RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 UBE2L6O14933 153 aa6.24□□□□□ -1.41
SNRNP40-202ENST00000373720 UBE2D1P51668 147 aa6.24□□□□□ -1.41
SNRNP40-202ENST00000373720 HERV-K104P63124 156 aa6.24□□□□□ -1.41
SNRNP40-202ENST00000373720 C12orf74Q32Q52 190 aa6.24□□□□□ -1.41
SNRNP40-202ENST00000373720 HIST2H2BCQ6DN03 193 aa6.24□□□□□ -1.41
SNRNP40-202ENST00000373720 TMEM243Q9BU79 118 aa6.24□□□□□ -1.41
SNRNP40-202ENST00000373720 NOP10Q9NPE3 64 aaKnown RBP6.24□□□□□ -1.41
SNRNP40-202ENST00000373720 SETXQ7Z333 2677 aaKnown RBP6.24□□□□□ -1.41
SNRNP40-202ENST00000373720 CSMD1Q96PZ7 3565 aa6.24□□□□□ -1.41
SNRNP40-202ENST00000373720 GCN1Q92616 2671 aaKnown RBP6.23□□□□□ -1.41
SNRNP40-202ENST00000373720 CCDC168Q8NDH2 2452 aa6.23□□□□□ -1.41
SNRNP40-202ENST00000373720 IGHV3OR16-12A0A075B7B8 117 aa6.23□□□□□ -1.41
SNRNP40-202ENST00000373720 TRAV26-1A0A087WT03 109 aa6.23□□□□□ -1.41
SNRNP40-202ENST00000373720 GAGE12BA1L429 117 aa6.23□□□□□ -1.41
SNRNP40-202ENST00000373720 MIFP14174 115 aa6.23□□□□□ -1.41
SNRNP40-202ENST00000373720 FXYD2P54710 66 aa6.23□□□□□ -1.41
SNRNP40-202ENST00000373720 Q6ZTI0 123 aa6.23□□□□□ -1.41
SNRNP40-202ENST00000373720 LINC01561Q8N1V8 128 aa6.23□□□□□ -1.41
SNRNP40-202ENST00000373720 PHLDA1Q8WV24 401 aaPredicted RBP6.23□□□□□ -1.41
SNRNP40-202ENST00000373720 VSIG2Q96IQ7 327 aa6.23□□□□□ -1.41
SNRNP40-202ENST00000373720 NHP2Q9NX24 153 aaKnown RBP6.23□□□□□ -1.41
SNRNP40-202ENST00000373720 FLNBO75369 2602 aaKnown RBP6.23□□□□□ -1.41
SNRNP40-202ENST00000373720 IGHV3-73A0A0B4J1V6 119 aa6.22□□□□□ -1.41
SNRNP40-202ENST00000373720 A0A0B4J2C4 111 aa6.22□□□□□ -1.41
SNRNP40-202ENST00000373720 PLAC8L1A1L4L8 177 aa6.22□□□□□ -1.41
SNRNP40-202ENST00000373720 H3BUT2 72 aa6.22□□□□□ -1.41
SNRNP40-202ENST00000373720 J3QR89 54 aa6.22□□□□□ -1.41
SNRNP40-202ENST00000373720 IGHV3-30-3P0DP02 117 aa6.22□□□□□ -1.41
SNRNP40-202ENST00000373720 ZFAND6Q6FIF0 208 aa6.22□□□□□ -1.41
SNRNP40-202ENST00000373720 Q6ZSN1 163 aa6.22□□□□□ -1.41
SNRNP40-202ENST00000373720 SBSPONQ8IVN8 264 aa6.22□□□□□ -1.41
SNRNP40-202ENST00000373720 ZNF479Q96JC4 524 aa6.22□□□□□ -1.41
SNRNP40-202ENST00000373720 SPANXDQ9BXN6 97 aa6.22□□□□□ -1.41
SNRNP40-202ENST00000373720 CDC42SE2Q9NRR3 84 aa6.22□□□□□ -1.41
SNRNP40-202ENST00000373720 SPANXCQ9NY87 97 aa6.22□□□□□ -1.41
SNRNP40-202ENST00000373720 PRO0255Q9UI72 69 aa6.22□□□□□ -1.41
SNRNP40-202ENST00000373720 SPCS1Q9Y6A9 102 aa6.22□□□□□ -1.41
SNRNP40-202ENST00000373720 CSMD2Q7Z408 3487 aa6.22□□□□□ -1.41
SNRNP40-202ENST00000373720 A0A0J9YXV3 536 aa6.21□□□□□ -1.42
SNRNP40-202ENST00000373720 A0A1B0GUV1 79 aa6.21□□□□□ -1.42
SNRNP40-202ENST00000373720 A8MZ25 164 aa6.21□□□□□ -1.42
SNRNP40-202ENST00000373720 IGLL5B9A064 214 aa6.21□□□□□ -1.42
SNRNP40-202ENST00000373720 INAFM1C9JVW0 142 aa6.21□□□□□ -1.42
SNRNP40-202ENST00000373720 IGHV3-30P01768 117 aa6.21□□□□□ -1.42
SNRNP40-202ENST00000373720 IGHV3-30-5P0DP03 117 aa6.21□□□□□ -1.42
SNRNP40-202ENST00000373720 CBY1Q9Y3M2 126 aa6.21□□□□□ -1.42
SNRNP40-202ENST00000373720 TLN2Q9Y4G6 2542 aa6.2□□□□□ -1.42
SNRNP40-202ENST00000373720 TRBV6-8A0A0A6YYG3 113 aa6.2□□□□□ -1.42
SNRNP40-202ENST00000373720 IGLV5-39A0A0G2JS06 123 aa6.2□□□□□ -1.42
SNRNP40-202ENST00000373720 M0QXV9 152 aa6.2□□□□□ -1.42
SNRNP40-202ENST00000373720 NDUFA1O15239 70 aa6.2□□□□□ -1.42
SNRNP40-202ENST00000373720 LINC00694P0DN24 101 aa6.2□□□□□ -1.42
SNRNP40-202ENST00000373720 RPL35AP18077 110 aaKnown RBP6.2□□□□□ -1.42
SNRNP40-202ENST00000373720 FHL2Q14192 279 aa6.2□□□□□ -1.42
SNRNP40-202ENST00000373720 PRO1854Q9UHT4 67 aa6.2□□□□□ -1.42
SNRNP40-202ENST00000373720 GAGE7O76087 117 aa6.19□□□□□ -1.42
SNRNP40-202ENST00000373720 GAGE12FP0CL80 117 aa6.19□□□□□ -1.42
SNRNP40-202ENST00000373720 GAGE12GP0CL81 117 aa6.19□□□□□ -1.42
SNRNP40-202ENST00000373720 GAGE12IP0CL82 117 aa6.19□□□□□ -1.42
SNRNP40-202ENST00000373720 C10orf126Q8N4M7 172 aa6.19□□□□□ -1.42
SNRNP40-202ENST00000373720 FAM104AQ969W3 186 aa6.19□□□□□ -1.42
SNRNP40-202ENST00000373720 NDUFA12Q9UI09 145 aa6.19□□□□□ -1.42
SNRNP40-202ENST00000373720 ITPR2Q14571 2701 aa6.19□□□□□ -1.42
SNRNP40-202ENST00000373720 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.18□□□□□ -1.42
SNRNP40-202ENST00000373720 IGKV2-29A2NJV5 120 aaPredicted RBP6.18□□□□□ -1.42
SNRNP40-202ENST00000373720 COX6CP09669 75 aa6.18□□□□□ -1.42
SNRNP40-202ENST00000373720 KRTAP10-3P60369 221 aa6.18□□□□□ -1.42
SNRNP40-202ENST00000373720 MUC7Q8TAX7 377 aa6.18□□□□□ -1.42
SNRNP40-202ENST00000373720 RAB37Q96AX2 223 aa6.18□□□□□ -1.42
SNRNP40-202ENST00000373720 SMR3AQ99954 134 aa6.18□□□□□ -1.42
SNRNP40-202ENST00000373720 TTTY13Q9BZ97 58 aa6.18□□□□□ -1.42
SNRNP40-202ENST00000373720 SORL1Q92673 2214 aa6.18□□□□□ -1.42
SNRNP40-202ENST00000373720 ZFHX3Q15911 3703 aa6.17□□□□□ -1.42
SNRNP40-202ENST00000373720 GAGE12JA6NER3 117 aa6.17□□□□□ -1.42
SNRNP40-202ENST00000373720 H3BNG1 76 aa6.17□□□□□ -1.42
SNRNP40-202ENST00000373720 SPART-AS1P0CW21 52 aa6.17□□□□□ -1.42
SNRNP40-202ENST00000373720 GAGE4Q13068 117 aa6.17□□□□□ -1.42
SNRNP40-202ENST00000373720 GAGE5Q13069 117 aa6.17□□□□□ -1.42
SNRNP40-202ENST00000373720 MIAQ16674 131 aa6.17□□□□□ -1.42
SNRNP40-202ENST00000373720 GAGE13Q4V321 117 aa6.17□□□□□ -1.42
SNRNP40-202ENST00000373720 LINC00242Q5T6M2 205 aa6.17□□□□□ -1.42
SNRNP40-202ENST00000373720 Q6ZUT4 128 aa6.17□□□□□ -1.42
SNRNP40-202ENST00000373720 ATP6V0E2Q8NHE4 81 aa6.17□□□□□ -1.42
SNRNP40-202ENST00000373720 X6R8D5 127 aa6.17□□□□□ -1.42
SNRNP40-202ENST00000373720 SONP18583 2426 aaKnown RBP6.17□□□□□ -1.42
SNRNP40-202ENST00000373720 GHRHP01286 108 aa6.16□□□□□ -1.42
SNRNP40-202ENST00000373720 ATP5G1P05496 136 aa6.16□□□□□ -1.42
SNRNP40-202ENST00000373720 EMP1P54849 157 aa6.16□□□□□ -1.42
SNRNP40-202ENST00000373720 TCTAP57738 103 aa6.16□□□□□ -1.42
SNRNP40-202ENST00000373720 NTM-AS1Q6ZSK4 140 aa6.16□□□□□ -1.42
SNRNP40-202ENST00000373720 OPRPNQ99935 248 aaPredicted RBP6.16□□□□□ -1.42
SNRNP40-202ENST00000373720 ERG28Q9UKR5 140 aa6.16□□□□□ -1.42
SNRNP40-202ENST00000373720 NACAE9PAV3 2078 aa6.15□□□□□ -1.42
SNRNP40-202ENST00000373720 TRBV30A0A0K0K1B3 111 aa6.15□□□□□ -1.42
SNRNP40-202ENST00000373720 CFC1BP0CG36 223 aa6.15□□□□□ -1.42
SNRNP40-202ENST00000373720 CFC1P0CG37 223 aa6.15□□□□□ -1.42
SNRNP40-202ENST00000373720 OCIAD2Q56VL3 154 aa6.15□□□□□ -1.42
SNRNP40-202ENST00000373720 LINC01600Q96MT4 127 aa6.15□□□□□ -1.42
SNRNP40-202ENST00000373720 CDKN2A-AS1Q9UH64 79 aa6.15□□□□□ -1.42
SNRNP40-202ENST00000373720 IGHV3-38A0A0C4DH36 116 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 164.5 ms