RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 IMUPQ9GZP8 106 aa11.49□□□□□ -0.57
CKAP4-201ENST00000378026 IGHV4-61A0A0C4DH41 118 aa11.49□□□□□ -0.57
CKAP4-201ENST00000378026 SPTBN4Q9H254 2564 aa11.49□□□□□ -0.57
CKAP4-201ENST00000378026 TIMM17BO60830 172 aa11.49□□□□□ -0.57
CKAP4-201ENST00000378026 KLRB1Q12918 225 aa11.49□□□□□ -0.57
CKAP4-201ENST00000378026 UQCRQO14949 82 aa11.48□□□□□ -0.57
CKAP4-201ENST00000378026 DEFB131AP59861 70 aa11.47□□□□□ -0.57
CKAP4-201ENST00000378026 IGHV3OR16-12A0A075B7B8 117 aa11.47□□□□□ -0.57
CKAP4-201ENST00000378026 SDIM1Q6ZPB5 146 aa11.46□□□□□ -0.57
CKAP4-201ENST00000378026 CFHR3Q02985 330 aa11.45□□□□□ -0.58
CKAP4-201ENST00000378026 LINC00242Q5T6M2 205 aa11.45□□□□□ -0.58
CKAP4-201ENST00000378026 C22orf24Q9Y442 160 aa11.45□□□□□ -0.58
CKAP4-201ENST00000378026 CENPEQ02224 2701 aa11.45□□□□□ -0.58
CKAP4-201ENST00000378026 IGKV3D-7A0A0C4DH55 119 aa11.44□□□□□ -0.58
CKAP4-201ENST00000378026 LINC00526Q96FQ7 95 aa11.44□□□□□ -0.58
CKAP4-201ENST00000378026 DNAJC30Q96LL9 226 aa11.44□□□□□ -0.58
CKAP4-201ENST00000378026 hADV29S1A0JD25 119 aa11.44□□□□□ -0.58
CKAP4-201ENST00000378026 BEAN1Q3B7T3 259 aa11.44□□□□□ -0.58
CKAP4-201ENST00000378026 PSMB8P28062 276 aa11.43□□□□□ -0.58
CKAP4-201ENST00000378026 PIMREGQ9BSJ6 248 aa11.43□□□□□ -0.58
CKAP4-201ENST00000378026 CSDC2Q9Y534 153 aaKnown RBP11.43□□□□□ -0.58
CKAP4-201ENST00000378026 NRGNQ92686 78 aa11.43□□□□□ -0.58
CKAP4-201ENST00000378026 C9orf129Q5T035 196 aaKnown RBP11.42□□□□□ -0.58
CKAP4-201ENST00000378026 PEMTQ9UBM1 199 aa11.42□□□□□ -0.58
CKAP4-201ENST00000378026 SMIM1B2RUZ4 78 aa11.42□□□□□ -0.58
CKAP4-201ENST00000378026 TRACP01848 142 aa11.42□□□□□ -0.58
CKAP4-201ENST00000378026 COX7CP15954 63 aa11.42□□□□□ -0.58
CKAP4-201ENST00000378026 C14orf132Q9NPU4 83 aa11.42□□□□□ -0.58
CKAP4-201ENST00000378026 USP9YO00507 2555 aaPredicted RBP11.41□□□□□ -0.58
CKAP4-201ENST00000378026 RBMY1BA6NDE4 496 aaKnown RBP11.41□□□□□ -0.58
CKAP4-201ENST00000378026 RBMY1EA6NEQ0 496 aaKnown RBP11.41□□□□□ -0.58
CKAP4-201ENST00000378026 RBMY1DP0C7P1 496 aaKnown RBP11.41□□□□□ -0.58
CKAP4-201ENST00000378026 CYSTM1Q9H1C7 97 aa11.41□□□□□ -0.58
CKAP4-201ENST00000378026 ZANQ9Y493 2812 aa11.41□□□□□ -0.58
CKAP4-201ENST00000378026 AVPP01185 164 aa11.41□□□□□ -0.58
CKAP4-201ENST00000378026 IGHV4-59P01825 116 aa11.41□□□□□ -0.58
CKAP4-201ENST00000378026 MALP21145 153 aa11.41□□□□□ -0.58
CKAP4-201ENST00000378026 IGHV3-53P01767 116 aa11.41□□□□□ -0.58
CKAP4-201ENST00000378026 ZNF415Q09FC8 603 aa11.41□□□□□ -0.58
CKAP4-201ENST00000378026 DEFB136Q30KP8 78 aa11.41□□□□□ -0.58
CKAP4-201ENST00000378026 IGLV5-45A0A087WSX0 123 aa11.4□□□□□ -0.58
CKAP4-201ENST00000378026 C19orf84I3L1E1 186 aa11.4□□□□□ -0.58
CKAP4-201ENST00000378026 C5orf38Q86SI9 138 aa11.4□□□□□ -0.58
CKAP4-201ENST00000378026 A0A087WVE0 104 aa11.4□□□□□ -0.58
CKAP4-201ENST00000378026 IGKV3OR2-268A0A0C4DH90 116 aa11.4□□□□□ -0.58
CKAP4-201ENST00000378026 IGLV5-39A0A0G2JS06 123 aa11.4□□□□□ -0.58
CKAP4-201ENST00000378026 FAM19A5Q7Z5A7 132 aaPredicted RBP11.4□□□□□ -0.58
CKAP4-201ENST00000378026 ATP5G1P05496 136 aa11.39□□□□□ -0.59
CKAP4-201ENST00000378026 ATP5J2P56134 94 aa11.39□□□□□ -0.59
CKAP4-201ENST00000378026 TOMM7Q9P0U1 55 aa11.39□□□□□ -0.59
CKAP4-201ENST00000378026 DNAL4O96015 105 aa11.39□□□□□ -0.59
CKAP4-201ENST00000378026 INAFM2P0DMQ5 153 aa11.39□□□□□ -0.59
CKAP4-201ENST00000378026 HIST2H2BDQ6DRA6 164 aa11.39□□□□□ -0.59
CKAP4-201ENST00000378026 C2orf48Q96LS8 159 aa11.38□□□□□ -0.59
CKAP4-201ENST00000378026 A0A087WYN8 130 aa11.38□□□□□ -0.59
CKAP4-201ENST00000378026 LY6DQ14210 128 aa11.38□□□□□ -0.59
CKAP4-201ENST00000378026 HIST2H2BCQ6DN03 193 aa11.38□□□□□ -0.59
CKAP4-201ENST00000378026 A0A1B0GX51 115 aa11.37□□□□□ -0.59
CKAP4-201ENST00000378026 J3KT08 172 aa11.37□□□□□ -0.59
CKAP4-201ENST00000378026 UTP20O75691 2785 aaKnown RBP11.37□□□□□ -0.59
CKAP4-201ENST00000378026 CRPP02741 224 aa11.37□□□□□ -0.59
CKAP4-201ENST00000378026 POLQO75417 2590 aa11.37□□□□□ -0.59
CKAP4-201ENST00000378026 CXCL5P42830 114 aa11.37□□□□□ -0.59
CKAP4-201ENST00000378026 LINC00337Q8N6G1 96 aa11.37□□□□□ -0.59
CKAP4-201ENST00000378026 COPS9Q8WXC6 57 aa11.37□□□□□ -0.59
CKAP4-201ENST00000378026 SLURP1P55000 103 aa11.36□□□□□ -0.59
CKAP4-201ENST00000378026 IGHV4-30-2A0A087WSY4 118 aa11.36□□□□□ -0.59
CKAP4-201ENST00000378026 C18orf65Q6ZTR6 163 aa11.36□□□□□ -0.59
CKAP4-201ENST00000378026 MIR7-3HGQ8N6C7 128 aa11.36□□□□□ -0.59
CKAP4-201ENST00000378026 KIR2DL5BQ8NHK3 375 aa11.36□□□□□ -0.59
CKAP4-201ENST00000378026 Q96MF0 132 aa11.35□□□□□ -0.59
CKAP4-201ENST00000378026 WNK1Q9H4A3 2382 aa11.35□□□□□ -0.59
CKAP4-201ENST00000378026 MYO9AB2RTY4 2548 aa11.35□□□□□ -0.59
CKAP4-201ENST00000378026 SETD2Q9BYW2 2564 aaPredicted RBP11.35□□□□□ -0.59
CKAP4-201ENST00000378026 SLPIP03973 132 aa11.35□□□□□ -0.59
CKAP4-201ENST00000378026 UBE2E2Q96LR5 201 aa11.35□□□□□ -0.59
CKAP4-201ENST00000378026 XCL2Q9UBD3 114 aa11.35□□□□□ -0.59
CKAP4-201ENST00000378026 ATOX1O00244 68 aa11.34□□□□□ -0.59
CKAP4-201ENST00000378026 DEFB112Q30KQ8 113 aa11.34□□□□□ -0.59
CKAP4-201ENST00000378026 TRGV1A0A0A0MS02 117 aa11.34□□□□□ -0.59
CKAP4-201ENST00000378026 SND1-IT1Q9HBX3 110 aa11.34□□□□□ -0.59
CKAP4-201ENST00000378026 LINC00846Q9NV44 126 aa11.34□□□□□ -0.59
CKAP4-201ENST00000378026 NCR3O14931 201 aa11.33□□□□□ -0.6
CKAP4-201ENST00000378026 C11orf72Q8NBR9 251 aa11.33□□□□□ -0.6
CKAP4-201ENST00000378026 MSMBP08118 114 aa11.33□□□□□ -0.6
CKAP4-201ENST00000378026 LINC00158P58513 81 aa11.33□□□□□ -0.6
CKAP4-201ENST00000378026 FAM222AQ5U5X8 452 aa11.33□□□□□ -0.6
CKAP4-201ENST00000378026 NTM-AS1Q6ZSK4 140 aa11.33□□□□□ -0.6
CKAP4-201ENST00000378026 SMIM11BQ8TCY0 68 aa11.33□□□□□ -0.6
CKAP4-201ENST00000378026 SMIM9A6NGZ8 99 aa11.32□□□□□ -0.6
CKAP4-201ENST00000378026 TRAV13-2A0A0B4J235 113 aa11.32□□□□□ -0.6
CKAP4-201ENST00000378026 CRYGAP11844 174 aa11.32□□□□□ -0.6
CKAP4-201ENST00000378026 IGKV2-28A0A075B6P5 120 aa11.32□□□□□ -0.6
CKAP4-201ENST00000378026 F5H768 121 aa11.32□□□□□ -0.6
CKAP4-201ENST00000378026 LECT2O14960 151 aa11.32□□□□□ -0.6
CKAP4-201ENST00000378026 IGKV2D-28P01615 120 aa11.32□□□□□ -0.6
CKAP4-201ENST00000378026 RPL18AQ02543 176 aaKnown RBP11.32□□□□□ -0.6
CKAP4-201ENST00000378026 LRRC75A-AS1Q8N1F1 130 aa11.32□□□□□ -0.6
CKAP4-201ENST00000378026 OR13C6PQ8NH95 151 aa11.32□□□□□ -0.6
CKAP4-201ENST00000378026 RPL28P46779 137 aaKnown RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 154.1 ms