RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 IGKV2-29A2NJV5 120 aaPredicted RBP6.88□□□□□ -1.31
CUX1-206ENST00000437600 FHL3Q13643 280 aa6.88□□□□□ -1.31
CUX1-206ENST00000437600 POM121L12Q8N7R1 296 aa6.88□□□□□ -1.31
CUX1-206ENST00000437600 NBEAL1Q6ZS30 2694 aa6.88□□□□□ -1.31
CUX1-206ENST00000437600 CCDC179H3BU77 68 aa6.87□□□□□ -1.31
CUX1-206ENST00000437600 PPP1R17O96001 155 aa6.87□□□□□ -1.31
CUX1-206ENST00000437600 NFE4Q86UQ8 179 aa6.87□□□□□ -1.31
CUX1-206ENST00000437600 ODF3L2Q3SX64 289 aa6.87□□□□□ -1.31
CUX1-206ENST00000437600 Q6ZUT4 128 aa6.87□□□□□ -1.31
CUX1-206ENST00000437600 TRAV8-3A0A0A6YYJ7 113 aa6.87□□□□□ -1.31
CUX1-206ENST00000437600 NHLRC4P0CG21 123 aaPredicted RBP6.87□□□□□ -1.31
CUX1-206ENST00000437600 TRPT1Q86TN4 253 aaKnown RBP6.87□□□□□ -1.31
CUX1-206ENST00000437600 TRBV7-3A0A075B6L6 115 aa6.86□□□□□ -1.31
CUX1-206ENST00000437600 F5H768 121 aa6.86□□□□□ -1.31
CUX1-206ENST00000437600 I3L3M4 83 aa6.86□□□□□ -1.31
CUX1-206ENST00000437600 SMCPP49901 116 aaPredicted RBP6.86□□□□□ -1.31
CUX1-206ENST00000437600 PRIMA1Q86XR5 153 aa6.86□□□□□ -1.31
CUX1-206ENST00000437600 C20orf203Q8NBC4 194 aa6.86□□□□□ -1.31
CUX1-206ENST00000437600 SPATA3Q8NHX4 192 aa6.86□□□□□ -1.31
CUX1-206ENST00000437600 CMYA5Q8N3K9 4069 aa6.86□□□□□ -1.31
CUX1-206ENST00000437600 LOC107984156A0A0G2JMH3 177 aa6.86□□□□□ -1.31
CUX1-206ENST00000437600 PSMB2P49721 201 aa6.86□□□□□ -1.31
CUX1-206ENST00000437600 ARL17AQ8IVW1 177 aa6.86□□□□□ -1.31
CUX1-206ENST00000437600 TRGV11A0A075B6L2 103 aa6.85□□□□□ -1.31
CUX1-206ENST00000437600 LINC01549A6NIU2 74 aa6.85□□□□□ -1.31
CUX1-206ENST00000437600 H7C2G1 150 aa6.85□□□□□ -1.31
CUX1-206ENST00000437600 NDUFA7O95182 113 aa6.85□□□□□ -1.31
CUX1-206ENST00000437600 RPL35AP18077 110 aaKnown RBP6.85□□□□□ -1.31
CUX1-206ENST00000437600 NPC2P61916 151 aa6.85□□□□□ -1.31
CUX1-206ENST00000437600 TAL2Q16559 108 aa6.85□□□□□ -1.31
CUX1-206ENST00000437600 CFAP126Q5VTH2 177 aa6.85□□□□□ -1.31
CUX1-206ENST00000437600 TRGV1A0A0A0MS02 117 aa6.84□□□□□ -1.31
CUX1-206ENST00000437600 STHQ8IWL8 128 aa6.84□□□□□ -1.31
CUX1-206ENST00000437600 ODF3Q96PU9 254 aa6.84□□□□□ -1.31
CUX1-206ENST00000437600 IGLV4-3A0A075B6K6 122 aa6.84□□□□□ -1.31
CUX1-206ENST00000437600 FAM104AQ969W3 186 aa6.84□□□□□ -1.31
CUX1-206ENST00000437600 C16orf95Q9H693 158 aa6.84□□□□□ -1.31
CUX1-206ENST00000437600 MGAM2Q2M2H8 2515 aa6.84□□□□□ -1.31
CUX1-206ENST00000437600 TRAV2A0A0B4J234 112 aa6.84□□□□□ -1.32
CUX1-206ENST00000437600 TRBV6-5A0A0K0K1A5 114 aa6.84□□□□□ -1.32
CUX1-206ENST00000437600 J3QQQ9 107 aa6.84□□□□□ -1.32
CUX1-206ENST00000437600 M0R2P5 195 aa6.84□□□□□ -1.32
CUX1-206ENST00000437600 KRTAP24-1Q3LI83 254 aa6.84□□□□□ -1.32
CUX1-206ENST00000437600 C1orf158Q8N1D5 194 aa6.84□□□□□ -1.32
CUX1-206ENST00000437600 A0A0J9YY99 117 aa6.83□□□□□ -1.32
CUX1-206ENST00000437600 Q6ZTI0 123 aa6.83□□□□□ -1.32
CUX1-206ENST00000437600 C11orf72Q8NBR9 251 aa6.83□□□□□ -1.32
CUX1-206ENST00000437600 A0A0U1RRA0 63 aa6.83□□□□□ -1.32
CUX1-206ENST00000437600 ATP6V0E2Q8NHE4 81 aa6.83□□□□□ -1.32
CUX1-206ENST00000437600 TIMM17AQ99595 171 aa6.83□□□□□ -1.32
CUX1-206ENST00000437600 TMEM141Q96I45 108 aa6.82□□□□□ -1.32
CUX1-206ENST00000437600 LINC00467Q9BRT7 94 aa6.82□□□□□ -1.32
CUX1-206ENST00000437600 PF4P02776 101 aa6.82□□□□□ -1.32
CUX1-206ENST00000437600 PRSS2P07478 247 aa6.82□□□□□ -1.32
CUX1-206ENST00000437600 LGALS3P17931 250 aaKnown RBP6.82□□□□□ -1.32
CUX1-206ENST00000437600 CARD19Q96LW7 228 aa6.82□□□□□ -1.32
CUX1-206ENST00000437600 NOP10Q9NPE3 64 aaKnown RBP6.82□□□□□ -1.32
CUX1-206ENST00000437600 ZNF22P17026 224 aaPredicted RBP6.82□□□□□ -1.32
CUX1-206ENST00000437600 SEC61GP60059 68 aa6.82□□□□□ -1.32
CUX1-206ENST00000437600 ZFAND6Q6FIF0 208 aa6.82□□□□□ -1.32
CUX1-206ENST00000437600 HERVK_113P61574 105 aa6.81□□□□□ -1.32
CUX1-206ENST00000437600 DAND5Q8N907 189 aa6.81□□□□□ -1.32
CUX1-206ENST00000437600 PPDPFLQ8WWR9 84 aa6.81□□□□□ -1.32
CUX1-206ENST00000437600 ZNF625Q96I27 306 aaPredicted RBP6.81□□□□□ -1.32
CUX1-206ENST00000437600 DNAJC30Q96LL9 226 aa6.81□□□□□ -1.32
CUX1-206ENST00000437600 RHODO00212 210 aa6.81□□□□□ -1.32
CUX1-206ENST00000437600 ZNF415Q09FC8 603 aa6.81□□□□□ -1.32
CUX1-206ENST00000437600 INSP01308 110 aa6.8□□□□□ -1.32
CUX1-206ENST00000437600 LINC00694P0DN24 101 aa6.8□□□□□ -1.32
CUX1-206ENST00000437600 AMELXQ99217 191 aa6.8□□□□□ -1.32
CUX1-206ENST00000437600 LOC100131303A0A0U1RQF7 123 aa6.8□□□□□ -1.32
CUX1-206ENST00000437600 A8MWV9 139 aa6.8□□□□□ -1.32
CUX1-206ENST00000437600 TEN1Q86WV5 123 aa6.8□□□□□ -1.32
CUX1-206ENST00000437600 CHCHD7Q9BUK0 85 aa6.8□□□□□ -1.32
CUX1-206ENST00000437600 IGKV3OR2-268A0A0C4DH90 116 aa6.79□□□□□ -1.32
CUX1-206ENST00000437600 LOC107984640A0A0U1RRK4 108 aa6.79□□□□□ -1.32
CUX1-206ENST00000437600 TMEM223A0PJW6 202 aa6.79□□□□□ -1.32
CUX1-206ENST00000437600 CFC1BP0CG36 223 aa6.79□□□□□ -1.32
CUX1-206ENST00000437600 CFC1P0CG37 223 aa6.79□□□□□ -1.32
CUX1-206ENST00000437600 C10orf126Q8N4M7 172 aa6.79□□□□□ -1.32
CUX1-206ENST00000437600 TRBV20-1A0A075B6N2 111 aa6.79□□□□□ -1.32
CUX1-206ENST00000437600 KIR2DL5BQ8NHK3 375 aa6.79□□□□□ -1.32
CUX1-206ENST00000437600 EIF4EBP3O60516 100 aaPredicted RBP6.79□□□□□ -1.32
CUX1-206ENST00000437600 IGHV3-30P01768 117 aa6.79□□□□□ -1.32
CUX1-206ENST00000437600 IGHV3-30-3P0DP02 117 aa6.79□□□□□ -1.32
CUX1-206ENST00000437600 IGHV3-30-5P0DP03 117 aa6.79□□□□□ -1.32
CUX1-206ENST00000437600 RHOHQ15669 191 aa6.79□□□□□ -1.32
CUX1-206ENST00000437600 DGAT2L7PQ6IED9 249 aa6.79□□□□□ -1.32
CUX1-206ENST00000437600 FAM19A5Q7Z5A7 132 aaPredicted RBP6.79□□□□□ -1.32
CUX1-206ENST00000437600 MUSTN1Q8IVN3 82 aa6.79□□□□□ -1.32
CUX1-206ENST00000437600 DNHD1Q96M86 4753 aa6.78□□□□□ -1.32
CUX1-206ENST00000437600 TRAV13-1A0A0B4J241 112 aa6.78□□□□□ -1.32
CUX1-206ENST00000437600 IGLV1-51P01701 117 aa6.78□□□□□ -1.32
CUX1-206ENST00000437600 GIG44P09565 113 aaPredicted RBP6.78□□□□□ -1.32
CUX1-206ENST00000437600 COX6A2Q02221 97 aa6.78□□□□□ -1.32
CUX1-206ENST00000437600 ADAMTSL4-AS1Q5T5F5 129 aa6.78□□□□□ -1.32
CUX1-206ENST00000437600 SLC25A29Q8N8R3 303 aa6.78□□□□□ -1.32
CUX1-206ENST00000437600 MRAPQ8TCY5 172 aa6.78□□□□□ -1.32
CUX1-206ENST00000437600 TMEM126AQ9H061 195 aa6.78□□□□□ -1.32
CUX1-206ENST00000437600 TCL1BO95988 128 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 113.4 ms