RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 SCGB1C2P0DMR2 95 aa10.37□□□□□ -0.75
HMGA1-203ENST00000374116 DEFB121Q5J5C9 76 aa10.37□□□□□ -0.75
HMGA1-203ENST00000374116 C2orf66Q6UXQ4 117 aa10.37□□□□□ -0.75
HMGA1-203ENST00000374116 JPT2Q9H910 190 aa10.37□□□□□ -0.75
HMGA1-203ENST00000374116 A0A087WWL8 130 aa10.36□□□□□ -0.75
HMGA1-203ENST00000374116 TRAV25A0A0B4J276 109 aa10.36□□□□□ -0.75
HMGA1-203ENST00000374116 F5H697 171 aa10.36□□□□□ -0.75
HMGA1-203ENST00000374116 VCYO14598 125 aa10.36□□□□□ -0.75
HMGA1-203ENST00000374116 RPL13AP40429 203 aaKnown RBP10.36□□□□□ -0.75
HMGA1-203ENST00000374116 POLR2KP53803 58 aaKnown RBP10.36□□□□□ -0.75
HMGA1-203ENST00000374116 KIR2DL4Q99706 377 aa10.36□□□□□ -0.75
HMGA1-203ENST00000374116 A0A0J9YY99 117 aa10.35□□□□□ -0.75
HMGA1-203ENST00000374116 TRBV6-5A0A0K0K1A5 114 aa10.35□□□□□ -0.75
HMGA1-203ENST00000374116 CCDC179H3BU77 68 aa10.35□□□□□ -0.75
HMGA1-203ENST00000374116 SLC25A20O43772 301 aa10.35□□□□□ -0.75
HMGA1-203ENST00000374116 P0DMU3 169 aa10.35□□□□□ -0.75
HMGA1-203ENST00000374116 FAM231AP0DMU4 169 aa10.35□□□□□ -0.75
HMGA1-203ENST00000374116 FAM231CP0DMU5 169 aa10.35□□□□□ -0.75
HMGA1-203ENST00000374116 DEFB131AP59861 70 aa10.35□□□□□ -0.75
HMGA1-203ENST00000374116 SRSF9Q13242 221 aaKnown RBP eCLIP10.35□□□□□ -0.75
HMGA1-203ENST00000374116 ODF3L2Q3SX64 289 aa10.35□□□□□ -0.75
HMGA1-203ENST00000374116 PAPPA-AS1Q5QFB9 102 aa10.35□□□□□ -0.75
HMGA1-203ENST00000374116 TTC32Q5I0X7 151 aa10.35□□□□□ -0.75
HMGA1-203ENST00000374116 SCGB1D4Q6XE38 83 aa10.35□□□□□ -0.75
HMGA1-203ENST00000374116 PLEKHB2Q96CS7 222 aa10.35□□□□□ -0.75
HMGA1-203ENST00000374116 C19orf73Q9NVV2 129 aa10.35□□□□□ -0.75
HMGA1-203ENST00000374116 KNCNA6PVL3 124 aa10.34□□□□□ -0.75
HMGA1-203ENST00000374116 H3BMM0 161 aa10.34□□□□□ -0.75
HMGA1-203ENST00000374116 SMIM20Q8N5G0 67 aa10.34□□□□□ -0.75
HMGA1-203ENST00000374116 MRAPQ8TCY5 172 aa10.34□□□□□ -0.75
HMGA1-203ENST00000374116 IGHV3-30P01768 117 aa10.33□□□□□ -0.76
HMGA1-203ENST00000374116 CRYGDP07320 174 aa10.33□□□□□ -0.76
HMGA1-203ENST00000374116 CFC1BP0CG36 223 aa10.33□□□□□ -0.76
HMGA1-203ENST00000374116 CFC1P0CG37 223 aa10.33□□□□□ -0.76
HMGA1-203ENST00000374116 IGHV3-30-5P0DP03 117 aa10.33□□□□□ -0.76
HMGA1-203ENST00000374116 BAALCQ8WXS3 180 aa10.33□□□□□ -0.76
HMGA1-203ENST00000374116 MAP6D1Q9H9H5 199 aa10.33□□□□□ -0.76
HMGA1-203ENST00000374116 TRAV4A0A0B4J268 109 aa10.33□□□□□ -0.76
HMGA1-203ENST00000374116 TRBV27A0A0K0K1C4 114 aa10.33□□□□□ -0.76
HMGA1-203ENST00000374116 IGHV4-30-4P0DP06 118 aa10.33□□□□□ -0.76
HMGA1-203ENST00000374116 HERVK_113P61574 105 aa10.33□□□□□ -0.76
HMGA1-203ENST00000374116 FAM74A4Q5TZK3 123 aa10.33□□□□□ -0.76
HMGA1-203ENST00000374116 TMEM126AQ9H061 195 aa10.33□□□□□ -0.76
HMGA1-203ENST00000374116 PRO1854Q9UHT4 67 aa10.33□□□□□ -0.76
HMGA1-203ENST00000374116 SDHAF1A6NFY7 115 aa10.32□□□□□ -0.76
HMGA1-203ENST00000374116 ZNF56Q15929 161 aa10.32□□□□□ -0.76
HMGA1-203ENST00000374116 ZNF876PQ49A33 203 aa10.32□□□□□ -0.76
HMGA1-203ENST00000374116 SLC25A29Q8N8R3 303 aa10.32□□□□□ -0.76
HMGA1-203ENST00000374116 RBMY1BA6NDE4 496 aaKnown RBP10.31□□□□□ -0.76
HMGA1-203ENST00000374116 RBMY1EA6NEQ0 496 aaKnown RBP10.31□□□□□ -0.76
HMGA1-203ENST00000374116 M0QY20 66 aa10.31□□□□□ -0.76
HMGA1-203ENST00000374116 RBMY1DP0C7P1 496 aaKnown RBP10.31□□□□□ -0.76
HMGA1-203ENST00000374116 TRPT1Q86TN4 253 aaKnown RBP10.31□□□□□ -0.76
HMGA1-203ENST00000374116 A0A0B4J2C4 111 aa10.3□□□□□ -0.76
HMGA1-203ENST00000374116 RBMY1A1P0DJD3 496 aaKnown RBP10.3□□□□□ -0.76
HMGA1-203ENST00000374116 RBMY1CP0DJD4 496 aa10.3□□□□□ -0.76
HMGA1-203ENST00000374116 RBMY1FQ15415 496 aaKnown RBP10.3□□□□□ -0.76
HMGA1-203ENST00000374116 TMEM141Q96I45 108 aa10.3□□□□□ -0.76
HMGA1-203ENST00000374116 PRKDCP78527 4128 aaKnown RBP10.3□□□□□ -0.76
HMGA1-203ENST00000374116 TP53TG1Q9Y2A0 90 aa10.3□□□□□ -0.76
HMGA1-203ENST00000374116 FAM240AA0A1B0GVK7 77 aa10.29□□□□□ -0.76
HMGA1-203ENST00000374116 IGIPA6NJ69 53 aa10.29□□□□□ -0.76
HMGA1-203ENST00000374116 TIMM17AQ99595 171 aa10.29□□□□□ -0.76
HMGA1-203ENST00000374116 C9JAW5 83 aa10.28□□□□□ -0.76
HMGA1-203ENST00000374116 RPL35AP18077 110 aaKnown RBP10.28□□□□□ -0.76
HMGA1-203ENST00000374116 RHOHQ15669 191 aa10.28□□□□□ -0.76
HMGA1-203ENST00000374116 PIK3CD-AS1Q5SR53 167 aa10.28□□□□□ -0.76
HMGA1-203ENST00000374116 LINC00467Q9BRT7 94 aa10.28□□□□□ -0.76
HMGA1-203ENST00000374116 SPANXDQ9BXN6 97 aa10.28□□□□□ -0.76
HMGA1-203ENST00000374116 EDA2RQ9HAV5 297 aa10.28□□□□□ -0.76
HMGA1-203ENST00000374116 IGLV4-69A0A075B6H9 119 aa10.28□□□□□ -0.76
HMGA1-203ENST00000374116 TRAV8-4A0A0B4J246 113 aa10.28□□□□□ -0.76
HMGA1-203ENST00000374116 IGHV3-33P01772 117 aa10.28□□□□□ -0.76
HMGA1-203ENST00000374116 C11orf86A6NJI1 115 aa10.27□□□□□ -0.77
HMGA1-203ENST00000374116 PMVKQ15126 192 aa10.27□□□□□ -0.77
HMGA1-203ENST00000374116 ATXN8Q156A1 80 aa10.27□□□□□ -0.77
HMGA1-203ENST00000374116 SFTA2Q6UW10 78 aa10.27□□□□□ -0.77
HMGA1-203ENST00000374116 TMEM263Q8WUH6 116 aaKnown RBP10.27□□□□□ -0.77
HMGA1-203ENST00000374116 AMELXQ99217 191 aa10.27□□□□□ -0.77
HMGA1-203ENST00000374116 TRBV10-2A0A0K0K1G8 114 aa10.26□□□□□ -0.77
HMGA1-203ENST00000374116 M0R2P5 195 aa10.26□□□□□ -0.77
HMGA1-203ENST00000374116 TSHBP01222 138 aa10.26□□□□□ -0.77
HMGA1-203ENST00000374116 HTN1P15515 57 aa10.26□□□□□ -0.77
HMGA1-203ENST00000374116 ZNF415Q09FC8 603 aa10.26□□□□□ -0.77
HMGA1-203ENST00000374116 C15orf53Q8NAA6 179 aa10.26□□□□□ -0.77
HMGA1-203ENST00000374116 TRBV7-7A0A0K0K1E9 115 aa10.26□□□□□ -0.77
HMGA1-203ENST00000374116 I3L3M4 83 aa10.26□□□□□ -0.77
HMGA1-203ENST00000374116 RPL39P62891 51 aaKnown RBP10.26□□□□□ -0.77
HMGA1-203ENST00000374116 LINC01620Q4KN68 170 aa10.26□□□□□ -0.77
HMGA1-203ENST00000374116 NTN5Q8WTR8 489 aaPredicted RBP10.26□□□□□ -0.77
HMGA1-203ENST00000374116 NBEAL2Q6ZNJ1 2754 aa10.26□□□□□ -0.77
HMGA1-203ENST00000374116 INSP01308 110 aa10.25□□□□□ -0.77
HMGA1-203ENST00000374116 LINC01587Q99440 93 aa10.24□□□□□ -0.77
HMGA1-203ENST00000374116 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.23□□□□□ -0.77
HMGA1-203ENST00000374116 STHQ8IWL8 128 aa10.23□□□□□ -0.77
HMGA1-203ENST00000374116 SPXQ9BT56 116 aa10.23□□□□□ -0.77
HMGA1-203ENST00000374116 TRBV30A0A0K0K1B3 111 aa10.23□□□□□ -0.77
HMGA1-203ENST00000374116 H3BT86 120 aa10.23□□□□□ -0.77
HMGA1-203ENST00000374116 MEIG1Q5JSS6 88 aa10.23□□□□□ -0.77
HMGA1-203ENST00000374116 DEFB104AQ8WTQ1 72 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms