RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 C20orf78Q9BR46 151 aa7.57□□□□□ -1.2
COL28A1-203ENST00000435823 TRBV24-1A0A075B6N3 115 aa7.56□□□□□ -1.2
COL28A1-203ENST00000435823 C7orf77A4D0Y5 90 aa7.56□□□□□ -1.2
COL28A1-203ENST00000435823 TNFRSF6BO95407 300 aa7.56□□□□□ -1.2
COL28A1-203ENST00000435823 ESDP10768 282 aa7.56□□□□□ -1.2
COL28A1-203ENST00000435823 ORMDL3Q8N138 153 aa7.56□□□□□ -1.2
COL28A1-203ENST00000435823 IGLV10-54A0A075B6I4 117 aa7.55□□□□□ -1.2
COL28A1-203ENST00000435823 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.55□□□□□ -1.2
COL28A1-203ENST00000435823 PHOX2AO14813 284 aa7.55□□□□□ -1.2
COL28A1-203ENST00000435823 TCAPO15273 167 aa7.55□□□□□ -1.2
COL28A1-203ENST00000435823 RPL32P62910 135 aaKnown RBP7.55□□□□□ -1.2
COL28A1-203ENST00000435823 SMAGPQ0VAQ4 97 aa7.55□□□□□ -1.2
COL28A1-203ENST00000435823 TMEM136Q6ZRR5 245 aa7.55□□□□□ -1.2
COL28A1-203ENST00000435823 OR5A1Q8NGJ0 315 aa7.55□□□□□ -1.2
COL28A1-203ENST00000435823 IGKV3OR2-268A0A0C4DH90 116 aa7.54□□□□□ -1.2
COL28A1-203ENST00000435823 NPYP01303 97 aa7.54□□□□□ -1.2
COL28A1-203ENST00000435823 S100PP25815 95 aa7.54□□□□□ -1.2
COL28A1-203ENST00000435823 TMEM18Q96B42 140 aa7.54□□□□□ -1.2
COL28A1-203ENST00000435823 PRELID3AQ96N28 172 aa7.54□□□□□ -1.2
COL28A1-203ENST00000435823 SMIM2Q9BVW6 85 aa7.54□□□□□ -1.2
COL28A1-203ENST00000435823 HERC2O95714 4834 aa7.53□□□□□ -1.2
COL28A1-203ENST00000435823 TRAV9-1A0A075B6T8 112 aa7.53□□□□□ -1.2
COL28A1-203ENST00000435823 USP17L23D6RBM5 183 aa7.53□□□□□ -1.2
COL28A1-203ENST00000435823 KRTAP10-1P60331 282 aa7.53□□□□□ -1.2
COL28A1-203ENST00000435823 DGAT2L7PQ6IED9 249 aa7.53□□□□□ -1.2
COL28A1-203ENST00000435823 MRPL52Q86TS9 123 aaKnown RBP7.53□□□□□ -1.2
COL28A1-203ENST00000435823 CARHSP1Q9Y2V2 147 aaKnown RBP7.53□□□□□ -1.2
COL28A1-203ENST00000435823 C10orf91Q5T1B1 145 aa7.52□□□□□ -1.21
COL28A1-203ENST00000435823 KRTAP26-1Q6PEX3 210 aa7.52□□□□□ -1.21
COL28A1-203ENST00000435823 LAMTOR2Q9Y2Q5 125 aa7.52□□□□□ -1.21
COL28A1-203ENST00000435823 RYR1P21817 5038 aa7.52□□□□□ -1.21
COL28A1-203ENST00000435823 LRP1BQ9NZR2 4599 aa7.52□□□□□ -1.21
COL28A1-203ENST00000435823 RHEBQ15382 184 aa7.51□□□□□ -1.21
COL28A1-203ENST00000435823 NDUFA5Q16718 116 aa7.51□□□□□ -1.21
COL28A1-203ENST00000435823 CLRN3Q8NCR9 226 aa7.51□□□□□ -1.21
COL28A1-203ENST00000435823 RPS10P5Q9NQ39 176 aa7.51□□□□□ -1.21
COL28A1-203ENST00000435823 DNAH5Q8TE73 4624 aa7.5□□□□□ -1.21
COL28A1-203ENST00000435823 GAGE12HA6NDE8 117 aa7.5□□□□□ -1.21
COL28A1-203ENST00000435823 RAB5AP20339 215 aa7.5□□□□□ -1.21
COL28A1-203ENST00000435823 ZNF664Q8N3J9 261 aa7.5□□□□□ -1.21
COL28A1-203ENST00000435823 CHCHD10Q8WYQ3 142 aaPredicted RBP7.5□□□□□ -1.21
COL28A1-203ENST00000435823 MAP1LC3AQ9H492 121 aa7.5□□□□□ -1.21
COL28A1-203ENST00000435823 CDC42SE2Q9NRR3 84 aa7.5□□□□□ -1.21
COL28A1-203ENST00000435823 UBE2D4Q9Y2X8 147 aa7.5□□□□□ -1.21
COL28A1-203ENST00000435823 CSDC2Q9Y534 153 aaKnown RBP7.5□□□□□ -1.21
COL28A1-203ENST00000435823 SS18Q15532 418 aa7.49□□□□□ -1.21
COL28A1-203ENST00000435823 LOC389332A0A1B0GUA5 103 aa7.48□□□□□ -1.21
COL28A1-203ENST00000435823 LINC00959A0A1B0GUT2 108 aa7.48□□□□□ -1.21
COL28A1-203ENST00000435823 PRSS47A8MTI9 375 aa7.48□□□□□ -1.21
COL28A1-203ENST00000435823 APOC3P02656 99 aa7.48□□□□□ -1.21
COL28A1-203ENST00000435823 PRSS1P07477 247 aa7.48□□□□□ -1.21
COL28A1-203ENST00000435823 COX19Q49B96 90 aa7.48□□□□□ -1.21
COL28A1-203ENST00000435823 CFAP161Q6P656 301 aa7.48□□□□□ -1.21
COL28A1-203ENST00000435823 TIMM21Q9BVV7 248 aa7.48□□□□□ -1.21
COL28A1-203ENST00000435823 KRTAP4-11Q9BYQ6 195 aa7.48□□□□□ -1.21
COL28A1-203ENST00000435823 hDV102S1A0JD36 115 aa7.47□□□□□ -1.21
COL28A1-203ENST00000435823 CCL25O15444 150 aa7.47□□□□□ -1.21
COL28A1-203ENST00000435823 XCL1P47992 114 aa7.47□□□□□ -1.21
COL28A1-203ENST00000435823 SVBPQ8N300 66 aa7.47□□□□□ -1.21
COL28A1-203ENST00000435823 Q8N8P6 123 aa7.47□□□□□ -1.21
COL28A1-203ENST00000435823 SPANXA1Q9NS26 97 aa7.47□□□□□ -1.21
COL28A1-203ENST00000435823 AP5S1Q9NUS5 200 aa7.47□□□□□ -1.21
COL28A1-203ENST00000435823 C1orf196B1AJZ1 125 aa7.46□□□□□ -1.22
COL28A1-203ENST00000435823 SNAPINO95295 136 aa7.46□□□□□ -1.22
COL28A1-203ENST00000435823 XGP55808 180 aa7.46□□□□□ -1.22
COL28A1-203ENST00000435823 RPL39P62891 51 aaKnown RBP7.46□□□□□ -1.22
COL28A1-203ENST00000435823 Q6ZUT4 128 aa7.46□□□□□ -1.22
COL28A1-203ENST00000435823 GNB1LQ9BYB4 327 aa7.46□□□□□ -1.22
COL28A1-203ENST00000435823 APOBP04114 4563 aaKnown RBP7.45□□□□□ -1.22
COL28A1-203ENST00000435823 K7EMI3 77 aa7.45□□□□□ -1.22
COL28A1-203ENST00000435823 MT-ND6P03923 174 aa7.45□□□□□ -1.22
COL28A1-203ENST00000435823 IFI27P40305 119 aaPredicted RBP7.45□□□□□ -1.22
COL28A1-203ENST00000435823 FOXI1Q12951 378 aa7.45□□□□□ -1.22
COL28A1-203ENST00000435823 LINC01620Q4KN68 170 aa7.45□□□□□ -1.22
COL28A1-203ENST00000435823 ORMDL2Q53FV1 153 aa7.45□□□□□ -1.22
COL28A1-203ENST00000435823 RNASE13Q5GAN3 156 aaKnown RBP7.45□□□□□ -1.22
COL28A1-203ENST00000435823 CD164L2Q6UWJ8 174 aa7.45□□□□□ -1.22
COL28A1-203ENST00000435823 Q8N1X5 172 aa7.45□□□□□ -1.22
COL28A1-203ENST00000435823 NXT2Q9NPJ8 142 aaKnown RBP7.45□□□□□ -1.22
COL28A1-203ENST00000435823 HSPG2P98160 4391 aa7.44□□□□□ -1.22
COL28A1-203ENST00000435823 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.44□□□□□ -1.22
COL28A1-203ENST00000435823 TRAV13-1A0A0B4J241 112 aa7.44□□□□□ -1.22
COL28A1-203ENST00000435823 MRPS36P82909 103 aaKnown RBP7.44□□□□□ -1.22
COL28A1-203ENST00000435823 KIAA1644Q3SXP7 199 aa7.44□□□□□ -1.22
COL28A1-203ENST00000435823 G0S2P27469 103 aa7.43□□□□□ -1.22
COL28A1-203ENST00000435823 CNBPP62633 177 aaKnown RBP7.43□□□□□ -1.22
COL28A1-203ENST00000435823 HIGD2BQ4VC39 106 aa7.43□□□□□ -1.22
COL28A1-203ENST00000435823 Q6ZSA8 131 aa7.43□□□□□ -1.22
COL28A1-203ENST00000435823 C15orf56Q8N910 161 aa7.43□□□□□ -1.22
COL28A1-203ENST00000435823 C9orf163Q8N9P6 203 aa7.43□□□□□ -1.22
COL28A1-203ENST00000435823 KRTAP17-1Q9BYP8 105 aa7.43□□□□□ -1.22
COL28A1-203ENST00000435823 KRTAP4-5Q9BYR2 181 aa7.43□□□□□ -1.22
COL28A1-203ENST00000435823 MRPL18Q9H0U6 180 aaKnown RBP7.43□□□□□ -1.22
COL28A1-203ENST00000435823 FAM30AQ9NZY2 134 aa7.43□□□□□ -1.22
COL28A1-203ENST00000435823 CYSLTR1Q9Y271 337 aa7.43□□□□□ -1.22
COL28A1-203ENST00000435823 PYGO1Q9Y3Y4 419 aa7.43□□□□□ -1.22
COL28A1-203ENST00000435823 GVQW2A0A096LPI5 108 aaPredicted RBP7.42□□□□□ -1.22
COL28A1-203ENST00000435823 IGHV1-58A0A0C4DH39 117 aa7.42□□□□□ -1.22
COL28A1-203ENST00000435823 MALP21145 153 aa7.42□□□□□ -1.22
COL28A1-203ENST00000435823 HAMPP81172 84 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms