RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 RAB5BP61020 215 aa6.62□□□□□ -1.35
SF3A1-207ENST00000471342 MRPS36P82909 103 aaKnown RBP6.62□□□□□ -1.35
SF3A1-207ENST00000471342 ORMDL2Q53FV1 153 aa6.62□□□□□ -1.35
SF3A1-207ENST00000471342 RNASEKQ6P5S7 137 aaKnown RBP6.62□□□□□ -1.35
SF3A1-207ENST00000471342 Q6ZUT4 128 aa6.62□□□□□ -1.35
SF3A1-207ENST00000471342 MAPKAPK5-AS1Q8N8E1 139 aa6.62□□□□□ -1.35
SF3A1-207ENST00000471342 PKD1P98161 4303 aa6.62□□□□□ -1.35
SF3A1-207ENST00000471342 LCE6AA0A183 80 aa6.61□□□□□ -1.35
SF3A1-207ENST00000471342 SNRPEP62304 92 aaKnown RBP6.61□□□□□ -1.35
SF3A1-207ENST00000471342 FA2HQ7L5A8 372 aa6.61□□□□□ -1.35
SF3A1-207ENST00000471342 FAM19A3Q7Z5A8 133 aa6.61□□□□□ -1.35
SF3A1-207ENST00000471342 BAGE3Q86Y29 109 aa6.61□□□□□ -1.35
SF3A1-207ENST00000471342 PACRGQ96M98 296 aaPredicted RBP6.61□□□□□ -1.35
SF3A1-207ENST00000471342 TIMM17AQ99595 171 aa6.61□□□□□ -1.35
SF3A1-207ENST00000471342 DNAH8Q96JB1 4490 aa6.61□□□□□ -1.35
SF3A1-207ENST00000471342 HECTD4Q9Y4D8 3996 aa6.6□□□□□ -1.35
SF3A1-207ENST00000471342 IBA57-AS1B1ANH7 110 aa6.6□□□□□ -1.35
SF3A1-207ENST00000471342 SIVA1O15304 175 aa6.6□□□□□ -1.35
SF3A1-207ENST00000471342 RNASE13Q5GAN3 156 aaKnown RBP6.6□□□□□ -1.35
SF3A1-207ENST00000471342 ERASQ7Z444 233 aa6.6□□□□□ -1.35
SF3A1-207ENST00000471342 BAALCQ8WXS3 180 aa6.6□□□□□ -1.35
SF3A1-207ENST00000471342 HIST1H2BLQ99880 126 aa6.6□□□□□ -1.35
SF3A1-207ENST00000471342 CHCHD5Q9BSY4 110 aa6.6□□□□□ -1.35
SF3A1-207ENST00000471342 EPPK1P58107 5090 aaKnown RBP6.59□□□□□ -1.35
SF3A1-207ENST00000471342 IGHV3-30P01768 117 aa6.59□□□□□ -1.35
SF3A1-207ENST00000471342 IGHV3-33P01772 117 aa6.59□□□□□ -1.35
SF3A1-207ENST00000471342 HBDP02042 147 aa6.59□□□□□ -1.35
SF3A1-207ENST00000471342 IGHV3-30-3P0DP02 117 aa6.59□□□□□ -1.35
SF3A1-207ENST00000471342 IGHV3-30-5P0DP03 117 aa6.59□□□□□ -1.35
SF3A1-207ENST00000471342 BTF3P20290 206 aaKnown RBP6.59□□□□□ -1.35
SF3A1-207ENST00000471342 COX6A2Q02221 97 aa6.59□□□□□ -1.35
SF3A1-207ENST00000471342 SPANXA1Q9NS26 97 aa6.59□□□□□ -1.35
SF3A1-207ENST00000471342 CYSLTR1Q9Y271 337 aa6.59□□□□□ -1.35
SF3A1-207ENST00000471342 IGLV4-69A0A075B6H9 119 aa6.58□□□□□ -1.36
SF3A1-207ENST00000471342 TRAV8-6A0A0B4J262 113 aa6.58□□□□□ -1.36
SF3A1-207ENST00000471342 NBDYA0A0U1RRE5 68 aa6.58□□□□□ -1.36
SF3A1-207ENST00000471342 PRSS29PA6NIE9 313 aa6.58□□□□□ -1.36
SF3A1-207ENST00000471342 NPSP0C0P6 89 aa6.58□□□□□ -1.36
SF3A1-207ENST00000471342 ZNF25P17030 456 aaPredicted RBP6.58□□□□□ -1.36
SF3A1-207ENST00000471342 LINC00269Q8N2A0 174 aa6.58□□□□□ -1.36
SF3A1-207ENST00000471342 ZNF664Q8N3J9 261 aa6.58□□□□□ -1.36
SF3A1-207ENST00000471342 KLK12Q9UKR0 248 aa6.58□□□□□ -1.36
SF3A1-207ENST00000471342 LINC00959A0A1B0GUT2 108 aa6.57□□□□□ -1.36
SF3A1-207ENST00000471342 HSBP1O75506 76 aa6.57□□□□□ -1.36
SF3A1-207ENST00000471342 UBE2D1P51668 147 aa6.57□□□□□ -1.36
SF3A1-207ENST00000471342 OR5A1Q8NGJ0 315 aa6.57□□□□□ -1.36
SF3A1-207ENST00000471342 CST9LQ9H4G1 147 aa6.57□□□□□ -1.36
SF3A1-207ENST00000471342 LRP1BQ9NZR2 4599 aa6.56□□□□□ -1.36
SF3A1-207ENST00000471342 LY6G6CO95867 125 aa6.56□□□□□ -1.36
SF3A1-207ENST00000471342 WFDC2Q14508 124 aa6.56□□□□□ -1.36
SF3A1-207ENST00000471342 LINC00242Q5T6M2 205 aa6.56□□□□□ -1.36
SF3A1-207ENST00000471342 TMEM141Q96I45 108 aa6.56□□□□□ -1.36
SF3A1-207ENST00000471342 SCGB3A1Q96QR1 104 aa6.56□□□□□ -1.36
SF3A1-207ENST00000471342 IGHV3OR16-9A0A0B4J2B5 98 aa6.55□□□□□ -1.36
SF3A1-207ENST00000471342 LRCOL1A6NCL2 159 aa6.55□□□□□ -1.36
SF3A1-207ENST00000471342 TMEM262E9PQX1 116 aa6.55□□□□□ -1.36
SF3A1-207ENST00000471342 RTL8CO15255 209 aa6.55□□□□□ -1.36
SF3A1-207ENST00000471342 C3orf79P0CE67 100 aa6.55□□□□□ -1.36
SF3A1-207ENST00000471342 REG3AQ06141 175 aa6.55□□□□□ -1.36
SF3A1-207ENST00000471342 FOXI1Q12951 378 aa6.55□□□□□ -1.36
SF3A1-207ENST00000471342 ODF1Q14990 250 aa6.55□□□□□ -1.36
SF3A1-207ENST00000471342 IFI27L1Q96BM0 104 aa6.55□□□□□ -1.36
SF3A1-207ENST00000471342 TMA7Q9Y2S6 64 aaKnown RBP6.55□□□□□ -1.36
SF3A1-207ENST00000471342 PKHD1P08F94 4074 aa6.55□□□□□ -1.36
SF3A1-207ENST00000471342 IGLV5-45A0A087WSX0 123 aa6.54□□□□□ -1.36
SF3A1-207ENST00000471342 TRAV12-1A0A0B4J245 112 aa6.54□□□□□ -1.36
SF3A1-207ENST00000471342 FABP4P15090 132 aa6.54□□□□□ -1.36
SF3A1-207ENST00000471342 CLPSL2Q6UWE3 100 aa6.54□□□□□ -1.36
SF3A1-207ENST00000471342 A0A0J9YXV3 536 aa6.53□□□□□ -1.36
SF3A1-207ENST00000471342 LOC105371267A0A1B0GV96 52 aa6.53□□□□□ -1.36
SF3A1-207ENST00000471342 K7EP13 123 aa6.53□□□□□ -1.36
SF3A1-207ENST00000471342 M0R2N4 97 aa6.53□□□□□ -1.36
SF3A1-207ENST00000471342 LEPROTL1O95214 131 aa6.53□□□□□ -1.36
SF3A1-207ENST00000471342 ANGP03950 147 aaKnown RBP6.53□□□□□ -1.36
SF3A1-207ENST00000471342 LINC01545Q5VT33 79 aa6.53□□□□□ -1.36
SF3A1-207ENST00000471342 NFE4Q86UQ8 179 aa6.53□□□□□ -1.36
SF3A1-207ENST00000471342 A0A087WX48 190 aa6.52□□□□□ -1.37
SF3A1-207ENST00000471342 LINC01549A6NIU2 74 aa6.52□□□□□ -1.37
SF3A1-207ENST00000471342 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.52□□□□□ -1.37
SF3A1-207ENST00000471342 SYS1-DBNDD2H3BUS1 97 aa6.52□□□□□ -1.37
SF3A1-207ENST00000471342 UBE2L6O14933 153 aa6.52□□□□□ -1.37
SF3A1-207ENST00000471342 ATP5LO75964 103 aa6.52□□□□□ -1.37
SF3A1-207ENST00000471342 IGLC3P0DOY3 106 aa6.52□□□□□ -1.37
SF3A1-207ENST00000471342 PMVKQ15126 192 aa6.52□□□□□ -1.37
SF3A1-207ENST00000471342 UBE2DNLQ8IWF7 75 aa6.52□□□□□ -1.37
SF3A1-207ENST00000471342 NTN5Q8WTR8 489 aaPredicted RBP6.52□□□□□ -1.37
SF3A1-207ENST00000471342 UBE2WQ96B02 151 aa6.52□□□□□ -1.37
SF3A1-207ENST00000471342 TMEM18Q96B42 140 aa6.52□□□□□ -1.37
SF3A1-207ENST00000471342 MRPL35Q9NZE8 188 aaKnown RBP6.52□□□□□ -1.37
SF3A1-207ENST00000471342 C11orf86A6NJI1 115 aa6.51□□□□□ -1.37
SF3A1-207ENST00000471342 SLPIP03973 132 aa6.51□□□□□ -1.37
SF3A1-207ENST00000471342 PKIAP61925 76 aa6.51□□□□□ -1.37
SF3A1-207ENST00000471342 AMMECR1LQ6DCA0 310 aa6.51□□□□□ -1.37
SF3A1-207ENST00000471342 CDPF1Q6NVV7 123 aa6.51□□□□□ -1.37
SF3A1-207ENST00000471342 C15orf56Q8N910 161 aa6.51□□□□□ -1.37
SF3A1-207ENST00000471342 CHCHD10Q8WYQ3 142 aaPredicted RBP6.51□□□□□ -1.37
SF3A1-207ENST00000471342 PMCHL2Q9BQD1 86 aa6.51□□□□□ -1.37
SF3A1-207ENST00000471342 VCX2Q9H322 139 aa6.51□□□□□ -1.37
SF3A1-207ENST00000471342 IGLV10-54A0A075B6I4 117 aa6.5□□□□□ -1.37
SF3A1-207ENST00000471342 TRAV13-1A0A0B4J241 112 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms