RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 MAP6D1Q9H9H5 199 aa11.88□□□□□ -0.51
CLCNKA-203ENST00000439316 SPANXCQ9NY87 97 aa11.88□□□□□ -0.51
CLCNKA-203ENST00000439316 H7C2G1 150 aa11.88□□□□□ -0.51
CLCNKA-203ENST00000439316 VSIG2Q96IQ7 327 aa11.88□□□□□ -0.51
CLCNKA-203ENST00000439316 PEMTQ9UBM1 199 aa11.88□□□□□ -0.51
CLCNKA-203ENST00000439316 A0A1B0GV72 72 aa11.87□□□□□ -0.51
CLCNKA-203ENST00000439316 C9JAW5 83 aa11.87□□□□□ -0.51
CLCNKA-203ENST00000439316 CIDEAO60543 219 aa11.87□□□□□ -0.51
CLCNKA-203ENST00000439316 IGHV3-53P01767 116 aa11.87□□□□□ -0.51
CLCNKA-203ENST00000439316 Q6ZUT4 128 aa11.87□□□□□ -0.51
CLCNKA-203ENST00000439316 DNAJC30Q96LL9 226 aa11.87□□□□□ -0.51
CLCNKA-203ENST00000439316 NDUFA12Q9UI09 145 aa11.87□□□□□ -0.51
CLCNKA-203ENST00000439316 FN1P02751 2386 aaKnown RBP11.87□□□□□ -0.51
CLCNKA-203ENST00000439316 BEAN1Q3B7T3 259 aa11.87□□□□□ -0.51
CLCNKA-203ENST00000439316 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.86□□□□□ -0.51
CLCNKA-203ENST00000439316 TRBV30A0A0K0K1B3 111 aa11.86□□□□□ -0.51
CLCNKA-203ENST00000439316 IGKV2-29A2NJV5 120 aaPredicted RBP11.86□□□□□ -0.51
CLCNKA-203ENST00000439316 XGP55808 180 aa11.86□□□□□ -0.51
CLCNKA-203ENST00000439316 Q1RN00 199 aa11.86□□□□□ -0.51
CLCNKA-203ENST00000439316 ADAMTSL4-AS1Q5T5F5 129 aa11.86□□□□□ -0.51
CLCNKA-203ENST00000439316 C4orf3Q8WVX3 66 aa11.86□□□□□ -0.51
CLCNKA-203ENST00000439316 LINC01600Q96MT4 127 aa11.86□□□□□ -0.51
CLCNKA-203ENST00000439316 F8P00451 2351 aa11.85□□□□□ -0.51
CLCNKA-203ENST00000439316 MT-ATP8P03928 68 aa11.85□□□□□ -0.51
CLCNKA-203ENST00000439316 RNASE1P07998 156 aaKnown RBP11.85□□□□□ -0.51
CLCNKA-203ENST00000439316 ATXN8Q156A1 80 aa11.85□□□□□ -0.51
CLCNKA-203ENST00000439316 RS1O15537 224 aa11.85□□□□□ -0.51
CLCNKA-203ENST00000439316 SPINK8P0C7L1 97 aa11.85□□□□□ -0.51
CLCNKA-203ENST00000439316 MIAQ16674 131 aa11.85□□□□□ -0.51
CLCNKA-203ENST00000439316 LINC01587Q99440 93 aa11.85□□□□□ -0.51
CLCNKA-203ENST00000439316 INAFM1C9JVW0 142 aa11.84□□□□□ -0.51
CLCNKA-203ENST00000439316 TRIAP1O43715 76 aa11.84□□□□□ -0.51
CLCNKA-203ENST00000439316 INSP01308 110 aa11.84□□□□□ -0.51
CLCNKA-203ENST00000439316 HILS1P60008 231 aa11.84□□□□□ -0.51
CLCNKA-203ENST00000439316 LINC01620Q4KN68 170 aa11.84□□□□□ -0.51
CLCNKA-203ENST00000439316 ZFAND6Q6FIF0 208 aa11.84□□□□□ -0.51
CLCNKA-203ENST00000439316 DYNLRB2Q8TF09 96 aa11.83□□□□□ -0.52
CLCNKA-203ENST00000439316 A8MZ25 164 aa11.83□□□□□ -0.52
CLCNKA-203ENST00000439316 IGLV5-45A0A087WSX0 123 aa11.82□□□□□ -0.52
CLCNKA-203ENST00000439316 IGHV3-38A0A0C4DH36 116 aa11.82□□□□□ -0.52
CLCNKA-203ENST00000439316 TIMM17BO60830 172 aa11.82□□□□□ -0.52
CLCNKA-203ENST00000439316 PRSS2P07478 247 aa11.82□□□□□ -0.52
CLCNKA-203ENST00000439316 DEFB114Q30KQ6 69 aa11.82□□□□□ -0.52
CLCNKA-203ENST00000439316 RNF183Q96D59 192 aa11.82□□□□□ -0.52
CLCNKA-203ENST00000439316 NIPBLQ6KC79 2804 aaeCLIP11.81□□□□□ -0.52
CLCNKA-203ENST00000439316 TMEM262E9PQX1 116 aa11.81□□□□□ -0.52
CLCNKA-203ENST00000439316 CKS1BP61024 79 aa11.81□□□□□ -0.52
CLCNKA-203ENST00000439316 GEMIN7Q9H840 131 aaKnown RBP11.81□□□□□ -0.52
CLCNKA-203ENST00000439316 TIRAPP58753 221 aa11.81□□□□□ -0.52
CLCNKA-203ENST00000439316 HIST2H2BDQ6DRA6 164 aa11.81□□□□□ -0.52
CLCNKA-203ENST00000439316 CLUHP3Q96NS8 147 aa11.81□□□□□ -0.52
CLCNKA-203ENST00000439316 ICOSQ9Y6W8 199 aa11.81□□□□□ -0.52
CLCNKA-203ENST00000439316 C2CD3Q4AC94 2353 aa11.8□□□□□ -0.52
CLCNKA-203ENST00000439316 WNK1Q9H4A3 2382 aa11.8□□□□□ -0.52
CLCNKA-203ENST00000439316 TRBV10-2A0A0K0K1G8 114 aa11.79□□□□□ -0.52
CLCNKA-203ENST00000439316 KHDC1LQ5JSQ8 128 aa11.79□□□□□ -0.52
CLCNKA-203ENST00000439316 CDKN2A-AS1Q9UH64 79 aa11.79□□□□□ -0.52
CLCNKA-203ENST00000439316 NDUFA1O15239 70 aa11.79□□□□□ -0.52
CLCNKA-203ENST00000439316 LINC01006Q8NI28 216 aa11.79□□□□□ -0.52
CLCNKA-203ENST00000439316 IL17DQ8TAD2 202 aa11.79□□□□□ -0.52
CLCNKA-203ENST00000439316 IFITM1P13164 125 aa11.78□□□□□ -0.52
CLCNKA-203ENST00000439316 RPL13AP40429 203 aaKnown RBP11.78□□□□□ -0.52
CLCNKA-203ENST00000439316 NTN5Q8WTR8 489 aaPredicted RBP11.78□□□□□ -0.52
CLCNKA-203ENST00000439316 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.78□□□□□ -0.52
CLCNKA-203ENST00000439316 C11orf44Q8N8P7 122 aa11.78□□□□□ -0.52
CLCNKA-203ENST00000439316 C16orf95Q9H693 158 aa11.78□□□□□ -0.52
CLCNKA-203ENST00000439316 JMJD1CQ15652 2540 aa11.77□□□□□ -0.52
CLCNKA-203ENST00000439316 ODF3L2Q3SX64 289 aa11.77□□□□□ -0.53
CLCNKA-203ENST00000439316 TMEM101Q96IK0 257 aa11.77□□□□□ -0.53
CLCNKA-203ENST00000439316 IGHV3OR16-12A0A075B7B8 117 aa11.76□□□□□ -0.53
CLCNKA-203ENST00000439316 NPC2P61916 151 aa11.76□□□□□ -0.53
CLCNKA-203ENST00000439316 IGLV5-39A0A0G2JS06 123 aa11.76□□□□□ -0.53
CLCNKA-203ENST00000439316 XCL2Q9UBD3 114 aa11.76□□□□□ -0.53
CLCNKA-203ENST00000439316 DGAT2L7PQ6IED9 249 aa11.75□□□□□ -0.53
CLCNKA-203ENST00000439316 FAM19A3Q7Z5A8 133 aa11.75□□□□□ -0.53
CLCNKA-203ENST00000439316 C1orf158Q8N1D5 194 aa11.75□□□□□ -0.53
CLCNKA-203ENST00000439316 TRAV25A0A0B4J276 109 aa11.74□□□□□ -0.53
CLCNKA-203ENST00000439316 COX6CP09669 75 aa11.74□□□□□ -0.53
CLCNKA-203ENST00000439316 HERVK_113P63121 156 aa11.74□□□□□ -0.53
CLCNKA-203ENST00000439316 COX6A2Q02221 97 aa11.74□□□□□ -0.53
CLCNKA-203ENST00000439316 TEP1Q99973 2627 aaKnown RBP11.74□□□□□ -0.53
CLCNKA-203ENST00000439316 LINC00242Q5T6M2 205 aa11.74□□□□□ -0.53
CLCNKA-203ENST00000439316 H3BT86 120 aa11.73□□□□□ -0.53
CLCNKA-203ENST00000439316 H7C423 109 aa11.73□□□□□ -0.53
CLCNKA-203ENST00000439316 CITED1Q99966 193 aa11.73□□□□□ -0.53
CLCNKA-203ENST00000439316 TRGV1A0A0A0MS02 117 aa11.72□□□□□ -0.53
CLCNKA-203ENST00000439316 LST1O00453 97 aa11.72□□□□□ -0.53
CLCNKA-203ENST00000439316 NDUFA7O95182 113 aa11.72□□□□□ -0.53
CLCNKA-203ENST00000439316 STHQ8IWL8 128 aa11.72□□□□□ -0.53
CLCNKA-203ENST00000439316 UBE2WQ96B02 151 aa11.72□□□□□ -0.53
CLCNKA-203ENST00000439316 TRBV10-1A0A0K0K1A3 114 aa11.72□□□□□ -0.53
CLCNKA-203ENST00000439316 TEX49A0A1B0GTD5 131 aa11.72□□□□□ -0.53
CLCNKA-203ENST00000439316 A0A1W2PRX2 142 aa11.72□□□□□ -0.53
CLCNKA-203ENST00000439316 CRLF1O75462 422 aa11.72□□□□□ -0.53
CLCNKA-203ENST00000439316 LINC00694P0DN24 101 aa11.72□□□□□ -0.53
CLCNKA-203ENST00000439316 C2orf82Q6UX34 121 aa11.72□□□□□ -0.53
CLCNKA-203ENST00000439316 DAND5Q8N907 189 aa11.72□□□□□ -0.53
CLCNKA-203ENST00000439316 CSDC2Q9Y534 153 aaKnown RBP11.72□□□□□ -0.53
CLCNKA-203ENST00000439316 K7EQD1 137 aa11.71□□□□□ -0.53
CLCNKA-203ENST00000439316 CIRBPQ14011 172 aaKnown RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms