RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ESRGQ1W209 222 aa9.76□□□□□ -0.85
COL6A3-206ENST00000409809 SERTAD4-AS1Q5TG53 156 aa9.76□□□□□ -0.85
COL6A3-206ENST00000409809 DEFB112Q30KQ8 113 aa9.76□□□□□ -0.85
COL6A3-206ENST00000409809 IGF2-ASQ6U949 168 aa9.76□□□□□ -0.85
COL6A3-206ENST00000409809 ZNF706Q9Y5V0 76 aaPredicted RBP9.76□□□□□ -0.85
COL6A3-206ENST00000409809 PRO0255Q9UI72 69 aa9.75□□□□□ -0.85
COL6A3-206ENST00000409809 C9orf66Q5T8R8 295 aa9.75□□□□□ -0.85
COL6A3-206ENST00000409809 SP5Q6BEB4 398 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-206ENST00000409809 EBI3Q14213 229 aa9.74□□□□□ -0.85
COL6A3-206ENST00000409809 CELA1Q9UNI1 258 aa9.74□□□□□ -0.85
COL6A3-206ENST00000409809 C5orf56Q8N8D9 126 aa9.74□□□□□ -0.85
COL6A3-206ENST00000409809 IGLV10-54A0A075B6I4 117 aa9.74□□□□□ -0.85
COL6A3-206ENST00000409809 hDV103S1A0JD37 113 aa9.74□□□□□ -0.85
COL6A3-206ENST00000409809 MRGPRG-AS1Q2M3A8 158 aa9.74□□□□□ -0.85
COL6A3-206ENST00000409809 WFDC10BQ8IUB3 73 aa9.74□□□□□ -0.85
COL6A3-206ENST00000409809 FSTL3O95633 263 aa9.74□□□□□ -0.85
COL6A3-206ENST00000409809 MAPKAPK5-AS1Q8N8E1 139 aa9.73□□□□□ -0.85
COL6A3-206ENST00000409809 CDKN2A-AS1Q9UH64 79 aa9.73□□□□□ -0.85
COL6A3-206ENST00000409809 ZNF80P51504 273 aaPredicted RBP9.73□□□□□ -0.85
COL6A3-206ENST00000409809 A0A1B0GW54 56 aa9.73□□□□□ -0.85
COL6A3-206ENST00000409809 PRSS33Q8NF86 280 aa9.73□□□□□ -0.85
COL6A3-206ENST00000409809 M0QY20 66 aa9.72□□□□□ -0.85
COL6A3-206ENST00000409809 INSL3P51460 131 aa9.72□□□□□ -0.85
COL6A3-206ENST00000409809 RUSC1-AS1Q66K80 236 aa9.72□□□□□ -0.85
COL6A3-206ENST00000409809 C4orf3Q8WVX3 66 aa9.72□□□□□ -0.85
COL6A3-206ENST00000409809 C9orf85Q96MD7 179 aa9.72□□□□□ -0.85
COL6A3-206ENST00000409809 PROK2Q9HC23 129 aa9.72□□□□□ -0.85
COL6A3-206ENST00000409809 IGKV1D-37A0A075B6S9 117 aa9.72□□□□□ -0.85
COL6A3-206ENST00000409809 MYCNOSP40205 109 aa9.72□□□□□ -0.85
COL6A3-206ENST00000409809 ARTNQ5T4W7 220 aa9.71□□□□□ -0.86
COL6A3-206ENST00000409809 NTM-AS1Q6ZSK4 140 aa9.71□□□□□ -0.86
COL6A3-206ENST00000409809 FRMD6-AS1P0C7T7 363 aa9.7□□□□□ -0.86
COL6A3-206ENST00000409809 TRBV7-6A0A0J9YX20 115 aa9.7□□□□□ -0.86
COL6A3-206ENST00000409809 PIEZO2Q9H5I5 2752 aa9.7□□□□□ -0.86
COL6A3-206ENST00000409809 LINC00467Q9BRT7 94 aa9.69□□□□□ -0.86
COL6A3-206ENST00000409809 DIAPH2-AS1Q14236 149 aa9.69□□□□□ -0.86
COL6A3-206ENST00000409809 PLAC8L1A1L4L8 177 aa9.69□□□□□ -0.86
COL6A3-206ENST00000409809 REG3AQ06141 175 aa9.69□□□□□ -0.86
COL6A3-206ENST00000409809 ANKRD11Q6UB99 2663 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-206ENST00000409809 IGLV1-47P01700 117 aa9.69□□□□□ -0.86
COL6A3-206ENST00000409809 ODF3L1Q8IXM7 274 aa9.69□□□□□ -0.86
COL6A3-206ENST00000409809 TMEM254Q8TBM7 123 aa9.69□□□□□ -0.86
COL6A3-206ENST00000409809 AJUBAQ96IF1 538 aa9.69□□□□□ -0.86
COL6A3-206ENST00000409809 KLK5Q9Y337 293 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-206ENST00000409809 M0R378 163 aa9.68□□□□□ -0.86
COL6A3-206ENST00000409809 ZNF503-AS2A6NEH8 195 aa9.68□□□□□ -0.86
COL6A3-206ENST00000409809 PRAC2D3DTV9 90 aa9.68□□□□□ -0.86
COL6A3-206ENST00000409809 FAM30AQ9NZY2 134 aa9.68□□□□□ -0.86
COL6A3-206ENST00000409809 C6orf99Q4VX62 202 aa9.67□□□□□ -0.86
COL6A3-206ENST00000409809 LINC00322Q6ZN03 302 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-206ENST00000409809 Q8N9W7 124 aa9.67□□□□□ -0.86
COL6A3-206ENST00000409809 TRBV6-4A0A1B0GX49 114 aa9.67□□□□□ -0.86
COL6A3-206ENST00000409809 C1orf158Q8N1D5 194 aa9.67□□□□□ -0.86
COL6A3-206ENST00000409809 CD164L2Q6UWJ8 174 aa9.66□□□□□ -0.86
COL6A3-206ENST00000409809 NCOR2Q9Y618 2525 aa9.66□□□□□ -0.86
COL6A3-206ENST00000409809 A0A096LPF7 62 aa9.66□□□□□ -0.86
COL6A3-206ENST00000409809 A8MZ25 164 aa9.65□□□□□ -0.86
COL6A3-206ENST00000409809 Q8IZM0 81 aa9.65□□□□□ -0.86
COL6A3-206ENST00000409809 SMIM11BQ8TCY0 68 aa9.65□□□□□ -0.86
COL6A3-206ENST00000409809 ABCA12Q86UK0 2595 aa9.65□□□□□ -0.86
COL6A3-206ENST00000409809 Q8N814 137 aa9.65□□□□□ -0.86
COL6A3-206ENST00000409809 ZFAND3Q9H8U3 227 aa9.65□□□□□ -0.86
COL6A3-206ENST00000409809 ZNF73O43830 326 aaPredicted RBP9.65□□□□□ -0.86
COL6A3-206ENST00000409809 CHCHD10Q8WYQ3 142 aaPredicted RBP9.65□□□□□ -0.86
COL6A3-206ENST00000409809 F8WDY8 70 aa9.65□□□□□ -0.86
COL6A3-206ENST00000409809 HIGD2AQ9BW72 106 aa9.65□□□□□ -0.86
COL6A3-206ENST00000409809 C3orf84H3BNL1 204 aa9.65□□□□□ -0.87
COL6A3-206ENST00000409809 SETD2Q9BYW2 2564 aaPredicted RBP9.65□□□□□ -0.87
COL6A3-206ENST00000409809 IGLV2-11P01706 119 aa9.64□□□□□ -0.87
COL6A3-206ENST00000409809 Q6ZQY7 126 aa9.64□□□□□ -0.87
COL6A3-206ENST00000409809 Q8N3U1 123 aa9.64□□□□□ -0.87
COL6A3-206ENST00000409809 CTSZQ9UBR2 303 aa9.64□□□□□ -0.87
COL6A3-206ENST00000409809 KLK12Q9UKR0 248 aa9.64□□□□□ -0.87
COL6A3-206ENST00000409809 IGF2RP11717 2491 aa9.64□□□□□ -0.87
COL6A3-206ENST00000409809 FN1P02751 2386 aaKnown RBP9.63□□□□□ -0.87
COL6A3-206ENST00000409809 PPDPFQ9H3Y8 114 aa9.63□□□□□ -0.87
COL6A3-206ENST00000409809 TRBV6-8A0A0A6YYG3 113 aa9.63□□□□□ -0.87
COL6A3-206ENST00000409809 ZNF295-AS1Q8N0V1 137 aa9.63□□□□□ -0.87
COL6A3-206ENST00000409809 USP9XQ93008 2570 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-206ENST00000409809 SHISA2Q6UWI4 295 aa9.63□□□□□ -0.87
COL6A3-206ENST00000409809 SCXQ7RTU7 201 aa9.62□□□□□ -0.87
COL6A3-206ENST00000409809 PLA2G2CQ5R387 149 aa9.62□□□□□ -0.87
COL6A3-206ENST00000409809 Q8N6K4 173 aa9.62□□□□□ -0.87
COL6A3-206ENST00000409809 TSHBP01222 138 aa9.61□□□□□ -0.87
COL6A3-206ENST00000409809 POLR2KP53803 58 aaKnown RBP9.61□□□□□ -0.87
COL6A3-206ENST00000409809 SIRPDQ9H106 197 aa9.61□□□□□ -0.87
COL6A3-206ENST00000409809 CDIP1Q9H305 208 aa9.61□□□□□ -0.87
COL6A3-206ENST00000409809 LINC00269Q8N2A0 174 aa9.61□□□□□ -0.87
COL6A3-206ENST00000409809 PKD1L2Q7Z442 2459 aa9.61□□□□□ -0.87
COL6A3-206ENST00000409809 SLPIP03973 132 aa9.6□□□□□ -0.87
COL6A3-206ENST00000409809 H3BPC8 53 aa9.6□□□□□ -0.87
COL6A3-206ENST00000409809 PSPHP1O15172 72 aa9.6□□□□□ -0.87
COL6A3-206ENST00000409809 IL17DQ8TAD2 202 aa9.6□□□□□ -0.87
COL6A3-206ENST00000409809 LINC00474Q9P2X8 69 aa9.6□□□□□ -0.87
COL6A3-206ENST00000409809 SOSTDC1Q6X4U4 206 aa9.6□□□□□ -0.87
COL6A3-206ENST00000409809 LINC00208Q96KT6 92 aa9.6□□□□□ -0.87
COL6A3-206ENST00000409809 LY6HO94772 140 aa9.59□□□□□ -0.87
COL6A3-206ENST00000409809 SPRY2O43597 315 aa9.59□□□□□ -0.87
COL6A3-206ENST00000409809 IGHV4-59P01825 116 aa9.59□□□□□ -0.87
COL6A3-206ENST00000409809 APRG1Q8IVJ8 170 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms