RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 USP9YO00507 2555 aaPredicted RBP8.47□□□□□ -1.05
CPSF3-202ENST00000460593 UQCRQO14949 82 aa8.47□□□□□ -1.05
CPSF3-202ENST00000460593 DGAT2L7PQ6IED9 249 aa8.47□□□□□ -1.05
CPSF3-202ENST00000460593 KIR2DL5BQ8NHK3 375 aa8.47□□□□□ -1.05
CPSF3-202ENST00000460593 CHD8Q9HCK8 2581 aa8.46□□□□□ -1.05
CPSF3-202ENST00000460593 CFHR3Q02985 330 aa8.46□□□□□ -1.05
CPSF3-202ENST00000460593 FBXL19-AS1Q494R0 122 aa8.46□□□□□ -1.05
CPSF3-202ENST00000460593 DNAJC30Q96LL9 226 aa8.46□□□□□ -1.05
CPSF3-202ENST00000460593 NDUFA1O15239 70 aa8.46□□□□□ -1.06
CPSF3-202ENST00000460593 BEAN1Q3B7T3 259 aa8.46□□□□□ -1.06
CPSF3-202ENST00000460593 IGHV3OR16-12A0A075B7B8 117 aa8.45□□□□□ -1.06
CPSF3-202ENST00000460593 LINC00526Q96FQ7 95 aa8.45□□□□□ -1.06
CPSF3-202ENST00000460593 CIRBPQ14011 172 aaKnown RBP8.45□□□□□ -1.06
CPSF3-202ENST00000460593 PRIMA1Q86XR5 153 aa8.45□□□□□ -1.06
CPSF3-202ENST00000460593 K7EQG2 157 aa8.45□□□□□ -1.06
CPSF3-202ENST00000460593 PIMREGQ9BSJ6 248 aa8.45□□□□□ -1.06
CPSF3-202ENST00000460593 C14orf132Q9NPU4 83 aa8.45□□□□□ -1.06
CPSF3-202ENST00000460593 C2orf48Q96LS8 159 aa8.44□□□□□ -1.06
CPSF3-202ENST00000460593 WNK1Q9H4A3 2382 aa8.44□□□□□ -1.06
CPSF3-202ENST00000460593 MYO9AB2RTY4 2548 aa8.44□□□□□ -1.06
CPSF3-202ENST00000460593 ACYP1P07311 99 aa8.44□□□□□ -1.06
CPSF3-202ENST00000460593 LINC00242Q5T6M2 205 aa8.44□□□□□ -1.06
CPSF3-202ENST00000460593 IMUPQ9GZP8 106 aa8.44□□□□□ -1.06
CPSF3-202ENST00000460593 IGHV4-61A0A0C4DH41 118 aa8.43□□□□□ -1.06
CPSF3-202ENST00000460593 IGLV1-40P01703 118 aa8.43□□□□□ -1.06
CPSF3-202ENST00000460593 ATP5G1P05496 136 aa8.43□□□□□ -1.06
CPSF3-202ENST00000460593 COX7CP15954 63 aa8.43□□□□□ -1.06
CPSF3-202ENST00000460593 SPANXA1Q9NS26 97 aa8.43□□□□□ -1.06
CPSF3-202ENST00000460593 JMJD1CQ15652 2540 aa8.43□□□□□ -1.06
CPSF3-202ENST00000460593 DEFB131AP59861 70 aa8.43□□□□□ -1.06
CPSF3-202ENST00000460593 A0A087WYN8 130 aa8.42□□□□□ -1.06
CPSF3-202ENST00000460593 RBMY1BA6NDE4 496 aaKnown RBP8.42□□□□□ -1.06
CPSF3-202ENST00000460593 RBMY1EA6NEQ0 496 aaKnown RBP8.42□□□□□ -1.06
CPSF3-202ENST00000460593 RBMY1DP0C7P1 496 aaKnown RBP8.42□□□□□ -1.06
CPSF3-202ENST00000460593 C5orf38Q86SI9 138 aa8.42□□□□□ -1.06
CPSF3-202ENST00000460593 POLQO75417 2590 aa8.42□□□□□ -1.06
CPSF3-202ENST00000460593 IGKV3OR2-268A0A0C4DH90 116 aa8.42□□□□□ -1.06
CPSF3-202ENST00000460593 TIMM17BO60830 172 aa8.42□□□□□ -1.06
CPSF3-202ENST00000460593 IGHV3-53P01767 116 aa8.42□□□□□ -1.06
CPSF3-202ENST00000460593 AKAP9Q99996 3911 aa8.42□□□□□ -1.06
CPSF3-202ENST00000460593 A6NDX4 124 aa8.41□□□□□ -1.06
CPSF3-202ENST00000460593 SMIM1B2RUZ4 78 aa8.41□□□□□ -1.06
CPSF3-202ENST00000460593 SLPIP03973 132 aa8.41□□□□□ -1.06
CPSF3-202ENST00000460593 DSCR8Q96T75 97 aa8.41□□□□□ -1.06
CPSF3-202ENST00000460593 SETD2Q9BYW2 2564 aaPredicted RBP8.41□□□□□ -1.06
CPSF3-202ENST00000460593 DEFB136Q30KP8 78 aa8.41□□□□□ -1.06
CPSF3-202ENST00000460593 A0A1B0GX51 115 aa8.4□□□□□ -1.06
CPSF3-202ENST00000460593 PEMTQ9UBM1 199 aa8.4□□□□□ -1.06
CPSF3-202ENST00000460593 SMIM9A6NGZ8 99 aa8.4□□□□□ -1.06
CPSF3-202ENST00000460593 J3KT08 172 aa8.4□□□□□ -1.06
CPSF3-202ENST00000460593 K7EMT4 169 aa8.4□□□□□ -1.06
CPSF3-202ENST00000460593 AVPP01185 164 aa8.4□□□□□ -1.06
CPSF3-202ENST00000460593 MALP21145 153 aa8.4□□□□□ -1.06
CPSF3-202ENST00000460593 ITPR1Q14643 2758 aa8.4□□□□□ -1.06
CPSF3-202ENST00000460593 UTP20O75691 2785 aaKnown RBP8.4□□□□□ -1.07
CPSF3-202ENST00000460593 CENPEQ02224 2701 aa8.4□□□□□ -1.07
CPSF3-202ENST00000460593 LINC00337Q8N6G1 96 aa8.39□□□□□ -1.07
CPSF3-202ENST00000460593 Q96MF0 132 aa8.39□□□□□ -1.07
CPSF3-202ENST00000460593 LINC00846Q9NV44 126 aa8.39□□□□□ -1.07
CPSF3-202ENST00000460593 TOMM7Q9P0U1 55 aa8.39□□□□□ -1.07
CPSF3-202ENST00000460593 USP9XQ93008 2570 aaPredicted RBP8.39□□□□□ -1.07
CPSF3-202ENST00000460593 K7ENP7 123 aa8.39□□□□□ -1.07
CPSF3-202ENST00000460593 NCR3O14931 201 aa8.39□□□□□ -1.07
CPSF3-202ENST00000460593 OXTP01178 125 aa8.39□□□□□ -1.07
CPSF3-202ENST00000460593 TRACP01848 142 aa8.39□□□□□ -1.07
CPSF3-202ENST00000460593 C18orf65Q6ZTR6 163 aa8.39□□□□□ -1.07
CPSF3-202ENST00000460593 WFDC9Q8NEX5 89 aa8.39□□□□□ -1.07
CPSF3-202ENST00000460593 IGLV5-39A0A0G2JS06 123 aa8.38□□□□□ -1.07
CPSF3-202ENST00000460593 C19orf84I3L1E1 186 aa8.38□□□□□ -1.07
CPSF3-202ENST00000460593 H3BUA1 57 aa8.38□□□□□ -1.07
CPSF3-202ENST00000460593 DNAL4O96015 105 aa8.38□□□□□ -1.07
CPSF3-202ENST00000460593 NIPBLQ6KC79 2804 aaeCLIP8.38□□□□□ -1.07
CPSF3-202ENST00000460593 IGHV4-59P01825 116 aa8.38□□□□□ -1.07
CPSF3-202ENST00000460593 FBN2P35556 2912 aa8.37□□□□□ -1.07
CPSF3-202ENST00000460593 IGLV5-45A0A087WSX0 123 aa8.37□□□□□ -1.07
CPSF3-202ENST00000460593 PSMB8P28062 276 aa8.37□□□□□ -1.07
CPSF3-202ENST00000460593 LY6DQ14210 128 aa8.37□□□□□ -1.07
CPSF3-202ENST00000460593 RNF152Q8N8N0 203 aa8.37□□□□□ -1.07
CPSF3-202ENST00000460593 MXRA5Q9NR99 2828 aa8.37□□□□□ -1.07
CPSF3-202ENST00000460593 MIR7-3HGQ8N6C7 128 aa8.37□□□□□ -1.07
CPSF3-202ENST00000460593 HILS1P60008 231 aa8.36□□□□□ -1.07
CPSF3-202ENST00000460593 SPTBN4Q9H254 2564 aa8.36□□□□□ -1.07
CPSF3-202ENST00000460593 IGKV2-28A0A075B6P5 120 aa8.36□□□□□ -1.07
CPSF3-202ENST00000460593 IGKV2D-28P01615 120 aa8.36□□□□□ -1.07
CPSF3-202ENST00000460593 CHD6Q8TD26 2715 aa8.36□□□□□ -1.07
CPSF3-202ENST00000460593 CRYGAP11844 174 aa8.36□□□□□ -1.07
CPSF3-202ENST00000460593 SLURP1P55000 103 aa8.36□□□□□ -1.07
CPSF3-202ENST00000460593 C5orf47Q569G3 176 aa8.36□□□□□ -1.07
CPSF3-202ENST00000460593 HIST2H2BCQ6DN03 193 aa8.36□□□□□ -1.07
CPSF3-202ENST00000460593 SMIM11BQ8TCY0 68 aa8.36□□□□□ -1.07
CPSF3-202ENST00000460593 TLN2Q9Y4G6 2542 aa8.35□□□□□ -1.07
CPSF3-202ENST00000460593 CRPP02741 224 aa8.35□□□□□ -1.07
CPSF3-202ENST00000460593 NTM-AS1Q6ZSK4 140 aa8.35□□□□□ -1.07
CPSF3-202ENST00000460593 LECT2O14960 151 aa8.35□□□□□ -1.07
CPSF3-202ENST00000460593 INAFM2P0DMQ5 153 aa8.35□□□□□ -1.07
CPSF3-202ENST00000460593 CXCL5P42830 114 aa8.35□□□□□ -1.07
CPSF3-202ENST00000460593 C4orf26Q17RF5 130 aa8.35□□□□□ -1.07
CPSF3-202ENST00000460593 LRRC75A-AS1Q8N1F1 130 aa8.35□□□□□ -1.07
CPSF3-202ENST00000460593 UBE2E2Q96LR5 201 aa8.35□□□□□ -1.07
CPSF3-202ENST00000460593 C11orf68Q9H3H3 251 aaKnown RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms