RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 WFDC2Q14508 124 aa15.13■□□□□ 0.01
CCDC28B-203ENST00000461819 DGAT2L7PQ6IED9 249 aa15.13■□□□□ 0.01
CCDC28B-203ENST00000461819 Q8N814 137 aa15.13■□□□□ 0.01
CCDC28B-203ENST00000461819 PGPEP1Q9NXJ5 209 aa15.13■□□□□ 0.01
CCDC28B-203ENST00000461819 TGIF2-C20orf24A0A0A6YYL0 155 aa15.12■□□□□ 0.01
CCDC28B-203ENST00000461819 FUSP35637 526 aaKnown RBP eCLIP15.12■□□□□ 0.01
CCDC28B-203ENST00000461819 PRSS47A8MTI9 375 aa15.11■□□□□ 0.01
CCDC28B-203ENST00000461819 CDPF1Q6NVV7 123 aa15.11■□□□□ 0.01
CCDC28B-203ENST00000461819 MRPL18Q9H0U6 180 aaKnown RBP15.1■□□□□ 0.01
CCDC28B-203ENST00000461819 UBE2D4Q9Y2X8 147 aa15.1■□□□□ 0.01
CCDC28B-203ENST00000461819 DNAH5Q8TE73 4624 aa15.09■□□□□ 0.01
CCDC28B-203ENST00000461819 Q8N8P6 123 aa15.09■□□□□ 0.01
CCDC28B-203ENST00000461819 RPL39P62891 51 aaKnown RBP15.08■□□□□ 0
CCDC28B-203ENST00000461819 FABP9Q0Z7S8 132 aa15.08■□□□□ 0
CCDC28B-203ENST00000461819 ZNF664Q8N3J9 261 aa15.08■□□□□ 0
CCDC28B-203ENST00000461819 NTN5Q8WTR8 489 aaPredicted RBP15.08■□□□□ 0
CCDC28B-203ENST00000461819 CDC42SE2Q9NRR3 84 aa15.08■□□□□ 0
CCDC28B-203ENST00000461819 IGLV5-52A0A0A0MRZ9 124 aa15.07■□□□□ 0
CCDC28B-203ENST00000461819 KRTAP26-1Q6PEX3 210 aa15.07■□□□□ 0
CCDC28B-203ENST00000461819 TIMM21Q9BVV7 248 aa15.07■□□□□ 0
CCDC28B-203ENST00000461819 NXT2Q9NPJ8 142 aaKnown RBP15.07■□□□□ 0
CCDC28B-203ENST00000461819 CSDC2Q9Y534 153 aaKnown RBP15.07■□□□□ 0
CCDC28B-203ENST00000461819 IGLV2-33A0A075B6J2 118 aaPredicted RBP15.05■□□□□ -0
CCDC28B-203ENST00000461819 USP17L23D6RBM5 183 aa15.05■□□□□ -0
CCDC28B-203ENST00000461819 C14orf177Q52M58 125 aa15.05■□□□□ -0
CCDC28B-203ENST00000461819 SPANXA1Q9NS26 97 aa15.05■□□□□ -0
CCDC28B-203ENST00000461819 TRAPPC1Q9Y5R8 145 aa15.05■□□□□ -0
CCDC28B-203ENST00000461819 IFI27P40305 119 aaPredicted RBP15.04■□□□□ -0
CCDC28B-203ENST00000461819 Q6ZUT4 128 aa15.04■□□□□ -0
CCDC28B-203ENST00000461819 CHCHD10Q8WYQ3 142 aaPredicted RBP15.04■□□□□ -0
CCDC28B-203ENST00000461819 ALKBH7Q9BT30 221 aaPredicted RBP15.04■□□□□ -0
CCDC28B-203ENST00000461819 GAGE12HA6NDE8 117 aa15.03■□□□□ -0
CCDC28B-203ENST00000461819 K7EMI3 77 aa15.03■□□□□ -0
CCDC28B-203ENST00000461819 ORMDL2Q53FV1 153 aa15.03■□□□□ -0
CCDC28B-203ENST00000461819 RNASE13Q5GAN3 156 aaKnown RBP15.03■□□□□ -0
CCDC28B-203ENST00000461819 CBLN2Q8IUK8 224 aa15.03■□□□□ -0
CCDC28B-203ENST00000461819 SMCO4Q9NRQ5 59 aa15.03■□□□□ -0
CCDC28B-203ENST00000461819 LINC00959A0A1B0GUT2 108 aa15.02■□□□□ -0
CCDC28B-203ENST00000461819 SS18Q15532 418 aa15.02■□□□□ -0
CCDC28B-203ENST00000461819 PRSS3P2Q8NHM4 247 aa15.02■□□□□ -0
CCDC28B-203ENST00000461819 LRP1BQ9NZR2 4599 aa15.01□□□□□ -0.01
CCDC28B-203ENST00000461819 GCSHP23434 173 aa15□□□□□ -0.01
CCDC28B-203ENST00000461819 XCL1P47992 114 aa15□□□□□ -0.01
CCDC28B-203ENST00000461819 YPEL4Q96NS1 127 aa15□□□□□ -0.01
CCDC28B-203ENST00000461819 CYSLTR1Q9Y271 337 aa15□□□□□ -0.01
CCDC28B-203ENST00000461819 CCL25O15444 150 aa14.99□□□□□ -0.01
CCDC28B-203ENST00000461819 C2orf66Q6UXQ4 117 aa14.98□□□□□ -0.01
CCDC28B-203ENST00000461819 TRAV13-1A0A0B4J241 112 aa14.97□□□□□ -0.01
CCDC28B-203ENST00000461819 MRPS36P82909 103 aaKnown RBP14.97□□□□□ -0.01
CCDC28B-203ENST00000461819 OPRPNQ99935 248 aaPredicted RBP14.97□□□□□ -0.01
CCDC28B-203ENST00000461819 C1orf196B1AJZ1 125 aa14.96□□□□□ -0.01
CCDC28B-203ENST00000461819 G0S2P27469 103 aa14.96□□□□□ -0.01
CCDC28B-203ENST00000461819 PYGO1Q9Y3Y4 419 aa14.96□□□□□ -0.01
CCDC28B-203ENST00000461819 KIAA1109Q2LD37 5005 aa14.95□□□□□ -0.02
CCDC28B-203ENST00000461819 PRSS1P07477 247 aa14.95□□□□□ -0.02
CCDC28B-203ENST00000461819 FOXI1Q12951 378 aa14.95□□□□□ -0.02
CCDC28B-203ENST00000461819 FA2HQ7L5A8 372 aa14.95□□□□□ -0.02
CCDC28B-203ENST00000461819 KRTAP10-1P60331 282 aa14.94□□□□□ -0.02
CCDC28B-203ENST00000461819 CFAP161Q6P656 301 aa14.94□□□□□ -0.02
CCDC28B-203ENST00000461819 hDV102S1A0JD36 115 aa14.93□□□□□ -0.02
CCDC28B-203ENST00000461819 IFITM10A6NMD0 228 aa14.93□□□□□ -0.02
CCDC28B-203ENST00000461819 CD164L2Q6UWJ8 174 aa14.93□□□□□ -0.02
CCDC28B-203ENST00000461819 FAM104AQ969W3 186 aa14.93□□□□□ -0.02
CCDC28B-203ENST00000461819 TMEM141Q96I45 108 aa14.93□□□□□ -0.02
CCDC28B-203ENST00000461819 IGLV4-3A0A075B6K6 122 aa14.92□□□□□ -0.02
CCDC28B-203ENST00000461819 CDK2AP2O75956 126 aa14.91□□□□□ -0.02
CCDC28B-203ENST00000461819 Q6ZN92 141 aa14.91□□□□□ -0.02
CCDC28B-203ENST00000461819 C15orf56Q8N910 161 aa14.91□□□□□ -0.02
CCDC28B-203ENST00000461819 C18orf32Q8TCD1 76 aa14.91□□□□□ -0.02
CCDC28B-203ENST00000461819 LINC01546A6NGU7 62 aa14.9□□□□□ -0.02
CCDC28B-203ENST00000461819 TEX43Q6ZNM6 134 aa14.9□□□□□ -0.02
CCDC28B-203ENST00000461819 TOMM6Q96B49 74 aa14.9□□□□□ -0.02
CCDC28B-203ENST00000461819 AP5S1Q9NUS5 200 aa14.9□□□□□ -0.02
CCDC28B-203ENST00000461819 LINC01620Q4KN68 170 aa14.89□□□□□ -0.03
CCDC28B-203ENST00000461819 APOBP04114 4563 aaKnown RBP14.88□□□□□ -0.03
CCDC28B-203ENST00000461819 COX7A2LO14548 114 aa14.88□□□□□ -0.03
CCDC28B-203ENST00000461819 HIGD2BQ4VC39 106 aa14.88□□□□□ -0.03
CCDC28B-203ENST00000461819 C2orf88Q9BSF0 95 aa14.88□□□□□ -0.03
CCDC28B-203ENST00000461819 RYR1P21817 5038 aa14.88□□□□□ -0.03
CCDC28B-203ENST00000461819 IGIPA6NJ69 53 aa14.87□□□□□ -0.03
CCDC28B-203ENST00000461819 NPSP0C0P6 89 aa14.87□□□□□ -0.03
CCDC28B-203ENST00000461819 MALP21145 153 aa14.87□□□□□ -0.03
CCDC28B-203ENST00000461819 IGHV1-58A0A0C4DH39 117 aa14.86□□□□□ -0.03
CCDC28B-203ENST00000461819 LINC01549A6NIU2 74 aa14.86□□□□□ -0.03
CCDC28B-203ENST00000461819 PAPPA-AS1Q5QFB9 102 aa14.86□□□□□ -0.03
CCDC28B-203ENST00000461819 SCGB3A1Q96QR1 104 aa14.86□□□□□ -0.03
CCDC28B-203ENST00000461819 TIMM17AQ99595 171 aa14.86□□□□□ -0.03
CCDC28B-203ENST00000461819 VCX2Q9H322 139 aa14.86□□□□□ -0.03
CCDC28B-203ENST00000461819 GVQW2A0A096LPI5 108 aaPredicted RBP14.84□□□□□ -0.03
CCDC28B-203ENST00000461819 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.84□□□□□ -0.03
CCDC28B-203ENST00000461819 LINC00614P0C842 121 aa14.84□□□□□ -0.03
CCDC28B-203ENST00000461819 RAB5BP61020 215 aa14.84□□□□□ -0.03
CCDC28B-203ENST00000461819 CNBPP62633 177 aaKnown RBP14.84□□□□□ -0.03
CCDC28B-203ENST00000461819 ERASQ7Z444 233 aa14.84□□□□□ -0.03
CCDC28B-203ENST00000461819 C5orf38Q86SI9 138 aa14.84□□□□□ -0.03
CCDC28B-203ENST00000461819 ZC2HC1BQ5TFG8 222 aa14.83□□□□□ -0.04
CCDC28B-203ENST00000461819 HERC2O95714 4834 aa14.83□□□□□ -0.04
CCDC28B-203ENST00000461819 LINC00173Q6ZV60 143 aa14.82□□□□□ -0.04
CCDC28B-203ENST00000461819 URB1-AS1Q96HZ7 61 aa14.82□□□□□ -0.04
CCDC28B-203ENST00000461819 AMELXQ99217 191 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms