RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 TRAV10A0A0B4J240 114 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 A0A0J9YY99 117 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 F8VRH5 84 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 H3BNG1 76 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 H7C423 109 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 DPM2O94777 84 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 ZNF25P17030 456 aaPredicted RBP4.18□□□□□ -1.74
HMGB3-202ENST00000419110 ODF1Q14990 250 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 PMVKQ15126 192 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 DGAT2L7PQ6IED9 249 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 Q6ZUT4 128 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 ATOH7Q8N100 152 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 Q8N976 141 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 OR5A1Q8NGJ0 315 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 DEFB104AQ8WTQ1 72 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 BAALCQ8WXS3 180 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 TMEM101Q96IK0 257 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 CHCHD5Q9BSY4 110 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 CHCHD7Q9BUK0 85 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 TIMM21Q9BVV7 248 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 KRTAP4-2Q9BYR5 136 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 PAM16Q9Y3D7 125 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 PYGO1Q9Y3Y4 419 aa4.18□□□□□ -1.74
HMGB3-202ENST00000419110 IGLV4-3A0A075B6K6 122 aa4.17□□□□□ -1.74
HMGB3-202ENST00000419110 TRAV9-2A0A087WT02 112 aa4.17□□□□□ -1.74
HMGB3-202ENST00000419110 DEFB131BA0A096LNP1 70 aa4.17□□□□□ -1.74
HMGB3-202ENST00000419110 TRBV6-8A0A0A6YYG3 113 aa4.17□□□□□ -1.74
HMGB3-202ENST00000419110 IGIPA6NJ69 53 aa4.17□□□□□ -1.74
HMGB3-202ENST00000419110 IGKCP01834 107 aa4.17□□□□□ -1.74
HMGB3-202ENST00000419110 FGF6P10767 208 aa4.17□□□□□ -1.74
HMGB3-202ENST00000419110 NANOS2P60321 138 aaKnown RBP4.17□□□□□ -1.74
HMGB3-202ENST00000419110 HERVK_113P61574 105 aa4.17□□□□□ -1.74
HMGB3-202ENST00000419110 MRPS36P82909 103 aaKnown RBP4.17□□□□□ -1.74
HMGB3-202ENST00000419110 SPATA45Q537H7 98 aa4.17□□□□□ -1.74
HMGB3-202ENST00000419110 MRPL52Q86TS9 123 aaKnown RBP4.17□□□□□ -1.74
HMGB3-202ENST00000419110 PMCHL2Q9BQD1 86 aa4.17□□□□□ -1.74
HMGB3-202ENST00000419110 CHAC1Q9BUX1 264 aa4.17□□□□□ -1.74
HMGB3-202ENST00000419110 Q9UF83 564 aa4.17□□□□□ -1.74
HMGB3-202ENST00000419110 UBE2D4Q9Y2X8 147 aa4.17□□□□□ -1.74
HMGB3-202ENST00000419110 CHTOPQ9Y3Y2 248 aaKnown RBP4.17□□□□□ -1.74
HMGB3-202ENST00000419110 A0A096LPF7 62 aa4.16□□□□□ -1.74
HMGB3-202ENST00000419110 NHLRC4P0CG21 123 aaPredicted RBP4.16□□□□□ -1.74
HMGB3-202ENST00000419110 C15orf53Q8NAA6 179 aa4.16□□□□□ -1.74
HMGB3-202ENST00000419110 VSIG2Q96IQ7 327 aa4.16□□□□□ -1.74
HMGB3-202ENST00000419110 VCX2Q9H322 139 aa4.16□□□□□ -1.74
HMGB3-202ENST00000419110 MRPL35Q9NZE8 188 aaKnown RBP4.16□□□□□ -1.74
HMGB3-202ENST00000419110 HUWE1Q7Z6Z7 4374 aaKnown RBP4.16□□□□□ -1.74
HMGB3-202ENST00000419110 TRAV8-6A0A0B4J262 113 aa4.15□□□□□ -1.75
HMGB3-202ENST00000419110 H3BS24 57 aa4.15□□□□□ -1.75
HMGB3-202ENST00000419110 TIRAPP58753 221 aa4.15□□□□□ -1.75
HMGB3-202ENST00000419110 SEC11AP67812 179 aa4.15□□□□□ -1.75
HMGB3-202ENST00000419110 GAGE6Q13070 117 aa4.15□□□□□ -1.75
HMGB3-202ENST00000419110 LELP1Q5T871 98 aa4.15□□□□□ -1.75
HMGB3-202ENST00000419110 NTM-AS1Q6ZSK4 140 aa4.15□□□□□ -1.75
HMGB3-202ENST00000419110 CSDC2Q9Y534 153 aaKnown RBP4.15□□□□□ -1.75
HMGB3-202ENST00000419110 STAB2Q8WWQ8 2551 aa4.15□□□□□ -1.75
HMGB3-202ENST00000419110 hDV102S1A0JD36 115 aa4.14□□□□□ -1.75
HMGB3-202ENST00000419110 PRSS29PA6NIE9 313 aa4.14□□□□□ -1.75
HMGB3-202ENST00000419110 KRTAP9-7A8MTY7 169 aa4.14□□□□□ -1.75
HMGB3-202ENST00000419110 IGLC3P0DOY3 106 aa4.14□□□□□ -1.75
HMGB3-202ENST00000419110 DEFA6Q01524 100 aa4.14□□□□□ -1.75
HMGB3-202ENST00000419110 RNASE13Q5GAN3 156 aaKnown RBP4.14□□□□□ -1.75
HMGB3-202ENST00000419110 ZC2HC1BQ5TFG8 222 aa4.14□□□□□ -1.75
HMGB3-202ENST00000419110 AMELXQ99217 191 aa4.14□□□□□ -1.75
HMGB3-202ENST00000419110 PRO1933Q9H354 126 aa4.14□□□□□ -1.75
HMGB3-202ENST00000419110 CST9LQ9H4G1 147 aa4.14□□□□□ -1.75
HMGB3-202ENST00000419110 GEMIN7Q9H840 131 aaKnown RBP4.14□□□□□ -1.75
HMGB3-202ENST00000419110 DNAH9Q9NYC9 4486 aa4.14□□□□□ -1.75
HMGB3-202ENST00000419110 IGLV4-69A0A075B6H9 119 aa4.13□□□□□ -1.75
HMGB3-202ENST00000419110 NUPR2A6NF83 97 aa4.13□□□□□ -1.75
HMGB3-202ENST00000419110 C11orf86A6NJI1 115 aa4.13□□□□□ -1.75
HMGB3-202ENST00000419110 PCP4L1A6NKN8 68 aa4.13□□□□□ -1.75
HMGB3-202ENST00000419110 TMEM262E9PQX1 116 aa4.13□□□□□ -1.75
HMGB3-202ENST00000419110 H3BRM9 83 aa4.13□□□□□ -1.75
HMGB3-202ENST00000419110 CRPP02741 224 aa4.13□□□□□ -1.75
HMGB3-202ENST00000419110 NMUP48645 174 aa4.13□□□□□ -1.75
HMGB3-202ENST00000419110 MPV17L2Q567V2 206 aa4.13□□□□□ -1.75
HMGB3-202ENST00000419110 TMEM170BQ5T4T1 132 aa4.13□□□□□ -1.75
HMGB3-202ENST00000419110 CEMP1Q6PRD7 247 aaPredicted RBP4.13□□□□□ -1.75
HMGB3-202ENST00000419110 NFE4Q86UQ8 179 aa4.13□□□□□ -1.75
HMGB3-202ENST00000419110 ZNF664Q8N3J9 261 aa4.13□□□□□ -1.75
HMGB3-202ENST00000419110 LINC00469Q8N7U9 141 aa4.13□□□□□ -1.75
HMGB3-202ENST00000419110 UQCR10Q9UDW1 63 aa4.13□□□□□ -1.75
HMGB3-202ENST00000419110 DNHD1Q96M86 4753 aa4.12□□□□□ -1.75
HMGB3-202ENST00000419110 TINCRA0A1B0GVN0 87 aa4.12□□□□□ -1.75
HMGB3-202ENST00000419110 ZNF22P17026 224 aaPredicted RBP4.12□□□□□ -1.75
HMGB3-202ENST00000419110 UBE2D1P51668 147 aa4.12□□□□□ -1.75
HMGB3-202ENST00000419110 HNRNPA3P51991 378 aaKnown RBP4.12□□□□□ -1.75
HMGB3-202ENST00000419110 RBX1P62877 108 aa4.12□□□□□ -1.75
HMGB3-202ENST00000419110 HERVK_113P63121 156 aa4.12□□□□□ -1.75
HMGB3-202ENST00000419110 MAJINQ3KP22 176 aa4.12□□□□□ -1.75
HMGB3-202ENST00000419110 ANKRD39Q53RE8 183 aa4.12□□□□□ -1.75
HMGB3-202ENST00000419110 SLC25A34Q6PIV7 304 aa4.12□□□□□ -1.75
HMGB3-202ENST00000419110 OPRPNQ99935 248 aaPredicted RBP4.12□□□□□ -1.75
HMGB3-202ENST00000419110 TRAV13-1A0A0B4J241 112 aa4.11□□□□□ -1.75
HMGB3-202ENST00000419110 IGKV3OR2-268A0A0C4DH90 116 aa4.11□□□□□ -1.75
HMGB3-202ENST00000419110 A0A0J9YXV3 536 aa4.11□□□□□ -1.75
HMGB3-202ENST00000419110 A0A1B0GUV1 79 aa4.11□□□□□ -1.75
HMGB3-202ENST00000419110 E9PLD3 99 aa4.11□□□□□ -1.75
HMGB3-202ENST00000419110 ANGP03950 147 aaKnown RBP4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms