RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 NSD1Q96L73 2696 aaPredicted RBP-0.15□□□□□ -2.43
USP40-209ENST00000452724 SHANK2Q9UPX8 1470 aa-0.16□□□□□ -2.43
USP40-209ENST00000452724 C2CD3Q4AC94 2353 aa-0.16□□□□□ -2.43
USP40-209ENST00000452724 KTN1Q86UP2 1357 aaKnown RBP-0.16□□□□□ -2.43
USP40-209ENST00000452724 SPRR1AP35321 89 aa-0.16□□□□□ -2.44
USP40-209ENST00000452724 TSLPQ969D9 159 aa-0.16□□□□□ -2.44
USP40-209ENST00000452724 LRRC37A2A6NM11 1700 aa-0.16□□□□□ -2.44
USP40-209ENST00000452724 NWD2Q9ULI1 1742 aa-0.16□□□□□ -2.44
USP40-209ENST00000452724 PTPRQQ9UMZ3 2332 aa-0.16□□□□□ -2.44
USP40-209ENST00000452724 PTPN13Q12923 2485 aa-0.16□□□□□ -2.44
USP40-209ENST00000452724 ROCK2O75116 1388 aaKnown RBP-0.17□□□□□ -2.44
USP40-209ENST00000452724 TRBV6-1A0A0K0K1D8 114 aa-0.17□□□□□ -2.44
USP40-209ENST00000452724 PIGYQ3MUY2 71 aa-0.17□□□□□ -2.44
USP40-209ENST00000452724 ERCC6L2Q5T890 1561 aa-0.17□□□□□ -2.44
USP40-209ENST00000452724 MRPL54Q6P161 138 aaKnown RBP-0.17□□□□□ -2.44
USP40-209ENST00000452724 IER3IP1Q9Y5U9 82 aa-0.17□□□□□ -2.44
USP40-209ENST00000452724 LRP6O75581 1613 aa-0.17□□□□□ -2.44
USP40-209ENST00000452724 A2ML1A8K2U0 1454 aa-0.17□□□□□ -2.44
USP40-209ENST00000452724 PI4KAP42356 2102 aa-0.17□□□□□ -2.44
USP40-209ENST00000452724 CSMD3Q7Z407 3707 aa-0.18□□□□□ -2.44
USP40-209ENST00000452724 C10orf71Q711Q0 1435 aa-0.18□□□□□ -2.44
USP40-209ENST00000452724 UBE2L5PA0A1B0GUS4 154 aa-0.18□□□□□ -2.44
USP40-209ENST00000452724 OOSP1A8MZH6 123 aa-0.18□□□□□ -2.44
USP40-209ENST00000452724 SFT2D2O95562 160 aa-0.18□□□□□ -2.44
USP40-209ENST00000452724 UBE2L3P68036 154 aaKnown RBP-0.18□□□□□ -2.44
USP40-209ENST00000452724 DPH3P1Q9H4G8 78 aa-0.18□□□□□ -2.44
USP40-209ENST00000452724 LINC00474Q9P2X8 69 aa-0.18□□□□□ -2.44
USP40-209ENST00000452724 ARAP2Q8WZ64 1704 aa-0.18□□□□□ -2.44
USP40-209ENST00000452724 PKDREJQ9NTG1 2253 aa-0.18□□□□□ -2.44
USP40-209ENST00000452724 FAM24AA6NFZ4 105 aa-0.19□□□□□ -2.44
USP40-209ENST00000452724 DLEU1O43261 78 aa-0.19□□□□□ -2.44
USP40-209ENST00000452724 MGPP08493 103 aa-0.19□□□□□ -2.44
USP40-209ENST00000452724 ATP5EP56381 51 aaPredicted RBP-0.19□□□□□ -2.44
USP40-209ENST00000452724 WHAMMP3Q1A5X7 153 aa-0.19□□□□□ -2.44
USP40-209ENST00000452724 C9orf153Q5TBE3 101 aa-0.19□□□□□ -2.44
USP40-209ENST00000452724 TMEM263Q8WUH6 116 aaKnown RBP-0.19□□□□□ -2.44
USP40-209ENST00000452724 NXT2Q9NPJ8 142 aaKnown RBP-0.19□□□□□ -2.44
USP40-209ENST00000452724 CDC42SE2Q9NRR3 84 aa-0.19□□□□□ -2.44
USP40-209ENST00000452724 UQCR10Q9UDW1 63 aa-0.19□□□□□ -2.44
USP40-209ENST00000452724 PRDM2Q13029 1718 aa-0.19□□□□□ -2.44
USP40-209ENST00000452724 LAMC1P11047 1609 aa-0.2□□□□□ -2.44
USP40-209ENST00000452724 FLNCQ14315 2725 aa-0.2□□□□□ -2.44
USP40-209ENST00000452724 CHKB-CPT1BH3BT56 60 aa-0.2□□□□□ -2.44
USP40-209ENST00000452724 FAM167A-AS1Q96KT0 104 aa-0.2□□□□□ -2.44
USP40-209ENST00000452724 SPRR4Q96PI1 79 aa-0.2□□□□□ -2.44
USP40-209ENST00000452724 KDM3BQ7LBC6 1761 aa-0.2□□□□□ -2.44
USP40-209ENST00000452724 ZNF292O60281 2723 aa-0.2□□□□□ -2.44
USP40-209ENST00000452724 SPEF2Q9C093 1822 aa-0.21□□□□□ -2.44
USP40-209ENST00000452724 SPRR2DP22532 72 aa-0.21□□□□□ -2.44
USP40-209ENST00000452724 SARNPP82979 210 aaKnown RBP-0.21□□□□□ -2.44
USP40-209ENST00000452724 DEFB123Q8N688 67 aa-0.21□□□□□ -2.44
USP40-209ENST00000452724 FAIMQ9NVQ4 179 aa-0.21□□□□□ -2.44
USP40-209ENST00000452724 NCOR1O75376 2440 aa-0.21□□□□□ -2.44
USP40-209ENST00000452724 RIMS1Q86UR5 1692 aaKnown RBP-0.21□□□□□ -2.44
USP40-209ENST00000452724 SMG6Q86US8 1419 aaKnown RBP-0.21□□□□□ -2.44
USP40-209ENST00000452724 HMCN2Q8NDA2 5059 aa-0.22□□□□□ -2.44
USP40-209ENST00000452724 F6UZH7 168 aa-0.22□□□□□ -2.44
USP40-209ENST00000452724 CORTO00230 105 aa-0.22□□□□□ -2.44
USP40-209ENST00000452724 SNAPC5O75971 98 aa-0.22□□□□□ -2.44
USP40-209ENST00000452724 COX6B1P14854 86 aa-0.22□□□□□ -2.44
USP40-209ENST00000452724 GNG4P50150 75 aa-0.22□□□□□ -2.44
USP40-209ENST00000452724 WNK3Q9BYP7 1800 aa-0.22□□□□□ -2.45
USP40-209ENST00000452724 TENM4Q6N022 2769 aa-0.23□□□□□ -2.45
USP40-209ENST00000452724 DOPEY2Q9Y3R5 2298 aa-0.23□□□□□ -2.45
USP40-209ENST00000452724 A0A1B0GV90 55 aa-0.23□□□□□ -2.45
USP40-209ENST00000452724 H3BQ15 152 aa-0.23□□□□□ -2.45
USP40-209ENST00000452724 IGLC1P0CG04 106 aa-0.23□□□□□ -2.45
USP40-209ENST00000452724 PATJQ8NI35 1801 aa-0.23□□□□□ -2.45
USP40-209ENST00000452724 PPRC1Q5VV67 1664 aaKnown RBP-0.24□□□□□ -2.45
USP40-209ENST00000452724 PLXNB2O15031 1838 aa-0.24□□□□□ -2.45
USP40-209ENST00000452724 FXYD6-FXYD2A0A087WZ82 144 aa-0.24□□□□□ -2.45
USP40-209ENST00000452724 GNG11P61952 73 aa-0.24□□□□□ -2.45
USP40-209ENST00000452724 PPP3R1P63098 170 aa-0.24□□□□□ -2.45
USP40-209ENST00000452724 SVBPQ8N300 66 aa-0.24□□□□□ -2.45
USP40-209ENST00000452724 TMEM203Q969S6 136 aa-0.24□□□□□ -2.45
USP40-209ENST00000452724 C2orf88Q9BSF0 95 aa-0.24□□□□□ -2.45
USP40-209ENST00000452724 RAPGEF6Q8TEU7 1601 aa-0.24□□□□□ -2.45
USP40-209ENST00000452724 PHLPP1O60346 1717 aa-0.24□□□□□ -2.45
USP40-209ENST00000452724 DOCK1Q14185 1865 aa-0.24□□□□□ -2.45
USP40-209ENST00000452724 GOLGA4Q13439 2230 aaKnown RBP-0.25□□□□□ -2.45
USP40-209ENST00000452724 LPAP08519 4548 aa-0.25□□□□□ -2.45
USP40-209ENST00000452724 PRM1P04553 51 aa-0.25□□□□□ -2.45
USP40-209ENST00000452724 COX6CP09669 75 aa-0.25□□□□□ -2.45
USP40-209ENST00000452724 SPRR1BP22528 89 aa-0.25□□□□□ -2.45
USP40-209ENST00000452724 C10orf113Q5VZT2 155 aa-0.25□□□□□ -2.45
USP40-209ENST00000452724 ARL2-SNX15V9GYD0 113 aa-0.25□□□□□ -2.45
USP40-209ENST00000452724 NSD3Q9BZ95 1437 aa-0.25□□□□□ -2.45
USP40-209ENST00000452724 POLA1P09884 1462 aaPredicted RBP-0.25□□□□□ -2.45
USP40-209ENST00000452724 MYOM2P54296 1465 aa-0.25□□□□□ -2.45
USP40-209ENST00000452724 KIF21AQ7Z4S6 1674 aa-0.25□□□□□ -2.45
USP40-209ENST00000452724 PLCE1Q9P212 2302 aa-0.25□□□□□ -2.45
USP40-209ENST00000452724 FOCADQ5VW36 1801 aa-0.26□□□□□ -2.45
USP40-209ENST00000452724 QRICH2Q9H0J4 1663 aa-0.26□□□□□ -2.45
USP40-209ENST00000452724 WDR7Q9Y4E6 1490 aa-0.26□□□□□ -2.45
USP40-209ENST00000452724 TRBV7-4A0A0J9YYF1 115 aa-0.26□□□□□ -2.45
USP40-209ENST00000452724 NAP1L6A6NFF2 107 aa-0.26□□□□□ -2.45
USP40-209ENST00000452724 UBE2D3P61077 147 aa-0.26□□□□□ -2.45
USP40-209ENST00000452724 UBE2D2P62837 147 aa-0.26□□□□□ -2.45
USP40-209ENST00000452724 UBA52P62987 128 aaKnown RBP-0.26□□□□□ -2.45
USP40-209ENST00000452724 MRPS10P82664 201 aaKnown RBP-0.26□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms