RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 FGF6P10767 208 aa9.81□□□□□ -0.84
SKA1-202ENST00000398452 ZNF25P17030 456 aaPredicted RBP9.81□□□□□ -0.84
SKA1-202ENST00000398452 RPL39P62891 51 aaKnown RBP9.81□□□□□ -0.84
SKA1-202ENST00000398452 IFI27L1Q96BM0 104 aa9.81□□□□□ -0.84
SKA1-202ENST00000398452 TIMM17AQ99595 171 aa9.81□□□□□ -0.84
SKA1-202ENST00000398452 PRSS1P07477 247 aa9.8□□□□□ -0.84
SKA1-202ENST00000398452 ESRGQ1W209 222 aa9.8□□□□□ -0.84
SKA1-202ENST00000398452 TIMM21Q9BVV7 248 aa9.8□□□□□ -0.84
SKA1-202ENST00000398452 A0A096LNJ9 63 aa9.79□□□□□ -0.84
SKA1-202ENST00000398452 C20orf202A1L168 122 aa9.79□□□□□ -0.84
SKA1-202ENST00000398452 NPSP0C0P6 89 aa9.79□□□□□ -0.84
SKA1-202ENST00000398452 AKR1D1P51857 326 aa9.79□□□□□ -0.84
SKA1-202ENST00000398452 KRTDAPP60985 99 aa9.79□□□□□ -0.84
SKA1-202ENST00000398452 C2orf88Q9BSF0 95 aa9.79□□□□□ -0.84
SKA1-202ENST00000398452 APLNQ9ULZ1 77 aa9.79□□□□□ -0.84
SKA1-202ENST00000398452 UBE2D4Q9Y2X8 147 aa9.79□□□□□ -0.84
SKA1-202ENST00000398452 PYGO1Q9Y3Y4 419 aa9.79□□□□□ -0.84
SKA1-202ENST00000398452 H0Y8G0 127 aa9.78□□□□□ -0.84
SKA1-202ENST00000398452 LCE3BQ5TA77 95 aa9.78□□□□□ -0.84
SKA1-202ENST00000398452 MRPL52Q86TS9 123 aaKnown RBP9.78□□□□□ -0.84
SKA1-202ENST00000398452 OR10D4PQ8NGN7 298 aa9.78□□□□□ -0.84
SKA1-202ENST00000398452 SVIPQ8NHG7 77 aa9.78□□□□□ -0.84
SKA1-202ENST00000398452 VCX2Q9H322 139 aa9.78□□□□□ -0.84
SKA1-202ENST00000398452 TEX43Q6ZNM6 134 aa9.77□□□□□ -0.85
SKA1-202ENST00000398452 MRPS16Q9Y3D3 137 aaKnown RBP9.77□□□□□ -0.85
SKA1-202ENST00000398452 CSDC2Q9Y534 153 aaKnown RBP9.77□□□□□ -0.85
SKA1-202ENST00000398452 LCE6AA0A183 80 aa9.76□□□□□ -0.85
SKA1-202ENST00000398452 IGIPA6NJ69 53 aa9.76□□□□□ -0.85
SKA1-202ENST00000398452 DNAH7Q8WXX0 4024 aa9.76□□□□□ -0.85
SKA1-202ENST00000398452 A0A1B0GUV1 79 aa9.75□□□□□ -0.85
SKA1-202ENST00000398452 ANGP03950 147 aaKnown RBP9.75□□□□□ -0.85
SKA1-202ENST00000398452 RBX1P62877 108 aa9.75□□□□□ -0.85
SKA1-202ENST00000398452 MRPS36P82909 103 aaKnown RBP9.75□□□□□ -0.85
SKA1-202ENST00000398452 PMVKQ15126 192 aa9.75□□□□□ -0.85
SKA1-202ENST00000398452 PET117Q6UWS5 81 aa9.75□□□□□ -0.85
SKA1-202ENST00000398452 ZNF664Q8N3J9 261 aa9.75□□□□□ -0.85
SKA1-202ENST00000398452 LINC00588Q9Y4M8 146 aa9.75□□□□□ -0.85
SKA1-202ENST00000398452 IGLV4-3A0A075B6K6 122 aa9.74□□□□□ -0.85
SKA1-202ENST00000398452 TRAV9-2A0A087WT02 112 aa9.74□□□□□ -0.85
SKA1-202ENST00000398452 SYS1-DBNDD2H3BUS1 97 aa9.74□□□□□ -0.85
SKA1-202ENST00000398452 SIVA1O15304 175 aa9.74□□□□□ -0.85
SKA1-202ENST00000398452 CRPP02741 224 aa9.74□□□□□ -0.85
SKA1-202ENST00000398452 MPV17L2Q567V2 206 aa9.74□□□□□ -0.85
SKA1-202ENST00000398452 LINC00173Q6ZV60 143 aa9.74□□□□□ -0.85
SKA1-202ENST00000398452 WFDC10BQ8IUB3 73 aa9.74□□□□□ -0.85
SKA1-202ENST00000398452 BAALCQ8WXS3 180 aa9.74□□□□□ -0.85
SKA1-202ENST00000398452 IFITM10A6NMD0 228 aa9.73□□□□□ -0.85
SKA1-202ENST00000398452 IGHV3-30P01768 117 aa9.73□□□□□ -0.85
SKA1-202ENST00000398452 IGHV3-33P01772 117 aa9.73□□□□□ -0.85
SKA1-202ENST00000398452 C3orf79P0CE67 100 aa9.73□□□□□ -0.85
SKA1-202ENST00000398452 IGHV3-30-3P0DP02 117 aa9.73□□□□□ -0.85
SKA1-202ENST00000398452 IGHV3-30-5P0DP03 117 aa9.73□□□□□ -0.85
SKA1-202ENST00000398452 Q6ZUT4 128 aa9.73□□□□□ -0.85
SKA1-202ENST00000398452 Q8N976 141 aa9.73□□□□□ -0.85
SKA1-202ENST00000398452 UPK3BQ9BT76 320 aa9.73□□□□□ -0.85
SKA1-202ENST00000398452 CDC42SE2Q9NRR3 84 aa9.73□□□□□ -0.85
SKA1-202ENST00000398452 TRAV12-1A0A0B4J245 112 aa9.72□□□□□ -0.85
SKA1-202ENST00000398452 IGKV3OR2-268A0A0C4DH90 116 aa9.72□□□□□ -0.85
SKA1-202ENST00000398452 SCGB1D1O95968 90 aa9.72□□□□□ -0.85
SKA1-202ENST00000398452 OPRPNQ99935 248 aaPredicted RBP9.72□□□□□ -0.85
SKA1-202ENST00000398452 CHTOPQ9Y3Y2 248 aaKnown RBP9.72□□□□□ -0.85
SKA1-202ENST00000398452 DYNC2H1Q8NCM8 4307 aaKnown RBP9.72□□□□□ -0.85
SKA1-202ENST00000398452 PRSS29PA6NIE9 313 aa9.71□□□□□ -0.86
SKA1-202ENST00000398452 SEC11AP67812 179 aa9.71□□□□□ -0.86
SKA1-202ENST00000398452 RNASE13Q5GAN3 156 aaKnown RBP9.71□□□□□ -0.86
SKA1-202ENST00000398452 LINC01556Q5JQF7 62 aa9.71□□□□□ -0.86
SKA1-202ENST00000398452 C10orf126Q8N4M7 172 aa9.71□□□□□ -0.86
SKA1-202ENST00000398452 CSMD3Q7Z407 3707 aa9.7□□□□□ -0.86
SKA1-202ENST00000398452 IGLV4-60A0A075B6I1 120 aa9.7□□□□□ -0.86
SKA1-202ENST00000398452 DNAH10OSP0CZ25 163 aa9.7□□□□□ -0.86
SKA1-202ENST00000398452 SS18Q15532 418 aa9.7□□□□□ -0.86
SKA1-202ENST00000398452 LGALS9CQ6DKI2 356 aa9.7□□□□□ -0.86
SKA1-202ENST00000398452 SPATA12Q7Z6I5 190 aa9.7□□□□□ -0.86
SKA1-202ENST00000398452 CST9LQ9H4G1 147 aa9.7□□□□□ -0.86
SKA1-202ENST00000398452 Q9H8V8 135 aa9.7□□□□□ -0.86
SKA1-202ENST00000398452 KLK12Q9UKR0 248 aa9.7□□□□□ -0.86
SKA1-202ENST00000398452 TRAV13-1A0A0B4J241 112 aa9.69□□□□□ -0.86
SKA1-202ENST00000398452 F8VRH5 84 aa9.69□□□□□ -0.86
SKA1-202ENST00000398452 REG3AQ06141 175 aa9.69□□□□□ -0.86
SKA1-202ENST00000398452 LINC00269Q8N2A0 174 aa9.69□□□□□ -0.86
SKA1-202ENST00000398452 AMELXQ99217 191 aa9.69□□□□□ -0.86
SKA1-202ENST00000398452 GEMIN7Q9H840 131 aaKnown RBP9.69□□□□□ -0.86
SKA1-202ENST00000398452 K7EP13 123 aa9.68□□□□□ -0.86
SKA1-202ENST00000398452 CCL25O15444 150 aa9.68□□□□□ -0.86
SKA1-202ENST00000398452 CLPSL2Q6UWE3 100 aa9.68□□□□□ -0.86
SKA1-202ENST00000398452 UBE2WQ96B02 151 aa9.68□□□□□ -0.86
SKA1-202ENST00000398452 RYR2Q92736 4967 aa9.68□□□□□ -0.86
SKA1-202ENST00000398452 LOC105371267A0A1B0GV96 52 aa9.67□□□□□ -0.86
SKA1-202ENST00000398452 DPM2O94777 84 aa9.67□□□□□ -0.86
SKA1-202ENST00000398452 PLNP26678 52 aa9.67□□□□□ -0.86
SKA1-202ENST00000398452 ODF1Q14990 250 aa9.67□□□□□ -0.86
SKA1-202ENST00000398452 ZC2HC1BQ5TFG8 222 aa9.67□□□□□ -0.86
SKA1-202ENST00000398452 LINC01545Q5VT33 79 aa9.67□□□□□ -0.86
SKA1-202ENST00000398452 KRTAP19-1Q8IUB9 90 aa9.67□□□□□ -0.86
SKA1-202ENST00000398452 STARD9Q9P2P6 4700 aa9.67□□□□□ -0.86
SKA1-202ENST00000398452 HSBP1L1C9JCN9 74 aa9.66□□□□□ -0.86
SKA1-202ENST00000398452 IGKCP01834 107 aa9.66□□□□□ -0.86
SKA1-202ENST00000398452 JOSD1Q15040 202 aaPredicted RBP9.66□□□□□ -0.86
SKA1-202ENST00000398452 TTC32Q5I0X7 151 aa9.66□□□□□ -0.86
SKA1-202ENST00000398452 RMI2Q96E14 147 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms