RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 PRB3Q04118 309 aaPredicted RBP1.94□□□□□ -2.1
VPS41-210ENST00000462429 JOSD1Q15040 202 aaPredicted RBP1.94□□□□□ -2.1
VPS41-210ENST00000462429 SDIM1Q6ZPB5 146 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 TCF24Q7RTU0 167 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 Q86TA4 180 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 GPHB5Q86YW7 130 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 DYNAPQ8N1N2 210 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 EXOC3-AS1Q8N2X6 119 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 OR4X2Q8NGF9 303 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 HIST1H2BLQ99880 126 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 HSPB9Q9BQS6 159 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 HSPB8Q9UJY1 196 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 VPREB3Q9UKI3 123 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 CEP295Q9C0D2 2601 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 SPTBN4Q9H254 2564 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 DMXL2Q8TDJ6 3036 aa1.93□□□□□ -2.1
VPS41-210ENST00000462429 IGF2RP11717 2491 aa1.93□□□□□ -2.1
VPS41-210ENST00000462429 AKAP13Q12802 2813 aa1.93□□□□□ -2.1
VPS41-210ENST00000462429 TRAV21A0A0B4J279 112 aa1.93□□□□□ -2.1
VPS41-210ENST00000462429 C19orf71A6NCJ1 209 aa1.93□□□□□ -2.1
VPS41-210ENST00000462429 ZNF705FA8MVS1 300 aaPredicted RBP1.93□□□□□ -2.1
VPS41-210ENST00000462429 G3V318 75 aa1.93□□□□□ -2.1
VPS41-210ENST00000462429 K7EMI3 77 aa1.93□□□□□ -2.1
VPS41-210ENST00000462429 M0R2Z0 102 aa1.93□□□□□ -2.1
VPS41-210ENST00000462429 SPINK4O60575 86 aa1.93□□□□□ -2.1
VPS41-210ENST00000462429 GPX1P07203 203 aa1.93□□□□□ -2.1
VPS41-210ENST00000462429 ZNF705DP0CH99 300 aaPredicted RBP1.93□□□□□ -2.1
VPS41-210ENST00000462429 ZNF705BP0CI00 300 aaPredicted RBP1.93□□□□□ -2.1
VPS41-210ENST00000462429 SMIM17P0DL12 118 aa1.93□□□□□ -2.1
VPS41-210ENST00000462429 S100A4P26447 101 aaKnown RBP1.93□□□□□ -2.1
VPS41-210ENST00000462429 GNG5P63218 68 aa1.93□□□□□ -2.1
VPS41-210ENST00000462429 MRPL54Q6P161 138 aaKnown RBP1.93□□□□□ -2.1
VPS41-210ENST00000462429 OR10AG1Q8NH19 301 aa1.93□□□□□ -2.1
VPS41-210ENST00000462429 NXT2Q9NPJ8 142 aaKnown RBP1.93□□□□□ -2.1
VPS41-210ENST00000462429 MRPL36Q9P0J6 103 aaKnown RBP1.93□□□□□ -2.1
VPS41-210ENST00000462429 CFAP47Q6ZTR5 3102 aa1.93□□□□□ -2.1
VPS41-210ENST00000462429 BOD1L1Q8NFC6 3051 aa1.93□□□□□ -2.1
VPS41-210ENST00000462429 DSPP15924 2871 aaKnown RBP1.92□□□□□ -2.1
VPS41-210ENST00000462429 ARHGAP32A7KAX9 2087 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 ABCA1O95477 2261 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 TRAV8-1A0A0A6YYK1 113 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 TRAV2A0A0B4J234 112 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 GRIFINA4D1Z8 144 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 M0R381 172 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 M0R3E3 92 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 LEPROTL1O95214 131 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 LGALS1P09382 135 aaKnown RBP1.92□□□□□ -2.1
VPS41-210ENST00000462429 GZMBP10144 247 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 PSMB8P28062 276 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 CKS2P33552 79 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 ASIPP42127 132 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 TCL1AP56279 114 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 BLCAPP62952 87 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 DEFB112Q30KQ8 113 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 MRPL51Q4U2R6 128 aaKnown RBP1.92□□□□□ -2.1
VPS41-210ENST00000462429 PYY3Q5JQD4 70 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 SPANXN1Q5VSR9 72 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 LYZL1Q6UWQ5 148 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 ZNF705AQ6ZN79 300 aaPredicted RBP1.92□□□□□ -2.1
VPS41-210ENST00000462429 C18orf32Q8TCD1 76 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 ZNF418Q8TF45 676 aaPredicted RBP1.92□□□□□ -2.1
VPS41-210ENST00000462429 ZC2HC1AQ96GY0 325 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 ODF3Q96PU9 254 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 TMEM70Q9BUB7 260 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 VAMP8Q9BV40 100 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 RHPN1-AS1Q9BWJ2 59 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 CNFNQ9BYD5 112 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 TMEM191AQ9H0A3 160 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 MAP1LC3AQ9H492 121 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 SPANXB1Q9NS25 103 aaPredicted RBP1.92□□□□□ -2.1
VPS41-210ENST00000462429 SMPXQ9UHP9 88 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 NAV3Q8IVL0 2385 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 ATMQ13315 3056 aa1.92□□□□□ -2.1
VPS41-210ENST00000462429 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.91□□□□□ -2.1
VPS41-210ENST00000462429 ZFHX4Q86UP3 3567 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 ADGRG4Q8IZF6 3080 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 IGKV2-40A0A087WW87 121 aaPredicted RBP1.91□□□□□ -2.1
VPS41-210ENST00000462429 CLPSL1A2RUU4 121 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 OR4C46A6NHA9 309 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 IGKV2D-40P01614 121 aaPredicted RBP1.91□□□□□ -2.1
VPS41-210ENST00000462429 PRB1P04280 392 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 DDTP30046 118 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 KRTDAPP60985 99 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 KRTAP13-1Q8IUC0 172 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 Q8N2B8 174 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 OR11H1Q8NG94 326 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 MYOZ3Q8TDC0 251 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 C4orf3Q8WVX3 66 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 PRELID3AQ96N28 172 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 PMCHL2Q9BQD1 86 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 AGPAT4-IT1Q9H0P7 198 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 UQCR10Q9UDW1 63 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 CACNA1AO00555 2505 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 NCOR2Q9Y618 2525 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 ASPMQ8IZT6 3477 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 DCHS1Q96JQ0 3298 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 ACACBO00763 2458 aa1.91□□□□□ -2.1
VPS41-210ENST00000462429 MED13LQ71F56 2210 aa1.9□□□□□ -2.1
VPS41-210ENST00000462429 SPTAN1Q13813 2472 aaKnown RBP1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms