RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 OR5A1Q8NGJ0 315 aa13.19□□□□□ -0.3
NPHP4-206ENST00000468253 TIMM21Q9BVV7 248 aa13.19□□□□□ -0.3
NPHP4-206ENST00000468253 CDC42SE2Q9NRR3 84 aa13.19□□□□□ -0.3
NPHP4-206ENST00000468253 KIAA1109Q2LD37 5005 aa13.18□□□□□ -0.3
NPHP4-206ENST00000468253 CDK2AP2O75956 126 aa13.17□□□□□ -0.3
NPHP4-206ENST00000468253 HLA-DQA1P01909 254 aa13.17□□□□□ -0.3
NPHP4-206ENST00000468253 GCSHP23434 173 aa13.17□□□□□ -0.3
NPHP4-206ENST00000468253 ZNF664Q8N3J9 261 aa13.17□□□□□ -0.3
NPHP4-206ENST00000468253 IGLV5-52A0A0A0MRZ9 124 aa13.16□□□□□ -0.3
NPHP4-206ENST00000468253 LECT2O14960 151 aa13.16□□□□□ -0.3
NPHP4-206ENST00000468253 RAB5AP20339 215 aa13.16□□□□□ -0.3
NPHP4-206ENST00000468253 DGAT2L7PQ6IED9 249 aa13.16□□□□□ -0.3
NPHP4-206ENST00000468253 MAP1LC3AQ9H492 121 aa13.16□□□□□ -0.3
NPHP4-206ENST00000468253 UBE2D4Q9Y2X8 147 aa13.15□□□□□ -0.3
NPHP4-206ENST00000468253 IGLV10-54A0A075B6I4 117 aa13.14□□□□□ -0.31
NPHP4-206ENST00000468253 K7EMI3 77 aa13.14□□□□□ -0.31
NPHP4-206ENST00000468253 CCL25O15444 150 aa13.14□□□□□ -0.31
NPHP4-206ENST00000468253 FUSP35637 526 aaKnown RBP eCLIP13.14□□□□□ -0.31
NPHP4-206ENST00000468253 Q8N8P6 123 aa13.14□□□□□ -0.31
NPHP4-206ENST00000468253 MT-ND6P03923 174 aa13.13□□□□□ -0.31
NPHP4-206ENST00000468253 HERC2O95714 4834 aa13.13□□□□□ -0.31
NPHP4-206ENST00000468253 USP17L23D6RBM5 183 aa13.12□□□□□ -0.31
NPHP4-206ENST00000468253 RYR1P21817 5038 aa13.11□□□□□ -0.31
NPHP4-206ENST00000468253 LOC389332A0A1B0GUA5 103 aa13.11□□□□□ -0.31
NPHP4-206ENST00000468253 LINC00959A0A1B0GUT2 108 aa13.11□□□□□ -0.31
NPHP4-206ENST00000468253 KRTAP10-1P60331 282 aa13.11□□□□□ -0.31
NPHP4-206ENST00000468253 CHCHD10Q8WYQ3 142 aaPredicted RBP13.11□□□□□ -0.31
NPHP4-206ENST00000468253 NXT2Q9NPJ8 142 aaKnown RBP13.11□□□□□ -0.31
NPHP4-206ENST00000468253 SPANXA1Q9NS26 97 aa13.11□□□□□ -0.31
NPHP4-206ENST00000468253 IGKV3OR2-268A0A0C4DH90 116 aa13.1□□□□□ -0.31
NPHP4-206ENST00000468253 CFAP161Q6P656 301 aa13.1□□□□□ -0.31
NPHP4-206ENST00000468253 GAGE12HA6NDE8 117 aa13.09□□□□□ -0.31
NPHP4-206ENST00000468253 MRPS36P82909 103 aaKnown RBP13.09□□□□□ -0.31
NPHP4-206ENST00000468253 SS18Q15532 418 aa13.09□□□□□ -0.31
NPHP4-206ENST00000468253 KIAA1644Q3SXP7 199 aa13.09□□□□□ -0.31
NPHP4-206ENST00000468253 PYGO1Q9Y3Y4 419 aa13.09□□□□□ -0.31
NPHP4-206ENST00000468253 APOBP04114 4563 aaKnown RBP13.08□□□□□ -0.31
NPHP4-206ENST00000468253 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.08□□□□□ -0.32
NPHP4-206ENST00000468253 C1orf196B1AJZ1 125 aa13.08□□□□□ -0.32
NPHP4-206ENST00000468253 G0S2P27469 103 aa13.08□□□□□ -0.32
NPHP4-206ENST00000468253 RPL39P62891 51 aaKnown RBP13.08□□□□□ -0.32
NPHP4-206ENST00000468253 ORMDL2Q53FV1 153 aa13.08□□□□□ -0.32
NPHP4-206ENST00000468253 PRSS1P07477 247 aa13.07□□□□□ -0.32
NPHP4-206ENST00000468253 FABP9Q0Z7S8 132 aa13.07□□□□□ -0.32
NPHP4-206ENST00000468253 SLC7A5P1Q8MH63 180 aa13.07□□□□□ -0.32
NPHP4-206ENST00000468253 ALKBH7Q9BT30 221 aaPredicted RBP13.07□□□□□ -0.32
NPHP4-206ENST00000468253 FOXI1Q12951 378 aa13.06□□□□□ -0.32
NPHP4-206ENST00000468253 CD164L2Q6UWJ8 174 aa13.06□□□□□ -0.32
NPHP4-206ENST00000468253 FAM104AQ969W3 186 aa13.06□□□□□ -0.32
NPHP4-206ENST00000468253 MRPL18Q9H0U6 180 aaKnown RBP13.06□□□□□ -0.32
NPHP4-206ENST00000468253 HSPG2P98160 4391 aa13.06□□□□□ -0.32
NPHP4-206ENST00000468253 TGIF2-C20orf24A0A0A6YYL0 155 aa13.05□□□□□ -0.32
NPHP4-206ENST00000468253 IFI27P40305 119 aaPredicted RBP13.05□□□□□ -0.32
NPHP4-206ENST00000468253 DNAH8Q96JB1 4490 aa13.04□□□□□ -0.32
NPHP4-206ENST00000468253 NPSP0C0P6 89 aa13.04□□□□□ -0.32
NPHP4-206ENST00000468253 XCL1P47992 114 aa13.03□□□□□ -0.32
NPHP4-206ENST00000468253 Q6ZUT4 128 aa13.03□□□□□ -0.32
NPHP4-206ENST00000468253 PRSS3P2Q8NHM4 247 aa13.03□□□□□ -0.32
NPHP4-206ENST00000468253 YPEL4Q96NS1 127 aa13.03□□□□□ -0.32
NPHP4-206ENST00000468253 CYSLTR1Q9Y271 337 aa13.03□□□□□ -0.32
NPHP4-206ENST00000468253 LINC01546A6NGU7 62 aa13.02□□□□□ -0.33
NPHP4-206ENST00000468253 XGP55808 180 aa13.02□□□□□ -0.33
NPHP4-206ENST00000468253 CNBPP62633 177 aaKnown RBP13.02□□□□□ -0.33
NPHP4-206ENST00000468253 TRAPPC1Q9Y5R8 145 aa13.02□□□□□ -0.33
NPHP4-206ENST00000468253 hDV102S1A0JD36 115 aa13.01□□□□□ -0.33
NPHP4-206ENST00000468253 C2orf66Q6UXQ4 117 aa13.01□□□□□ -0.33
NPHP4-206ENST00000468253 C9orf163Q8N9P6 203 aa13.01□□□□□ -0.33
NPHP4-206ENST00000468253 SMCO4Q9NRQ5 59 aa13.01□□□□□ -0.33
NPHP4-206ENST00000468253 AP5S1Q9NUS5 200 aa13.01□□□□□ -0.33
NPHP4-206ENST00000468253 TRAV13-1A0A0B4J241 112 aa13□□□□□ -0.33
NPHP4-206ENST00000468253 LINC01549A6NIU2 74 aa13□□□□□ -0.33
NPHP4-206ENST00000468253 Q6ZSA8 131 aa13□□□□□ -0.33
NPHP4-206ENST00000468253 C15orf56Q8N910 161 aa13□□□□□ -0.33
NPHP4-206ENST00000468253 OPRPNQ99935 248 aaPredicted RBP13□□□□□ -0.33
NPHP4-206ENST00000468253 IGHV1-58A0A0C4DH39 117 aa12.99□□□□□ -0.33
NPHP4-206ENST00000468253 RNASE13Q5GAN3 156 aaKnown RBP12.99□□□□□ -0.33
NPHP4-206ENST00000468253 IGLV4-3A0A075B6K6 122 aa12.98□□□□□ -0.33
NPHP4-206ENST00000468253 GVQW2A0A096LPI5 108 aaPredicted RBP12.98□□□□□ -0.33
NPHP4-206ENST00000468253 IGIPA6NJ69 53 aa12.98□□□□□ -0.33
NPHP4-206ENST00000468253 TMEM141Q96I45 108 aa12.98□□□□□ -0.33
NPHP4-206ENST00000468253 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.97□□□□□ -0.33
NPHP4-206ENST00000468253 SLPIP03973 132 aa12.97□□□□□ -0.33
NPHP4-206ENST00000468253 TOMM6Q96B49 74 aa12.97□□□□□ -0.33
NPHP4-206ENST00000468253 FAM30AQ9NZY2 134 aa12.97□□□□□ -0.33
NPHP4-206ENST00000468253 COX7A2LO14548 114 aa12.96□□□□□ -0.33
NPHP4-206ENST00000468253 PAPPA-AS1Q5QFB9 102 aa12.96□□□□□ -0.33
NPHP4-206ENST00000468253 AMELXQ99217 191 aa12.95□□□□□ -0.34
NPHP4-206ENST00000468253 TIMM17AQ99595 171 aa12.95□□□□□ -0.34
NPHP4-206ENST00000468253 VCX2Q9H322 139 aa12.95□□□□□ -0.34
NPHP4-206ENST00000468253 IFITM10A6NMD0 228 aa12.94□□□□□ -0.34
NPHP4-206ENST00000468253 LINC01620Q4KN68 170 aa12.94□□□□□ -0.34
NPHP4-206ENST00000468253 Q6ZN92 141 aa12.94□□□□□ -0.34
NPHP4-206ENST00000468253 TEX43Q6ZNM6 134 aa12.94□□□□□ -0.34
NPHP4-206ENST00000468253 SDIM1Q6ZPB5 146 aa12.94□□□□□ -0.34
NPHP4-206ENST00000468253 FA2HQ7L5A8 372 aa12.94□□□□□ -0.34
NPHP4-206ENST00000468253 ERASQ7Z444 233 aa12.94□□□□□ -0.34
NPHP4-206ENST00000468253 Q8N1X5 172 aa12.94□□□□□ -0.34
NPHP4-206ENST00000468253 IGHV3OR16-9A0A0B4J2B5 98 aa12.93□□□□□ -0.34
NPHP4-206ENST00000468253 MALP21145 153 aa12.93□□□□□ -0.34
NPHP4-206ENST00000468253 CBLN2Q8IUK8 224 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 133.3 ms