RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 APOC4P55056 127 aa4.67□□□□□ -1.66
VPS13D-202ENST00000460333 COX7B2Q8TF08 81 aa4.67□□□□□ -1.66
VPS13D-202ENST00000460333 VPS13AQ96RL7 3174 aa4.67□□□□□ -1.66
VPS13D-202ENST00000460333 USP17L23D6RBM5 183 aa4.67□□□□□ -1.66
VPS13D-202ENST00000460333 LECT2O14960 151 aa4.67□□□□□ -1.66
VPS13D-202ENST00000460333 ZNF22P17026 224 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-202ENST00000460333 MRGPRG-AS1Q2M3A8 158 aa4.67□□□□□ -1.66
VPS13D-202ENST00000460333 SDIM1Q6ZPB5 146 aa4.67□□□□□ -1.66
VPS13D-202ENST00000460333 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-202ENST00000460333 IGKV2-29A2NJV5 120 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-202ENST00000460333 FAM222AQ5U5X8 452 aa4.67□□□□□ -1.66
VPS13D-202ENST00000460333 FAM19A5Q7Z5A7 132 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-202ENST00000460333 IGHV4-4A0A075B6R2 117 aa4.66□□□□□ -1.66
VPS13D-202ENST00000460333 IGHV4-59P01825 116 aa4.66□□□□□ -1.66
VPS13D-202ENST00000460333 DEFB131AP59861 70 aa4.66□□□□□ -1.66
VPS13D-202ENST00000460333 RNASE13Q5GAN3 156 aaKnown RBP4.66□□□□□ -1.66
VPS13D-202ENST00000460333 C14orf132Q9NPU4 83 aa4.66□□□□□ -1.66
VPS13D-202ENST00000460333 TRBV7-7A0A0K0K1E9 115 aa4.66□□□□□ -1.66
VPS13D-202ENST00000460333 H7C423 109 aa4.66□□□□□ -1.66
VPS13D-202ENST00000460333 NRACQ8N912 160 aa4.66□□□□□ -1.66
VPS13D-202ENST00000460333 TLN2Q9Y4G6 2542 aa4.66□□□□□ -1.66
VPS13D-202ENST00000460333 IGHV3-38A0A0C4DH36 116 aa4.66□□□□□ -1.66
VPS13D-202ENST00000460333 RPS28P62857 69 aaKnown RBP4.66□□□□□ -1.66
VPS13D-202ENST00000460333 PKIGQ9Y2B9 76 aa4.66□□□□□ -1.66
VPS13D-202ENST00000460333 IGHV3-53P01767 116 aa4.65□□□□□ -1.66
VPS13D-202ENST00000460333 HOXD3P31249 432 aaPredicted RBP4.65□□□□□ -1.66
VPS13D-202ENST00000460333 TRAV23DV6A0A075B6W5 121 aa4.65□□□□□ -1.66
VPS13D-202ENST00000460333 NDUFA1O15239 70 aa4.65□□□□□ -1.66
VPS13D-202ENST00000460333 TET2Q6N021 2002 aaPredicted RBP4.65□□□□□ -1.66
VPS13D-202ENST00000460333 TRBV6-5A0A0K0K1A5 114 aa4.65□□□□□ -1.67
VPS13D-202ENST00000460333 ODF3Q96PU9 254 aa4.65□□□□□ -1.67
VPS13D-202ENST00000460333 AKAP13Q12802 2813 aa4.65□□□□□ -1.67
VPS13D-202ENST00000460333 TRAV12-2A0A075B6T6 113 aa4.65□□□□□ -1.67
VPS13D-202ENST00000460333 TRBV12-3P01733 135 aa4.65□□□□□ -1.67
VPS13D-202ENST00000460333 IGHV4-31P0DP07 118 aa4.65□□□□□ -1.67
VPS13D-202ENST00000460333 CRIP2P52943 208 aaPredicted RBP4.65□□□□□ -1.67
VPS13D-202ENST00000460333 PYGO1Q9Y3Y4 419 aa4.64□□□□□ -1.67
VPS13D-202ENST00000460333 USP9XQ93008 2570 aaPredicted RBP4.64□□□□□ -1.67
VPS13D-202ENST00000460333 RPL35AP18077 110 aaKnown RBP4.64□□□□□ -1.67
VPS13D-202ENST00000460333 BLCAPP62952 87 aa4.64□□□□□ -1.67
VPS13D-202ENST00000460333 ARHGAP32A7KAX9 2087 aa4.64□□□□□ -1.67
VPS13D-202ENST00000460333 IGHV3-16A0A0C4DH30 117 aa4.64□□□□□ -1.67
VPS13D-202ENST00000460333 BRI3O95415 125 aa4.64□□□□□ -1.67
VPS13D-202ENST00000460333 MP68P56378 58 aa4.64□□□□□ -1.67
VPS13D-202ENST00000460333 LINC00308Q8TCZ7 52 aa4.64□□□□□ -1.67
VPS13D-202ENST00000460333 CCL24O00175 119 aa4.64□□□□□ -1.67
VPS13D-202ENST00000460333 NXPH4O95158 308 aa4.64□□□□□ -1.67
VPS13D-202ENST00000460333 FUSP35637 526 aaKnown RBP eCLIP4.64□□□□□ -1.67
VPS13D-202ENST00000460333 TIRAPP58753 221 aa4.64□□□□□ -1.67
VPS13D-202ENST00000460333 DAD1P61803 113 aa4.64□□□□□ -1.67
VPS13D-202ENST00000460333 HRCT1Q6UXD1 115 aa4.64□□□□□ -1.67
VPS13D-202ENST00000460333 WNK1Q9H4A3 2382 aa4.64□□□□□ -1.67
VPS13D-202ENST00000460333 FRYLO94915 3013 aa4.63□□□□□ -1.67
VPS13D-202ENST00000460333 TRAV25A0A0B4J276 109 aa4.63□□□□□ -1.67
VPS13D-202ENST00000460333 K7EMT4 169 aa4.63□□□□□ -1.67
VPS13D-202ENST00000460333 ZNF580Q9UK33 172 aa4.63□□□□□ -1.67
VPS13D-202ENST00000460333 USP9YO00507 2555 aaPredicted RBP4.63□□□□□ -1.67
VPS13D-202ENST00000460333 NREPQ16612 68 aa4.63□□□□□ -1.67
VPS13D-202ENST00000460333 Q6YL49 198 aa4.63□□□□□ -1.67
VPS13D-202ENST00000460333 COX8CQ7Z4L0 72 aa4.63□□□□□ -1.67
VPS13D-202ENST00000460333 CCDC140Q96MF4 163 aa4.63□□□□□ -1.67
VPS13D-202ENST00000460333 Q9HAA7 133 aa4.63□□□□□ -1.67
VPS13D-202ENST00000460333 PLXNB1O43157 2135 aa4.63□□□□□ -1.67
VPS13D-202ENST00000460333 IGLV4-3A0A075B6K6 122 aa4.63□□□□□ -1.67
VPS13D-202ENST00000460333 A0A096LNJ9 63 aa4.63□□□□□ -1.67
VPS13D-202ENST00000460333 TRBV27A0A0K0K1C4 114 aa4.63□□□□□ -1.67
VPS13D-202ENST00000460333 IGHV4OR15-8A0A075B7B6 117 aa4.63□□□□□ -1.67
VPS13D-202ENST00000460333 A0A087WW49 117 aa4.63□□□□□ -1.67
VPS13D-202ENST00000460333 LYRM9A8MSI8 78 aa4.63□□□□□ -1.67
VPS13D-202ENST00000460333 LINC01546A6NGU7 62 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 K7EQD1 137 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 MIR7-3HGQ8N6C7 128 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 SMAD5-AS1Q9Y6J3 95 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 LINC01548A6NM66 108 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 GPHB5Q86YW7 130 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 PPDPFQ9H3Y8 114 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 PRO0461Q9UI25 63 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 PSCAO43653 123 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 CDK2AP2O75956 126 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 Q6ZQT7 251 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 WFDC9Q8NEX5 89 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 PRO0628Q9UI54 55 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 WDFY4Q6ZS81 3184 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 SPRY2O43597 315 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 UBE2E2Q96LR5 201 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 ZFAND3Q9H8U3 227 aa4.62□□□□□ -1.67
VPS13D-202ENST00000460333 DNAJC9-AS1A6NH13 148 aa4.61□□□□□ -1.67
VPS13D-202ENST00000460333 ENHOQ6UWT2 76 aa4.61□□□□□ -1.67
VPS13D-202ENST00000460333 PSMG3-AS1Q96PY0 264 aa4.61□□□□□ -1.67
VPS13D-202ENST00000460333 KLK5Q9Y337 293 aaPredicted RBP4.61□□□□□ -1.67
VPS13D-202ENST00000460333 TRAV7A0A075B6U4 112 aa4.61□□□□□ -1.67
VPS13D-202ENST00000460333 A0A0U1RQV1 116 aa4.61□□□□□ -1.67
VPS13D-202ENST00000460333 U3KQE9 123 aa4.61□□□□□ -1.67
VPS13D-202ENST00000460333 CRYGAP11844 174 aa4.61□□□□□ -1.67
VPS13D-202ENST00000460333 Q6ZS46 218 aa4.61□□□□□ -1.67
VPS13D-202ENST00000460333 MGAQ8IWI9 3026 aa4.61□□□□□ -1.67
VPS13D-202ENST00000460333 TRBV10-1A0A0K0K1A3 114 aa4.61□□□□□ -1.67
VPS13D-202ENST00000460333 KLK9Q2XQG4 91 aa4.61□□□□□ -1.67
VPS13D-202ENST00000460333 SBSPONQ8IVN8 264 aa4.61□□□□□ -1.67
VPS13D-202ENST00000460333 F8P00451 2351 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms