RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 PAPPA-AS1Q5QFB9 102 aa10.06□□□□□ -0.8
SNCA-204ENST00000394989 SHISA2Q6UWI4 295 aa10.06□□□□□ -0.8
SNCA-204ENST00000394989 C19orf73Q9NVV2 129 aa10.06□□□□□ -0.8
SNCA-204ENST00000394989 TNFRSF18Q9Y5U5 241 aa10.06□□□□□ -0.8
SNCA-204ENST00000394989 RS1O15537 224 aa10.06□□□□□ -0.8
SNCA-204ENST00000394989 NDUFA7O95182 113 aa10.06□□□□□ -0.8
SNCA-204ENST00000394989 IGHV3-53P01767 116 aa10.06□□□□□ -0.8
SNCA-204ENST00000394989 GAGE5Q13069 117 aa10.06□□□□□ -0.8
SNCA-204ENST00000394989 GAGE6Q13070 117 aa10.06□□□□□ -0.8
SNCA-204ENST00000394989 TSPEAR-AS2P59090 65 aa10.05□□□□□ -0.8
SNCA-204ENST00000394989 HERV-K104P63124 156 aa10.05□□□□□ -0.8
SNCA-204ENST00000394989 NDUFA11Q86Y39 141 aa10.05□□□□□ -0.8
SNCA-204ENST00000394989 NOTCH2Q04721 2471 aa10.04□□□□□ -0.8
SNCA-204ENST00000394989 LY6G6DO95868 133 aa10.04□□□□□ -0.8
SNCA-204ENST00000394989 CEMP1Q6PRD7 247 aaPredicted RBP10.04□□□□□ -0.8
SNCA-204ENST00000394989 RHODO00212 210 aa10.04□□□□□ -0.8
SNCA-204ENST00000394989 GAGE2BQ13066 116 aa10.04□□□□□ -0.8
SNCA-204ENST00000394989 GAGE2EQ4V326 116 aa10.04□□□□□ -0.8
SNCA-204ENST00000394989 GAGE2DQ9UEU5 116 aa10.04□□□□□ -0.8
SNCA-204ENST00000394989 CFC1BP0CG36 223 aa10.04□□□□□ -0.8
SNCA-204ENST00000394989 CFC1P0CG37 223 aa10.04□□□□□ -0.8
SNCA-204ENST00000394989 TTC32Q5I0X7 151 aa10.04□□□□□ -0.8
SNCA-204ENST00000394989 NTN5Q8WTR8 489 aaPredicted RBP10.04□□□□□ -0.8
SNCA-204ENST00000394989 NSD1Q96L73 2696 aaPredicted RBP10.04□□□□□ -0.8
SNCA-204ENST00000394989 CHCHD7Q9BUK0 85 aa10.04□□□□□ -0.8
SNCA-204ENST00000394989 SLC25A20O43772 301 aa10.03□□□□□ -0.8
SNCA-204ENST00000394989 SNCGO76070 127 aa10.03□□□□□ -0.8
SNCA-204ENST00000394989 NPC2P61916 151 aa10.03□□□□□ -0.8
SNCA-204ENST00000394989 PYGO1Q9Y3Y4 419 aa10.03□□□□□ -0.8
SNCA-204ENST00000394989 IGHV3-38A0A0C4DH36 116 aa10.02□□□□□ -0.8
SNCA-204ENST00000394989 TENM1Q9UKZ4 2725 aa10.02□□□□□ -0.81
SNCA-204ENST00000394989 TRGV1A0A0A0MS02 117 aa10.02□□□□□ -0.81
SNCA-204ENST00000394989 AMELXQ99217 191 aa10.02□□□□□ -0.81
SNCA-204ENST00000394989 Q6ZTI0 123 aa10.02□□□□□ -0.81
SNCA-204ENST00000394989 C2CD3Q4AC94 2353 aa10.01□□□□□ -0.81
SNCA-204ENST00000394989 A0A0J9YXV3 536 aa10.01□□□□□ -0.81
SNCA-204ENST00000394989 TEX49A0A1B0GTD5 131 aa10.01□□□□□ -0.81
SNCA-204ENST00000394989 UBE2D1P51668 147 aa10.01□□□□□ -0.81
SNCA-204ENST00000394989 HERVK_113P61574 105 aa10.01□□□□□ -0.81
SNCA-204ENST00000394989 TMEM263Q8WUH6 116 aaKnown RBP10.01□□□□□ -0.81
SNCA-204ENST00000394989 VCX2Q9H322 139 aa10.01□□□□□ -0.81
SNCA-204ENST00000394989 NHLRC4P0CG21 123 aaPredicted RBP10.01□□□□□ -0.81
SNCA-204ENST00000394989 FAM110AQ9BQ89 295 aa10.01□□□□□ -0.81
SNCA-204ENST00000394989 TMEM223A0PJW6 202 aa10□□□□□ -0.81
SNCA-204ENST00000394989 PLAC8L1A1L4L8 177 aa10□□□□□ -0.81
SNCA-204ENST00000394989 ZNF22P17026 224 aaPredicted RBP10□□□□□ -0.81
SNCA-204ENST00000394989 RNASE13Q5GAN3 156 aaKnown RBP10□□□□□ -0.81
SNCA-204ENST00000394989 DNAJC30Q96LL9 226 aa10□□□□□ -0.81
SNCA-204ENST00000394989 UBE2D4Q9Y2X8 147 aa10□□□□□ -0.81
SNCA-204ENST00000394989 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10□□□□□ -0.81
SNCA-204ENST00000394989 A0A0J9YY99 117 aa10□□□□□ -0.81
SNCA-204ENST00000394989 IGKV2-29A2NJV5 120 aaPredicted RBP10□□□□□ -0.81
SNCA-204ENST00000394989 RPL35AP18077 110 aaKnown RBP10□□□□□ -0.81
SNCA-204ENST00000394989 UBE2D3P61077 147 aa10□□□□□ -0.81
SNCA-204ENST00000394989 UBE2D2P62837 147 aa10□□□□□ -0.81
SNCA-204ENST00000394989 A4D1N5 150 aa10□□□□□ -0.81
SNCA-204ENST00000394989 CSNK1G2-AS1Q8NCQ2 148 aa10□□□□□ -0.81
SNCA-204ENST00000394989 ATP6V0E2Q8NHE4 81 aa10□□□□□ -0.81
SNCA-204ENST00000394989 PRSS2P07478 247 aa9.99□□□□□ -0.81
SNCA-204ENST00000394989 CMC4P56277 68 aaPredicted RBP9.99□□□□□ -0.81
SNCA-204ENST00000394989 C10orf126Q8N4M7 172 aa9.99□□□□□ -0.81
SNCA-204ENST00000394989 PRO1854Q9UHT4 67 aa9.99□□□□□ -0.81
SNCA-204ENST00000394989 J3QQQ9 107 aa9.98□□□□□ -0.81
SNCA-204ENST00000394989 NOP10Q9NPE3 64 aaKnown RBP9.98□□□□□ -0.81
SNCA-204ENST00000394989 HIVEP1P15822 2718 aa9.98□□□□□ -0.81
SNCA-204ENST00000394989 NDUFV3P56181 108 aaKnown RBP9.98□□□□□ -0.81
SNCA-204ENST00000394989 MRPS36P82909 103 aaKnown RBP9.97□□□□□ -0.81
SNCA-204ENST00000394989 LYRM7Q5U5X0 104 aa9.97□□□□□ -0.81
SNCA-204ENST00000394989 INAFM1C9JVW0 142 aa9.97□□□□□ -0.81
SNCA-204ENST00000394989 GAGE12JA6NER3 117 aa9.96□□□□□ -0.81
SNCA-204ENST00000394989 GAGE7O76087 117 aa9.96□□□□□ -0.81
SNCA-204ENST00000394989 GAGE12FP0CL80 117 aa9.96□□□□□ -0.81
SNCA-204ENST00000394989 GAGE12GP0CL81 117 aa9.96□□□□□ -0.81
SNCA-204ENST00000394989 GAGE12IP0CL82 117 aa9.96□□□□□ -0.81
SNCA-204ENST00000394989 GAGE4Q13068 117 aa9.96□□□□□ -0.81
SNCA-204ENST00000394989 DAZ2Q13117 558 aaKnown RBP9.96□□□□□ -0.81
SNCA-204ENST00000394989 LGALS3P17931 250 aaKnown RBP9.96□□□□□ -0.82
SNCA-204ENST00000394989 LINC00482Q8N8I6 264 aa9.96□□□□□ -0.82
SNCA-204ENST00000394989 SPANXA1Q9NS26 97 aa9.96□□□□□ -0.82
SNCA-204ENST00000394989 LEPROTO15243 131 aa9.96□□□□□ -0.82
SNCA-204ENST00000394989 IGHV3-30P01768 117 aa9.96□□□□□ -0.82
SNCA-204ENST00000394989 IGHV3-30-5P0DP03 117 aa9.96□□□□□ -0.82
SNCA-204ENST00000394989 C15orf53Q8NAA6 179 aa9.96□□□□□ -0.82
SNCA-204ENST00000394989 SPATA3Q8NHX4 192 aa9.96□□□□□ -0.82
SNCA-204ENST00000394989 TRRAPQ9Y4A5 3859 aa9.95□□□□□ -0.82
SNCA-204ENST00000394989 SLC25A29Q8N8R3 303 aa9.95□□□□□ -0.82
SNCA-204ENST00000394989 K7EQD1 137 aa9.95□□□□□ -0.82
SNCA-204ENST00000394989 IFITM1P13164 125 aa9.95□□□□□ -0.82
SNCA-204ENST00000394989 FN1P02751 2386 aaKnown RBP9.95□□□□□ -0.82
SNCA-204ENST00000394989 TMEM262E9PQX1 116 aa9.94□□□□□ -0.82
SNCA-204ENST00000394989 MUSTN1Q8IVN3 82 aa9.94□□□□□ -0.82
SNCA-204ENST00000394989 C16orf74Q96GX8 76 aa9.94□□□□□ -0.82
SNCA-204ENST00000394989 PF4P02776 101 aa9.93□□□□□ -0.82
SNCA-204ENST00000394989 NTM-AS1Q6ZSK4 140 aa9.93□□□□□ -0.82
SNCA-204ENST00000394989 LINC00694P0DN24 101 aa9.93□□□□□ -0.82
SNCA-204ENST00000394989 CHCHD5Q9BSY4 110 aa9.93□□□□□ -0.82
SNCA-204ENST00000394989 NBEAL2Q6ZNJ1 2754 aa9.92□□□□□ -0.82
SNCA-204ENST00000394989 TRAV8-3A0A0A6YYJ7 113 aa9.92□□□□□ -0.82
SNCA-204ENST00000394989 TRAV8-4A0A0B4J246 113 aa9.92□□□□□ -0.82
SNCA-204ENST00000394989 TRBV10-1A0A0K0K1A3 114 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms