RNA–Protein interactions for RNA: ENST00000445593.6

LAPTM4B-201, Transcript of lysosomal protein transmembrane 4 beta, humanhuman

TSL 1 (best) BASIC

Gene LAPTM4B, Length 3,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAPTM4B-201ENST00000445593 GAGE12FP0CL80 117 aa12.12□□□□□ -0.47
LAPTM4B-201ENST00000445593 GAGE12GP0CL81 117 aa12.12□□□□□ -0.47
LAPTM4B-201ENST00000445593 GAGE12IP0CL82 117 aa12.12□□□□□ -0.47
LAPTM4B-201ENST00000445593 TSPEAR-AS2P59090 65 aa12.12□□□□□ -0.47
LAPTM4B-201ENST00000445593 TMEM141Q96I45 108 aa12.12□□□□□ -0.47
LAPTM4B-201ENST00000445593 CDIP1Q9H305 208 aa12.12□□□□□ -0.47
LAPTM4B-201ENST00000445593 ZFAND6Q6FIF0 208 aa12.12□□□□□ -0.47
LAPTM4B-201ENST00000445593 IGLV4-3A0A075B6K6 122 aa12.12□□□□□ -0.47
LAPTM4B-201ENST00000445593 GIG44P09565 113 aaPredicted RBP12.11□□□□□ -0.47
LAPTM4B-201ENST00000445593 RHOHQ15669 191 aa12.11□□□□□ -0.47
LAPTM4B-201ENST00000445593 E9PLD3 99 aa12.11□□□□□ -0.47
LAPTM4B-201ENST00000445593 CEND1Q8N111 149 aa12.11□□□□□ -0.47
LAPTM4B-201ENST00000445593 GAGE12JA6NER3 117 aa12.1□□□□□ -0.47
LAPTM4B-201ENST00000445593 GAGE4Q13068 117 aa12.1□□□□□ -0.47
LAPTM4B-201ENST00000445593 LINC00467Q9BRT7 94 aa12.1□□□□□ -0.47
LAPTM4B-201ENST00000445593 TRGV2A0A075B6R0 118 aa12.1□□□□□ -0.47
LAPTM4B-201ENST00000445593 LOC107984640A0A0U1RRK4 108 aa12.1□□□□□ -0.47
LAPTM4B-201ENST00000445593 SPXQ9BT56 116 aa12.1□□□□□ -0.47
LAPTM4B-201ENST00000445593 HERVK_113P61574 105 aa12.09□□□□□ -0.47
LAPTM4B-201ENST00000445593 HIGD1BQ9P298 99 aa12.08□□□□□ -0.48
LAPTM4B-201ENST00000445593 LOC107984156A0A0G2JMH3 177 aa12.08□□□□□ -0.48
LAPTM4B-201ENST00000445593 TTC32Q5I0X7 151 aa12.08□□□□□ -0.48
LAPTM4B-201ENST00000445593 ARL17AQ8IVW1 177 aa12.08□□□□□ -0.48
LAPTM4B-201ENST00000445593 LINC00482Q8N8I6 264 aa12.08□□□□□ -0.48
LAPTM4B-201ENST00000445593 LOC100131303A0A0U1RQF7 123 aa12.07□□□□□ -0.48
LAPTM4B-201ENST00000445593 C19orf73Q9NVV2 129 aa12.07□□□□□ -0.48
LAPTM4B-201ENST00000445593 A8MZ25 164 aa12.07□□□□□ -0.48
LAPTM4B-201ENST00000445593 RHODO00212 210 aa12.07□□□□□ -0.48
LAPTM4B-201ENST00000445593 RS1O15537 224 aa12.07□□□□□ -0.48
LAPTM4B-201ENST00000445593 MEIG1Q5JSS6 88 aa12.07□□□□□ -0.48
LAPTM4B-201ENST00000445593 NFE4Q86UQ8 179 aa12.07□□□□□ -0.48
LAPTM4B-201ENST00000445593 TRAV8-3A0A0A6YYJ7 113 aa12.06□□□□□ -0.48
LAPTM4B-201ENST00000445593 NHLRC4P0CG21 123 aaPredicted RBP12.06□□□□□ -0.48
LAPTM4B-201ENST00000445593 FOXI1Q12951 378 aa12.06□□□□□ -0.48
LAPTM4B-201ENST00000445593 TMEM263Q8WUH6 116 aaKnown RBP12.06□□□□□ -0.48
LAPTM4B-201ENST00000445593 CHCHD7Q9BUK0 85 aa12.06□□□□□ -0.48
LAPTM4B-201ENST00000445593 STAB1Q9NY15 2570 aa12.06□□□□□ -0.48
LAPTM4B-201ENST00000445593 F8W1H4 67 aa12.06□□□□□ -0.48
LAPTM4B-201ENST00000445593 NDUFA7O95182 113 aa12.05□□□□□ -0.48
LAPTM4B-201ENST00000445593 DEFB130BP0DP73 79 aa12.05□□□□□ -0.48
LAPTM4B-201ENST00000445593 DEFB130AP0DP74 79 aa12.05□□□□□ -0.48
LAPTM4B-201ENST00000445593 LGALS3P17931 250 aaKnown RBP12.05□□□□□ -0.48
LAPTM4B-201ENST00000445593 RRN3P1Q2M238 152 aa12.05□□□□□ -0.48
LAPTM4B-201ENST00000445593 BEAN1Q3B7T3 259 aa12.05□□□□□ -0.48
LAPTM4B-201ENST00000445593 DGAT2L7PQ6IED9 249 aa12.05□□□□□ -0.48
LAPTM4B-201ENST00000445593 SLC25A29Q8N8R3 303 aa12.05□□□□□ -0.48
LAPTM4B-201ENST00000445593 ZNF22P17026 224 aaPredicted RBP12.04□□□□□ -0.48
LAPTM4B-201ENST00000445593 MAST4O15021 2626 aa12.04□□□□□ -0.48
LAPTM4B-201ENST00000445593 J3QQQ9 107 aa12.04□□□□□ -0.48
LAPTM4B-201ENST00000445593 FAM104AQ969W3 186 aa12.04□□□□□ -0.48
LAPTM4B-201ENST00000445593 DEFB4AO15263 64 aa12.03□□□□□ -0.48
LAPTM4B-201ENST00000445593 LINC00694P0DN24 101 aa12.03□□□□□ -0.48
LAPTM4B-201ENST00000445593 PSMB2P49721 201 aa12.03□□□□□ -0.48
LAPTM4B-201ENST00000445593 PAPPA-AS1Q5QFB9 102 aa12.03□□□□□ -0.48
LAPTM4B-201ENST00000445593 TRBV7-3A0A075B6L6 115 aa12.03□□□□□ -0.48
LAPTM4B-201ENST00000445593 NDUFA11Q86Y39 141 aa12.02□□□□□ -0.48
LAPTM4B-201ENST00000445593 IGKV3OR2-268A0A0C4DH90 116 aa12.02□□□□□ -0.49
LAPTM4B-201ENST00000445593 C12orf74Q32Q52 190 aa12.02□□□□□ -0.49
LAPTM4B-201ENST00000445593 UBE2D4Q9Y2X8 147 aa12.02□□□□□ -0.49
LAPTM4B-201ENST00000445593 CRLF1O75462 422 aa12.02□□□□□ -0.49
LAPTM4B-201ENST00000445593 GAGE2BQ13066 116 aa12.02□□□□□ -0.49
LAPTM4B-201ENST00000445593 GAGE2EQ4V326 116 aa12.02□□□□□ -0.49
LAPTM4B-201ENST00000445593 GAGE2DQ9UEU5 116 aa12.02□□□□□ -0.49
LAPTM4B-201ENST00000445593 LINC01549A6NIU2 74 aa12.01□□□□□ -0.49
LAPTM4B-201ENST00000445593 IGLL5B9A064 214 aa12.01□□□□□ -0.49
LAPTM4B-201ENST00000445593 K7EQD1 137 aa12.01□□□□□ -0.49
LAPTM4B-201ENST00000445593 TRGV4A0A0C4DH28 118 aa12□□□□□ -0.49
LAPTM4B-201ENST00000445593 RPL36AP83881 106 aaKnown RBP12□□□□□ -0.49
LAPTM4B-201ENST00000445593 RPL36ALQ969Q0 106 aaKnown RBP12□□□□□ -0.49
LAPTM4B-201ENST00000445593 TRAV4A0A0B4J268 109 aa12□□□□□ -0.49
LAPTM4B-201ENST00000445593 PLAC8L1A1L4L8 177 aa12□□□□□ -0.49
LAPTM4B-201ENST00000445593 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12□□□□□ -0.49
LAPTM4B-201ENST00000445593 CSDC2Q9Y534 153 aaKnown RBP12□□□□□ -0.49
LAPTM4B-201ENST00000445593 TRAV13-1A0A0B4J241 112 aa12□□□□□ -0.49
LAPTM4B-201ENST00000445593 TMEM223A0PJW6 202 aa12□□□□□ -0.49
LAPTM4B-201ENST00000445593 NDUFV3P56181 108 aaKnown RBP12□□□□□ -0.49
LAPTM4B-201ENST00000445593 NPC2P61916 151 aa12□□□□□ -0.49
LAPTM4B-201ENST00000445593 A0A0J9YY99 117 aa11.99□□□□□ -0.49
LAPTM4B-201ENST00000445593 IL17DQ8TAD2 202 aa11.99□□□□□ -0.49
LAPTM4B-201ENST00000445593 NTM-AS1Q6ZSK4 140 aa11.98□□□□□ -0.49
LAPTM4B-201ENST00000445593 CSNK1G2-AS1Q8NCQ2 148 aa11.98□□□□□ -0.49
LAPTM4B-201ENST00000445593 C16orf74Q96GX8 76 aa11.98□□□□□ -0.49
LAPTM4B-201ENST00000445593 TIMM21Q9BVV7 248 aa11.98□□□□□ -0.49
LAPTM4B-201ENST00000445593 A0A096LPF7 62 aa11.97□□□□□ -0.49
LAPTM4B-201ENST00000445593 PIK3CD-AS1Q5SR53 167 aa11.97□□□□□ -0.49
LAPTM4B-201ENST00000445593 SNCGO76070 127 aa11.97□□□□□ -0.49
LAPTM4B-201ENST00000445593 EDA2RQ9HAV5 297 aa11.97□□□□□ -0.49
LAPTM4B-201ENST00000445593 H7C2G1 150 aa11.96□□□□□ -0.49
LAPTM4B-201ENST00000445593 IGHV3-30-3P0DP02 117 aa11.96□□□□□ -0.49
LAPTM4B-201ENST00000445593 AMELXQ99217 191 aa11.96□□□□□ -0.49
LAPTM4B-201ENST00000445593 A0A0U1RRA0 63 aa11.96□□□□□ -0.5
LAPTM4B-201ENST00000445593 CMC4P56277 68 aaPredicted RBP11.96□□□□□ -0.5
LAPTM4B-201ENST00000445593 DEFB135Q30KP9 77 aa11.95□□□□□ -0.5
LAPTM4B-201ENST00000445593 DNAJC30Q96LL9 226 aa11.95□□□□□ -0.5
LAPTM4B-201ENST00000445593 CDKN2A-AS1Q9UH64 79 aa11.95□□□□□ -0.5
LAPTM4B-201ENST00000445593 KLK5Q9Y337 293 aaPredicted RBP11.95□□□□□ -0.5
LAPTM4B-201ENST00000445593 PYGO1Q9Y3Y4 419 aa11.95□□□□□ -0.5
LAPTM4B-201ENST00000445593 ZNF625Q96I27 306 aaPredicted RBP11.95□□□□□ -0.5
LAPTM4B-201ENST00000445593 NOTCH1P46531 2555 aa11.95□□□□□ -0.5
LAPTM4B-201ENST00000445593 LEPROTO15243 131 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms