RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 VSIG2Q96IQ7 327 aa10.28□□□□□ -0.76
CLCNKA-202ENST00000375692 TRAV8-4A0A0B4J246 113 aa10.27□□□□□ -0.76
CLCNKA-202ENST00000375692 SS18L2Q9UHA2 77 aa10.27□□□□□ -0.76
CLCNKA-202ENST00000375692 SMR3AQ99954 134 aa10.27□□□□□ -0.77
CLCNKA-202ENST00000375692 NACAE9PAV3 2078 aa10.27□□□□□ -0.77
CLCNKA-202ENST00000375692 H3BMM0 161 aa10.26□□□□□ -0.77
CLCNKA-202ENST00000375692 FSHBP01225 129 aa10.26□□□□□ -0.77
CLCNKA-202ENST00000375692 MIAQ16674 131 aa10.26□□□□□ -0.77
CLCNKA-202ENST00000375692 UBE2WQ96B02 151 aa10.26□□□□□ -0.77
CLCNKA-202ENST00000375692 CHCHD7Q9BUK0 85 aa10.26□□□□□ -0.77
CLCNKA-202ENST00000375692 B5MCH6 92 aa10.26□□□□□ -0.77
CLCNKA-202ENST00000375692 RPL13AP40429 203 aaKnown RBP10.26□□□□□ -0.77
CLCNKA-202ENST00000375692 KRTAP1-1Q07627 177 aa10.26□□□□□ -0.77
CLCNKA-202ENST00000375692 C15orf53Q8NAA6 179 aa10.25□□□□□ -0.77
CLCNKA-202ENST00000375692 SPANXDQ9BXN6 97 aa10.25□□□□□ -0.77
CLCNKA-202ENST00000375692 SPANXCQ9NY87 97 aa10.25□□□□□ -0.77
CLCNKA-202ENST00000375692 UBE2D4Q9Y2X8 147 aa10.25□□□□□ -0.77
CLCNKA-202ENST00000375692 HOXD3P31249 432 aaPredicted RBP10.25□□□□□ -0.77
CLCNKA-202ENST00000375692 NDUFV3P56181 108 aaKnown RBP10.25□□□□□ -0.77
CLCNKA-202ENST00000375692 DEFB131AP59861 70 aa10.25□□□□□ -0.77
CLCNKA-202ENST00000375692 DUX3Q96PT4 197 aa10.25□□□□□ -0.77
CLCNKA-202ENST00000375692 LINC00467Q9BRT7 94 aa10.25□□□□□ -0.77
CLCNKA-202ENST00000375692 TINCRA0A1B0GVN0 87 aa10.24□□□□□ -0.77
CLCNKA-202ENST00000375692 GAGE5Q13069 117 aa10.24□□□□□ -0.77
CLCNKA-202ENST00000375692 GAGE6Q13070 117 aa10.24□□□□□ -0.77
CLCNKA-202ENST00000375692 RBMY1BA6NDE4 496 aaKnown RBP10.24□□□□□ -0.77
CLCNKA-202ENST00000375692 RBMY1EA6NEQ0 496 aaKnown RBP10.24□□□□□ -0.77
CLCNKA-202ENST00000375692 RBMY1DP0C7P1 496 aaKnown RBP10.24□□□□□ -0.77
CLCNKA-202ENST00000375692 TMEM61Q8N0U2 210 aa10.23□□□□□ -0.77
CLCNKA-202ENST00000375692 CDKN2A-AS1Q9UH64 79 aa10.23□□□□□ -0.77
CLCNKA-202ENST00000375692 DEFB136Q30KP8 78 aa10.23□□□□□ -0.77
CLCNKA-202ENST00000375692 TTC32Q5I0X7 151 aa10.23□□□□□ -0.77
CLCNKA-202ENST00000375692 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.23□□□□□ -0.77
CLCNKA-202ENST00000375692 LINC01600Q96MT4 127 aa10.23□□□□□ -0.77
CLCNKA-202ENST00000375692 COX6CP09669 75 aa10.22□□□□□ -0.77
CLCNKA-202ENST00000375692 SETD2Q9BYW2 2564 aaPredicted RBP10.22□□□□□ -0.77
CLCNKA-202ENST00000375692 A0A0U1RRA0 63 aa10.22□□□□□ -0.77
CLCNKA-202ENST00000375692 C18orf65Q6ZTR6 163 aa10.22□□□□□ -0.77
CLCNKA-202ENST00000375692 CCDC179H3BU77 68 aa10.21□□□□□ -0.77
CLCNKA-202ENST00000375692 ZNF625Q96I27 306 aaPredicted RBP10.21□□□□□ -0.77
CLCNKA-202ENST00000375692 EDA2RQ9HAV5 297 aa10.21□□□□□ -0.77
CLCNKA-202ENST00000375692 YAE1D1Q9NRH1 226 aa10.21□□□□□ -0.77
CLCNKA-202ENST00000375692 IFITM1P13164 125 aa10.21□□□□□ -0.78
CLCNKA-202ENST00000375692 SLURP1P55000 103 aa10.21□□□□□ -0.78
CLCNKA-202ENST00000375692 COX6A2Q02221 97 aa10.21□□□□□ -0.78
CLCNKA-202ENST00000375692 Q6YL49 198 aa10.21□□□□□ -0.78
CLCNKA-202ENST00000375692 RNF152Q8N8N0 203 aa10.21□□□□□ -0.78
CLCNKA-202ENST00000375692 HIVEP1P15822 2718 aa10.21□□□□□ -0.78
CLCNKA-202ENST00000375692 LST1O00453 97 aa10.21□□□□□ -0.78
CLCNKA-202ENST00000375692 TMEM101Q96IK0 257 aa10.21□□□□□ -0.78
CLCNKA-202ENST00000375692 SPANXA1Q9NS26 97 aa10.21□□□□□ -0.78
CLCNKA-202ENST00000375692 SETXQ7Z333 2677 aaKnown RBP10.2□□□□□ -0.78
CLCNKA-202ENST00000375692 HIST2H2BDQ6DRA6 164 aa10.2□□□□□ -0.78
CLCNKA-202ENST00000375692 HIVEP2P31629 2446 aa10.2□□□□□ -0.78
CLCNKA-202ENST00000375692 C2CD3Q4AC94 2353 aa10.2□□□□□ -0.78
CLCNKA-202ENST00000375692 CITED2Q99967 270 aaPredicted RBP10.2□□□□□ -0.78
CLCNKA-202ENST00000375692 NOTCH3Q9UM47 2321 aa10.19□□□□□ -0.78
CLCNKA-202ENST00000375692 H3BT86 120 aa10.19□□□□□ -0.78
CLCNKA-202ENST00000375692 ANK3Q12955 4377 aaKnown RBP10.18□□□□□ -0.78
CLCNKA-202ENST00000375692 NDUFA7O95182 113 aa10.18□□□□□ -0.78
CLCNKA-202ENST00000375692 LINC01587Q99440 93 aa10.18□□□□□ -0.78
CLCNKA-202ENST00000375692 TMEM89A2RUT3 159 aa10.18□□□□□ -0.78
CLCNKA-202ENST00000375692 VPREB3Q9UKI3 123 aa10.18□□□□□ -0.78
CLCNKA-202ENST00000375692 GAGE12JA6NER3 117 aa10.17□□□□□ -0.78
CLCNKA-202ENST00000375692 GAGE7O76087 117 aa10.17□□□□□ -0.78
CLCNKA-202ENST00000375692 GAGE12FP0CL80 117 aa10.17□□□□□ -0.78
CLCNKA-202ENST00000375692 GAGE12GP0CL81 117 aa10.17□□□□□ -0.78
CLCNKA-202ENST00000375692 GAGE12IP0CL82 117 aa10.17□□□□□ -0.78
CLCNKA-202ENST00000375692 ZNF415Q09FC8 603 aa10.17□□□□□ -0.78
CLCNKA-202ENST00000375692 GAGE4Q13068 117 aa10.17□□□□□ -0.78
CLCNKA-202ENST00000375692 DGAT2L7PQ6IED9 249 aa10.17□□□□□ -0.78
CLCNKA-202ENST00000375692 Q9H8V8 135 aa10.17□□□□□ -0.78
CLCNKA-202ENST00000375692 BAHCC1Q9P281 2608 aa10.16□□□□□ -0.78
CLCNKA-202ENST00000375692 IGHV3OR16-12A0A075B7B8 117 aa10.16□□□□□ -0.78
CLCNKA-202ENST00000375692 NDUFA1O15239 70 aa10.16□□□□□ -0.78
CLCNKA-202ENST00000375692 IGHV3-53P01767 116 aa10.16□□□□□ -0.78
CLCNKA-202ENST00000375692 Q6Q795 121 aa10.16□□□□□ -0.78
CLCNKA-202ENST00000375692 SVIPQ8NHG7 77 aa10.16□□□□□ -0.78
CLCNKA-202ENST00000375692 UBE2E2Q96LR5 201 aa10.16□□□□□ -0.78
CLCNKA-202ENST00000375692 C11orf72Q8NBR9 251 aa10.16□□□□□ -0.78
CLCNKA-202ENST00000375692 LINC00308Q8TCZ7 52 aa10.16□□□□□ -0.78
CLCNKA-202ENST00000375692 TIMM17BO60830 172 aa10.15□□□□□ -0.78
CLCNKA-202ENST00000375692 ZNF702PQ9H963 129 aa10.15□□□□□ -0.78
CLCNKA-202ENST00000375692 LINC00694P0DN24 101 aa10.15□□□□□ -0.79
CLCNKA-202ENST00000375692 Q8N2B8 174 aa10.15□□□□□ -0.79
CLCNKA-202ENST00000375692 LY6G6DO95868 133 aa10.14□□□□□ -0.79
CLCNKA-202ENST00000375692 TIRAPP58753 221 aa10.14□□□□□ -0.79
CLCNKA-202ENST00000375692 ESM1Q9NQ30 184 aa10.14□□□□□ -0.79
CLCNKA-202ENST00000375692 LINC00242Q5T6M2 205 aa10.14□□□□□ -0.79
CLCNKA-202ENST00000375692 SOSTDC1Q6X4U4 206 aa10.14□□□□□ -0.79
CLCNKA-202ENST00000375692 IGLV5-45A0A087WSX0 123 aa10.13□□□□□ -0.79
CLCNKA-202ENST00000375692 A8MTW9 85 aa10.13□□□□□ -0.79
CLCNKA-202ENST00000375692 CIRBPQ14011 172 aaKnown RBP10.13□□□□□ -0.79
CLCNKA-202ENST00000375692 DEFB121Q5J5C9 76 aa10.13□□□□□ -0.79
CLCNKA-202ENST00000375692 TRAV13-1A0A0B4J241 112 aa10.13□□□□□ -0.79
CLCNKA-202ENST00000375692 MAP6D1Q9H9H5 199 aa10.13□□□□□ -0.79
CLCNKA-202ENST00000375692 FN1P02751 2386 aaKnown RBP10.12□□□□□ -0.79
CLCNKA-202ENST00000375692 DNAJC30Q96LL9 226 aa10.12□□□□□ -0.79
CLCNKA-202ENST00000375692 XCL2Q9UBD3 114 aa10.12□□□□□ -0.79
CLCNKA-202ENST00000375692 WNK1Q9H4A3 2382 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 204 ms