENST00000474020 PRO1854Q9UHT4 67 aa4.22□□□□□ -1.73
ATPAF1-204ENST00000474020 MUC4Q99102 2169 aa4.21□□□□□ -1.73
ATPAF1-204ENST00000474020 IGHV3-64A0A075B6Q5 118 aa4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 A0A0B4J2C4 111 aa4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 IGHV3-38A0A0C4DH36 116 aa4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 TRBV6-4A0A1B0GX49 114 aa4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 IGKV2-29A2NJV5 120 aaPredicted RBP4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 TIMM17BO60830 172 aa4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 IGHV3-30P01768 117 aa4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 COX6CP09669 75 aa4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 IGHV3-30-3P0DP02 117 aa4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 IGHV3-30-5P0DP03 117 aa4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 IFITM1P13164 125 aa4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 UBE2D1P51668 147 aa4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 C9orf66Q5T8R8 295 aa4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 OPRPNQ99935 248 aaPredicted RBP4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 GTSF1LQ9H1H1 148 aa4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 NDUFA12Q9UI09 145 aa4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 ERG28Q9UKR5 140 aa4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 CSDC2Q9Y534 153 aaKnown RBP4.21□□□□□ -1.74
ATPAF1-204ENST00000474020 A0A0J9YXY3 114 aa4.2□□□□□ -1.74
ATPAF1-204ENST00000474020 GAGE12JA6NER3 117 aa4.2□□□□□ -1.74
ATPAF1-204ENST00000474020 SMIM9A6NGZ8 99 aa4.2□□□□□ -1.74
ATPAF1-204ENST00000474020 GAGE7O76087 117 aa4.2□□□□□ -1.74
ATPAF1-204ENST00000474020 PRSS2P07478 247 aa4.2□□□□□ -1.74
ATPAF1-204ENST00000474020 GAGE12FP0CL80 117 aa4.2□□□□□ -1.74
ATPAF1-204ENST00000474020 GAGE12GP0CL81 117 aa4.2□□□□□ -1.74
ATPAF1-204ENST00000474020 GAGE12IP0CL82 117 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms