RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 SAA2P0DJI9 122 aaPredicted RBP2.04□□□□□ -2.08
CCDC88A-206ENST00000430086 PI4KAP42356 2102 aa2.04□□□□□ -2.08
CCDC88A-206ENST00000430086 TOP2BQ02880 1626 aa2.04□□□□□ -2.08
CCDC88A-206ENST00000430086 SPINK13Q1W4C9 94 aa2.04□□□□□ -2.08
CCDC88A-206ENST00000430086 RRBP1Q9P2E9 1410 aaKnown RBP2.04□□□□□ -2.08
CCDC88A-206ENST00000430086 ARL2-SNX15V9GYD0 113 aa2.04□□□□□ -2.08
CCDC88A-206ENST00000430086 PLXNA1Q9UIW2 1896 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 PEAK1Q9H792 1746 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 E9PCH4 1651 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 UNC13BO14795 1591 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 DIP2CQ9Y2E4 1556 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 FANCAO15360 1455 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 MAGI2Q86UL8 1455 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 TRBV25-1A0A075B6N4 114 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 IGLC7A0M8Q6 106 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 H7BZZ5 65 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 M0R135 149 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 UQCR11O14957 56 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 NMBP08949 121 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 ACYP2P14621 99 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 ZNF720Q7Z2F6 126 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 BAGE2Q86Y30 109 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 SMIM4Q8WVI0 70 aa2.03□□□□□ -2.08
CCDC88A-206ENST00000430086 EDC4Q6P2E9 1401 aaKnown RBP2.02□□□□□ -2.09
CCDC88A-206ENST00000430086 ZNF815PA8K554 130 aa2.02□□□□□ -2.09
CCDC88A-206ENST00000430086 F2Z2F3 143 aa2.02□□□□□ -2.09
CCDC88A-206ENST00000430086 COX17Q14061 63 aa2.02□□□□□ -2.09
CCDC88A-206ENST00000430086 SBF2Q86WG5 1849 aa2.02□□□□□ -2.09
CCDC88A-206ENST00000430086 MUC6Q6W4X9 2439 aa2.02□□□□□ -2.09
CCDC88A-206ENST00000430086 SPTBP11277 2137 aa2.02□□□□□ -2.09
CCDC88A-206ENST00000430086 TRGV1A0A0A0MS02 117 aa2.01□□□□□ -2.09
CCDC88A-206ENST00000430086 TRAV1-2A0A0B4J238 106 aa2.01□□□□□ -2.09
CCDC88A-206ENST00000430086 ADIRFQ15847 76 aa2.01□□□□□ -2.09
CCDC88A-206ENST00000430086 PSMG4Q5JS54 123 aa2.01□□□□□ -2.09
CCDC88A-206ENST00000430086 BPESC1Q9GZL8 116 aa2.01□□□□□ -2.09
CCDC88A-206ENST00000430086 COL4A1P02462 1669 aa2.01□□□□□ -2.09
CCDC88A-206ENST00000430086 EHBP1L1Q8N3D4 1523 aa2.01□□□□□ -2.09
CCDC88A-206ENST00000430086 PSME4Q14997 1843 aa2.01□□□□□ -2.09
CCDC88A-206ENST00000430086 MYOM1P52179 1685 aa2□□□□□ -2.09
CCDC88A-206ENST00000430086 Q96NJ1 140 aa2□□□□□ -2.09
CCDC88A-206ENST00000430086 CRCT1Q9UGL9 99 aa2□□□□□ -2.09
CCDC88A-206ENST00000430086 LINC01558Q9Y6Z2 57 aa2□□□□□ -2.09
CCDC88A-206ENST00000430086 MON2Q7Z3U7 1717 aa2□□□□□ -2.09
CCDC88A-206ENST00000430086 CLTCQ00610 1675 aaKnown RBP1.99□□□□□ -2.09
CCDC88A-206ENST00000430086 ARFGEF1Q9Y6D6 1849 aa1.99□□□□□ -2.09
CCDC88A-206ENST00000430086 MGPP08493 103 aa1.99□□□□□ -2.09
CCDC88A-206ENST00000430086 FAM223AQ8IWN6 122 aa1.99□□□□□ -2.09
CCDC88A-206ENST00000430086 CACNA1BQ00975 2339 aa1.99□□□□□ -2.09
CCDC88A-206ENST00000430086 ASCC3Q8N3C0 2202 aaKnown RBP1.98□□□□□ -2.09
CCDC88A-206ENST00000430086 SORL1Q92673 2214 aa1.98□□□□□ -2.09
CCDC88A-206ENST00000430086 ABCC2Q92887 1545 aa1.98□□□□□ -2.09
CCDC88A-206ENST00000430086 A0A1B0GWA3 101 aa1.98□□□□□ -2.09
CCDC88A-206ENST00000430086 KANTRA0A1W2PQU2 76 aa1.98□□□□□ -2.09
CCDC88A-206ENST00000430086 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.98□□□□□ -2.09
CCDC88A-206ENST00000430086 SPCS1Q9Y6A9 102 aa1.98□□□□□ -2.09
CCDC88A-206ENST00000430086 IQSEC2Q5JU85 1478 aa1.98□□□□□ -2.09
CCDC88A-206ENST00000430086 DLG5Q8TDM6 1919 aa1.97□□□□□ -2.09
CCDC88A-206ENST00000430086 HMGXB3Q12766 1538 aa1.97□□□□□ -2.09
CCDC88A-206ENST00000430086 FAM223BA6NKX1 122 aa1.97□□□□□ -2.09
CCDC88A-206ENST00000430086 FXYD6P3P58550 94 aa1.97□□□□□ -2.09
CCDC88A-206ENST00000430086 SNRPFP62306 86 aaKnown RBP1.97□□□□□ -2.09
CCDC88A-206ENST00000430086 TDRG1Q3Y452 100 aa1.97□□□□□ -2.09
CCDC88A-206ENST00000430086 ETDBQ3ZM63 59 aa1.97□□□□□ -2.09
CCDC88A-206ENST00000430086 SMIM11BQ8TCY0 68 aa1.97□□□□□ -2.09
CCDC88A-206ENST00000430086 ST20Q9HBF5 79 aa1.97□□□□□ -2.09
CCDC88A-206ENST00000430086 RGPD4Q7Z3J3 1758 aa1.96□□□□□ -2.1
CCDC88A-206ENST00000430086 HMGN3Q15651 99 aa1.96□□□□□ -2.1
CCDC88A-206ENST00000430086 CFAP126Q5VTH2 177 aa1.96□□□□□ -2.1
CCDC88A-206ENST00000430086 HIGD1BQ9P298 99 aa1.96□□□□□ -2.1
CCDC88A-206ENST00000430086 ERVK-7P63135 1459 aa1.95□□□□□ -2.1
CCDC88A-206ENST00000430086 A0A096LNT2 108 aa1.95□□□□□ -2.1
CCDC88A-206ENST00000430086 KDM5DQ9BY66 1539 aa1.95□□□□□ -2.1
CCDC88A-206ENST00000430086 DOCK11Q5JSL3 2073 aa1.95□□□□□ -2.1
CCDC88A-206ENST00000430086 LOC285556D6RIA3 1793 aa1.95□□□□□ -2.1
CCDC88A-206ENST00000430086 SIPA1L3O60292 1781 aaPredicted RBP1.95□□□□□ -2.1
CCDC88A-206ENST00000430086 PPLO60437 1756 aa1.95□□□□□ -2.1
CCDC88A-206ENST00000430086 ACYP1P07311 99 aa1.94□□□□□ -2.1
CCDC88A-206ENST00000430086 ZNF137PP52743 207 aa1.94□□□□□ -2.1
CCDC88A-206ENST00000430086 ALKAL2Q6UX46 152 aa1.94□□□□□ -2.1
CCDC88A-206ENST00000430086 PLAC4Q8WY50 150 aa1.94□□□□□ -2.1
CCDC88A-206ENST00000430086 NLRP1Q9C000 1473 aa1.94□□□□□ -2.1
CCDC88A-206ENST00000430086 ANGP03950 147 aaKnown RBP1.93□□□□□ -2.1
CCDC88A-206ENST00000430086 LYNX1P0DP58 116 aa1.93□□□□□ -2.1
CCDC88A-206ENST00000430086 GCHFRP30047 84 aa1.93□□□□□ -2.1
CCDC88A-206ENST00000430086 MAP3K1Q13233 1512 aa1.92□□□□□ -2.1
CCDC88A-206ENST00000430086 KIF14Q15058 1648 aa1.92□□□□□ -2.1
CCDC88A-206ENST00000430086 MYO3AQ8NEV4 1616 aa1.92□□□□□ -2.1
CCDC88A-206ENST00000430086 SUPT6HQ7KZ85 1726 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-206ENST00000430086 C7orf77A4D0Y5 90 aa1.92□□□□□ -2.1
CCDC88A-206ENST00000430086 M0R3E3 92 aa1.92□□□□□ -2.1
CCDC88A-206ENST00000430086 NMSQ5H8A3 153 aa1.92□□□□□ -2.1
CCDC88A-206ENST00000430086 PRR15LQ9BU68 103 aa1.92□□□□□ -2.1
CCDC88A-206ENST00000430086 ARHGEF5Q12774 1597 aa1.92□□□□□ -2.1
CCDC88A-206ENST00000430086 COL4A6Q14031 1691 aa1.92□□□□□ -2.1
CCDC88A-206ENST00000430086 RGPD3A6NKT7 1758 aaPredicted RBP1.92□□□□□ -2.1
CCDC88A-206ENST00000430086 TECTAO75443 2155 aa1.92□□□□□ -2.1
CCDC88A-206ENST00000430086 CDK13Q14004 1512 aaKnown RBP1.91□□□□□ -2.1
CCDC88A-206ENST00000430086 DCAF1Q9Y4B6 1507 aa1.91□□□□□ -2.1
CCDC88A-206ENST00000430086 MAP3K4Q9Y6R4 1608 aa1.91□□□□□ -2.1
CCDC88A-206ENST00000430086 POLA1P09884 1462 aaPredicted RBP1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms